data_7JV1 # _model_server_result.job_id K1QgoiPE2g3asgTgH5R7Mw _model_server_result.datetime_utc '2024-11-29 04:17:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jv1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 7JV1 # _exptl.entry_id 7JV1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 666.463 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-(3-{3-cyclopropyl-5-[(2-fluoro-4-iodophenyl)amino]-6,8-dimethyl-2,4,7-trioxo-3,4,6,7-tetrahydropyrido[4,3-d]pyrimidin-1(2H)-yl}phenyl)-N'-methylsulfuric diamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JV1 _cell.length_a 137 _cell.length_b 137 _cell.length_c 221 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JV1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B NZ LYS 88 C LYS 97 1_555 E O1A ANP . C ANP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? metalc ? metalc1 A OD1 ASN 173 D ASN 738 1_555 D MG MG . D MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc2 A OD2 ASP 185 D ASP 750 1_555 D MG MG . D MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc3 C O2A ANP . D ANP 901 1_555 D MG MG . D MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? # _chem_comp.formula 'C25 H24 F I N6 O5 S' _chem_comp.formula_weight 666.463 _chem_comp.id VKG _chem_comp.mon_nstd_flag . _chem_comp.name "N-(3-{3-cyclopropyl-5-[(2-fluoro-4-iodophenyl)amino]-6,8-dimethyl-2,4,7-trioxo-3,4,6,7-tetrahydropyrido[4,3-d]pyrimidin-1(2H)-yl}phenyl)-N'-methylsulfuric diamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 VKG sing 424 n n C18 C16 VKG sing 425 n n C17 C16 VKG sing 426 n n C16 N15 VKG sing 427 n n C01 N02 VKG sing 428 n n O14 C13 VKG doub 429 n n N15 C13 VKG sing 430 n n N15 C19 VKG sing 431 n n O20 C19 VKG doub 432 n n F31 C30 VKG sing 433 n n C13 N12 VKG sing 434 n n N02 S03 VKG sing 435 n n C19 C21 VKG sing 436 n n O05 S03 VKG doub 437 n n N12 C11 VKG sing 438 n n N12 C38 VKG sing 439 n n C39 C11 VKG doub 440 n y C39 C07 VKG sing 441 n y S03 N06 VKG sing 442 n n S03 O04 VKG doub 443 n n C30 C29 VKG doub 444 n y C30 C24 VKG sing 445 n y N06 C07 VKG sing 446 n n C11 C10 VKG sing 447 n y C21 C38 VKG sing 448 n n C21 C22 VKG doub 449 n n C07 C08 VKG doub 450 n y C29 C27 VKG sing 451 n y N23 C24 VKG sing 452 n n N23 C22 VKG sing 453 n n C38 C36 VKG doub 454 n n C10 C09 VKG doub 455 n y C24 C25 VKG doub 456 n y C08 C09 VKG sing 457 n y C22 N32 VKG sing 458 n n C27 I28 VKG sing 459 n n C27 C26 VKG doub 460 n y C36 C34 VKG sing 461 n n C36 C37 VKG sing 462 n n C25 C26 VKG sing 463 n y N32 C34 VKG sing 464 n n N32 C33 VKG sing 465 n n C34 O35 VKG doub 466 n n C01 H1 VKG sing 467 n n C01 H2 VKG sing 468 n n C01 H3 VKG sing 469 n n C08 H4 VKG sing 470 n n C09 H5 VKG sing 471 n n C10 H6 VKG sing 472 n n C16 H7 VKG sing 473 n n C17 H8 VKG sing 474 n n C17 H9 VKG sing 475 n n C18 H10 VKG sing 476 n n C18 H11 VKG sing 477 n n C25 H12 VKG sing 478 n n C26 H13 VKG sing 479 n n C29 H14 VKG sing 480 n n C33 H15 VKG sing 481 n n C33 H16 VKG sing 482 n n C33 H17 VKG sing 483 n n C37 H18 VKG sing 484 n n C37 H19 VKG sing 485 n n C37 H20 VKG sing 486 n n C39 H21 VKG sing 487 n n N02 H22 VKG sing 488 n n N06 H23 VKG sing 489 n n N23 H24 VKG sing 490 n n # _atom_sites.entry_id 7JV1 _atom_sites.fract_transf_matrix[1][1] 0.007299 _atom_sites.fract_transf_matrix[1][2] 0.004214 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008428 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP D 1 901 901 ANP ANP . D 4 MG D 1 902 1001 MG MG . E 3 ANP C 1 401 401 ANP ANP . F 5 VKG C 1 402 501 VKG 951 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 VKG . . . F 5 -20.641 48.024 6.212 1 184.18 ? C01 VKG 402 C 1 HETATM 2 C C07 VKG . . . F 5 -18.872 47.009 8.941 1 201.53 ? C07 VKG 402 C 1 HETATM 3 C C08 VKG . . . F 5 -20.046 46.668 9.619 1 195.85 ? C08 VKG 402 C 1 HETATM 4 C C09 VKG . . . F 5 -20.34 45.335 9.901 1 195.22 ? C09 VKG 402 C 1 HETATM 5 C C10 VKG . . . F 5 -19.445 44.347 9.49 1 191.98 ? C10 VKG 402 C 1 HETATM 6 C C11 VKG . . . F 5 -18.267 44.68 8.804 1 194.45 ? C11 VKG 402 C 1 HETATM 7 C C13 VKG . . . F 5 -17.783 43.034 7.3 1 193.47 ? C13 VKG 402 C 1 HETATM 8 C C16 VKG . . . F 5 -17.45 41.355 5.569 1 195.3 ? C16 VKG 402 C 1 HETATM 9 C C17 VKG . . . F 5 -16.292 41.72 4.626 1 187.37 ? C17 VKG 402 C 1 HETATM 10 C C18 VKG . . . F 5 -17.726 41.775 4.12 1 191.59 ? C18 VKG 402 C 1 HETATM 11 C C19 VKG . . . F 5 -16.132 41.412 7.624 1 191.4 ? C19 VKG 402 C 1 HETATM 12 C C21 VKG . . . F 5 -15.786 41.984 8.891 1 195.44 ? C21 VKG 402 C 1 HETATM 13 C C22 VKG . . . F 5 -14.734 41.366 9.654 1 195.64 ? C22 VKG 402 C 1 HETATM 14 C C24 VKG . . . F 5 -14.4 38.776 9.502 1 198.01 ? C24 VKG 402 C 1 HETATM 15 C C25 VKG . . . F 5 -14.238 38.377 10.829 1 201.09 ? C25 VKG 402 C 1 HETATM 16 C C26 VKG . . . F 5 -14.553 37.091 11.236 1 213.45 ? C26 VKG 402 C 1 HETATM 17 C C27 VKG . . . F 5 -15.028 36.171 10.317 1 226.55 ? C27 VKG 402 C 1 HETATM 18 C C29 VKG . . . F 5 -15.193 36.544 8.984 1 217.43 ? C29 VKG 402 C 1 HETATM 19 C C30 VKG . . . F 5 -14.878 37.845 8.574 1 205.12 ? C30 VKG 402 C 1 HETATM 20 C C33 VKG . . . F 5 -13.319 41.325 11.67 1 189.2 ? C33 VKG 402 C 1 HETATM 21 C C34 VKG . . . F 5 -15.024 42.987 11.338 1 199.05 ? C34 VKG 402 C 1 HETATM 22 C C36 VKG . . . F 5 -16.063 43.628 10.636 1 201.52 ? C36 VKG 402 C 1 HETATM 23 C C37 VKG . . . F 5 -16.644 44.857 11.37 1 196.65 ? C37 VKG 402 C 1 HETATM 24 C C38 VKG . . . F 5 -16.476 43.097 9.326 1 197.12 ? C38 VKG 402 C 1 HETATM 25 C C39 VKG . . . F 5 -17.964 46.022 8.517 1 201.33 ? C39 VKG 402 C 1 HETATM 26 F F31 VKG . . . F 5 -15.049 38.192 7.263 1 199.42 ? F31 VKG 402 C 1 HETATM 27 I I28 VKG . . . F 5 -15.484 34.225 10.992 1 451.64 ? I28 VKG 402 C 1 HETATM 28 N N02 VKG . . . F 5 -21.137 48.73 7.4 1 190.33 ? N02 VKG 402 C 1 HETATM 29 N N06 VKG . . . F 5 -18.641 48.434 8.683 1 209.52 ? N06 VKG 402 C 1 HETATM 30 N N12 VKG . . . F 5 -17.484 43.622 8.476 1 192.09 ? N12 VKG 402 C 1 HETATM 31 N N15 VKG . . . F 5 -17.11 41.945 6.881 1 195.23 ? N15 VKG 402 C 1 HETATM 32 N N23 VKG . . . F 5 -14.042 40.168 9.106 1 194.56 ? N23 VKG 402 C 1 HETATM 33 N N32 VKG . . . F 5 -14.396 41.9 10.846 1 194.74 ? N32 VKG 402 C 1 HETATM 34 O O04 VKG . . . F 5 -20.69 49.674 9.814 1 195.48 ? O04 VKG 402 C 1 HETATM 35 O O05 VKG . . . F 5 -19.654 50.798 8.144 1 207.67 ? O05 VKG 402 C 1 HETATM 36 O O14 VKG . . . F 5 -18.646 43.492 6.621 1 193.25 ? O14 VKG 402 C 1 HETATM 37 O O20 VKG . . . F 5 -15.539 40.453 7.252 1 186.69 ? O20 VKG 402 C 1 HETATM 38 O O35 VKG . . . F 5 -14.691 43.421 12.399 1 195.81 ? O35 VKG 402 C 1 HETATM 39 S S03 VKG . . . F 5 -20.035 49.436 8.522 1 274.54 ? S03 VKG 402 C 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 39 #