data_7JV1
#
_model_server_result.job_id            0GSomZzbcF7pCZfBgCPmfA 
_model_server_result.datetime_utc      '2024-11-07 19:06:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7jv1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":402}' 
#
_entry.id    7JV1 
#
_exptl.entry_id    7JV1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              666.463 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "N-(3-{3-cyclopropyl-5-[(2-fluoro-4-iodophenyl)amino]-6,8-dimethyl-2,4,7-trioxo-3,4,6,7-tetrahydropyrido[4,3-d]pyrimidin-1(2H)-yl}phenyl)-N'-methylsulfuric diamide" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7JV1 
_cell.length_a            137 
_cell.length_b            137 
_cell.length_c            221 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7JV1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    'P 61 2 (x,y,z+5/12)' 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B NZ LYS 88 C LYS 97 1_555 E O1A ANP . C ANP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
metalc ? metalc1 A OD1 ASN 173 D ASN 738 1_555 D MG MG . D MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc2 A OD2 ASP 185 D ASP 750 1_555 D MG MG . D MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc3 C O2A ANP . D ANP 901 1_555 D MG MG . D MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
#
_chem_comp.formula           'C25 H24 F I N6 O5 S' 
_chem_comp.formula_weight    666.463 
_chem_comp.id                VKG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "N-(3-{3-cyclopropyl-5-[(2-fluoro-4-iodophenyl)amino]-6,8-dimethyl-2,4,7-trioxo-3,4,6,7-tetrahydropyrido[4,3-d]pyrimidin-1(2H)-yl}phenyl)-N'-methylsulfuric diamide" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 VKG sing 424 n n 
C18 C16 VKG sing 425 n n 
C17 C16 VKG sing 426 n n 
C16 N15 VKG sing 427 n n 
C01 N02 VKG sing 428 n n 
O14 C13 VKG doub 429 n n 
N15 C13 VKG sing 430 n n 
N15 C19 VKG sing 431 n n 
O20 C19 VKG doub 432 n n 
F31 C30 VKG sing 433 n n 
C13 N12 VKG sing 434 n n 
N02 S03 VKG sing 435 n n 
C19 C21 VKG sing 436 n n 
O05 S03 VKG doub 437 n n 
N12 C11 VKG sing 438 n n 
N12 C38 VKG sing 439 n n 
C39 C11 VKG doub 440 n y 
C39 C07 VKG sing 441 n y 
S03 N06 VKG sing 442 n n 
S03 O04 VKG doub 443 n n 
C30 C29 VKG doub 444 n y 
C30 C24 VKG sing 445 n y 
N06 C07 VKG sing 446 n n 
C11 C10 VKG sing 447 n y 
C21 C38 VKG sing 448 n n 
C21 C22 VKG doub 449 n n 
C07 C08 VKG doub 450 n y 
C29 C27 VKG sing 451 n y 
N23 C24 VKG sing 452 n n 
N23 C22 VKG sing 453 n n 
C38 C36 VKG doub 454 n n 
C10 C09 VKG doub 455 n y 
C24 C25 VKG doub 456 n y 
C08 C09 VKG sing 457 n y 
C22 N32 VKG sing 458 n n 
C27 I28 VKG sing 459 n n 
C27 C26 VKG doub 460 n y 
C36 C34 VKG sing 461 n n 
C36 C37 VKG sing 462 n n 
C25 C26 VKG sing 463 n y 
N32 C34 VKG sing 464 n n 
N32 C33 VKG sing 465 n n 
C34 O35 VKG doub 466 n n 
C01 H1 VKG sing 467 n n 
C01 H2 VKG sing 468 n n 
C01 H3 VKG sing 469 n n 
C08 H4 VKG sing 470 n n 
C09 H5 VKG sing 471 n n 
C10 H6 VKG sing 472 n n 
C16 H7 VKG sing 473 n n 
C17 H8 VKG sing 474 n n 
C17 H9 VKG sing 475 n n 
C18 H10 VKG sing 476 n n 
C18 H11 VKG sing 477 n n 
C25 H12 VKG sing 478 n n 
C26 H13 VKG sing 479 n n 
C29 H14 VKG sing 480 n n 
C33 H15 VKG sing 481 n n 
C33 H16 VKG sing 482 n n 
C33 H17 VKG sing 483 n n 
C37 H18 VKG sing 484 n n 
C37 H19 VKG sing 485 n n 
C37 H20 VKG sing 486 n n 
C39 H21 VKG sing 487 n n 
N02 H22 VKG sing 488 n n 
N06 H23 VKG sing 489 n n 
N23 H24 VKG sing 490 n n 
#
_atom_sites.entry_id                     7JV1 
_atom_sites.fract_transf_matrix[1][1]    0.007299 
_atom_sites.fract_transf_matrix[1][2]    0.004214 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008428 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004525 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ANP D 1 901 901 ANP ANP . 
D 4 MG D 1 902 1001 MG MG . 
E 3 ANP C 1 401 401 ANP ANP . 
F 5 VKG C 1 402 501 VKG 951 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 VKG . . . F 5 -20.641 48.024 6.212 1 184.18 ? C01 VKG 402 C 1 
HETATM 2 C C07 VKG . . . F 5 -18.872 47.009 8.941 1 201.53 ? C07 VKG 402 C 1 
HETATM 3 C C08 VKG . . . F 5 -20.046 46.668 9.619 1 195.85 ? C08 VKG 402 C 1 
HETATM 4 C C09 VKG . . . F 5 -20.34 45.335 9.901 1 195.22 ? C09 VKG 402 C 1 
HETATM 5 C C10 VKG . . . F 5 -19.445 44.347 9.49 1 191.98 ? C10 VKG 402 C 1 
HETATM 6 C C11 VKG . . . F 5 -18.267 44.68 8.804 1 194.45 ? C11 VKG 402 C 1 
HETATM 7 C C13 VKG . . . F 5 -17.783 43.034 7.3 1 193.47 ? C13 VKG 402 C 1 
HETATM 8 C C16 VKG . . . F 5 -17.45 41.355 5.569 1 195.3 ? C16 VKG 402 C 1 
HETATM 9 C C17 VKG . . . F 5 -16.292 41.72 4.626 1 187.37 ? C17 VKG 402 C 1 
HETATM 10 C C18 VKG . . . F 5 -17.726 41.775 4.12 1 191.59 ? C18 VKG 402 C 1 
HETATM 11 C C19 VKG . . . F 5 -16.132 41.412 7.624 1 191.4 ? C19 VKG 402 C 1 
HETATM 12 C C21 VKG . . . F 5 -15.786 41.984 8.891 1 195.44 ? C21 VKG 402 C 1 
HETATM 13 C C22 VKG . . . F 5 -14.734 41.366 9.654 1 195.64 ? C22 VKG 402 C 1 
HETATM 14 C C24 VKG . . . F 5 -14.4 38.776 9.502 1 198.01 ? C24 VKG 402 C 1 
HETATM 15 C C25 VKG . . . F 5 -14.238 38.377 10.829 1 201.09 ? C25 VKG 402 C 1 
HETATM 16 C C26 VKG . . . F 5 -14.553 37.091 11.236 1 213.45 ? C26 VKG 402 C 1 
HETATM 17 C C27 VKG . . . F 5 -15.028 36.171 10.317 1 226.55 ? C27 VKG 402 C 1 
HETATM 18 C C29 VKG . . . F 5 -15.193 36.544 8.984 1 217.43 ? C29 VKG 402 C 1 
HETATM 19 C C30 VKG . . . F 5 -14.878 37.845 8.574 1 205.12 ? C30 VKG 402 C 1 
HETATM 20 C C33 VKG . . . F 5 -13.319 41.325 11.67 1 189.2 ? C33 VKG 402 C 1 
HETATM 21 C C34 VKG . . . F 5 -15.024 42.987 11.338 1 199.05 ? C34 VKG 402 C 1 
HETATM 22 C C36 VKG . . . F 5 -16.063 43.628 10.636 1 201.52 ? C36 VKG 402 C 1 
HETATM 23 C C37 VKG . . . F 5 -16.644 44.857 11.37 1 196.65 ? C37 VKG 402 C 1 
HETATM 24 C C38 VKG . . . F 5 -16.476 43.097 9.326 1 197.12 ? C38 VKG 402 C 1 
HETATM 25 C C39 VKG . . . F 5 -17.964 46.022 8.517 1 201.33 ? C39 VKG 402 C 1 
HETATM 26 F F31 VKG . . . F 5 -15.049 38.192 7.263 1 199.42 ? F31 VKG 402 C 1 
HETATM 27 I I28 VKG . . . F 5 -15.484 34.225 10.992 1 451.64 ? I28 VKG 402 C 1 
HETATM 28 N N02 VKG . . . F 5 -21.137 48.73 7.4 1 190.33 ? N02 VKG 402 C 1 
HETATM 29 N N06 VKG . . . F 5 -18.641 48.434 8.683 1 209.52 ? N06 VKG 402 C 1 
HETATM 30 N N12 VKG . . . F 5 -17.484 43.622 8.476 1 192.09 ? N12 VKG 402 C 1 
HETATM 31 N N15 VKG . . . F 5 -17.11 41.945 6.881 1 195.23 ? N15 VKG 402 C 1 
HETATM 32 N N23 VKG . . . F 5 -14.042 40.168 9.106 1 194.56 ? N23 VKG 402 C 1 
HETATM 33 N N32 VKG . . . F 5 -14.396 41.9 10.846 1 194.74 ? N32 VKG 402 C 1 
HETATM 34 O O04 VKG . . . F 5 -20.69 49.674 9.814 1 195.48 ? O04 VKG 402 C 1 
HETATM 35 O O05 VKG . . . F 5 -19.654 50.798 8.144 1 207.67 ? O05 VKG 402 C 1 
HETATM 36 O O14 VKG . . . F 5 -18.646 43.492 6.621 1 193.25 ? O14 VKG 402 C 1 
HETATM 37 O O20 VKG . . . F 5 -15.539 40.453 7.252 1 186.69 ? O20 VKG 402 C 1 
HETATM 38 O O35 VKG . . . F 5 -14.691 43.421 12.399 1 195.81 ? O35 VKG 402 C 1 
HETATM 39 S S03 VKG . . . F 5 -20.035 49.436 8.522 1 274.54 ? S03 VKG 402 C 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           39 
#