data_7JV5 # _model_server_result.job_id 8coF_pAis5XEKwOoPIxogg _model_server_result.datetime_utc '2024-10-11 02:22:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jv5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":503}' # _entry.id 7JV5 # _exptl.entry_id 7JV5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JV5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JV5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N ? 7 I N N ? 7 J N N ? 7 K N N ? 7 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 144 R CYS 96 1_555 A SG CYS 234 R CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 346 R CYS 298 1_555 A SG CYS 355 R CYS 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 E SG CYS 23 N CYS 22 1_555 E SG CYS 97 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 E SG CYS 100 N CYS 99 1_555 E SG CYS 108 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7JV5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 SK0 R 1 501 500 SK0 SK0 . G 7 CLR R 1 502 609 CLR CLR . H 7 CLR R 1 503 610 CLR CLR . I 7 CLR R 1 504 611 CLR CLR . J 7 CLR R 1 505 612 CLR CLR . K 7 CLR R 1 506 613 CLR CLR . L 7 CLR R 1 507 614 CLR CLR . M 8 PLM R 1 508 615 PLM PLM . N 8 PLM R 1 509 616 PLM PLM . O 8 PLM R 1 510 617 PLM PLM . P 8 PLM R 1 511 618 PLM PLM . Q 8 PLM R 1 512 619 PLM PLM . R 8 PLM R 1 513 620 PLM PLM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . H 7 63.918 107.029 77.738 1 111.81 ? C1 CLR 503 R 1 HETATM 2 C C2 CLR . . . H 7 63.152 107.243 76.43 1 74.99 ? C2 CLR 503 R 1 HETATM 3 C C3 CLR . . . H 7 62.113 108.342 76.634 1 107.92 ? C3 CLR 503 R 1 HETATM 4 C C4 CLR . . . H 7 62.857 109.661 76.848 1 100.21 ? C4 CLR 503 R 1 HETATM 5 C C5 CLR . . . H 7 63.773 109.511 78.053 1 139.25 ? C5 CLR 503 R 1 HETATM 6 C C6 CLR . . . H 7 63.749 110.448 78.958 1 112.63 ? C6 CLR 503 R 1 HETATM 7 C C7 CLR . . . H 7 64.593 110.443 80.203 1 98.52 ? C7 CLR 503 R 1 HETATM 8 C C8 CLR . . . H 7 65.767 109.46 80.094 1 124.34 ? C8 CLR 503 R 1 HETATM 9 C C9 CLR . . . H 7 65.231 108.127 79.552 1 149.77 ? C9 CLR 503 R 1 HETATM 10 C C10 CLR . . . H 7 64.661 108.306 78.151 1 168.63 ? C10 CLR 503 R 1 HETATM 11 C C11 CLR . . . H 7 66.283 107.018 79.594 1 116.2 ? C11 CLR 503 R 1 HETATM 12 C C12 CLR . . . H 7 66.865 106.861 81.006 1 109.43 ? C12 CLR 503 R 1 HETATM 13 C C13 CLR . . . H 7 67.462 108.179 81.523 1 165.54 ? C13 CLR 503 R 1 HETATM 14 C C14 CLR . . . H 7 66.309 109.233 81.502 1 100.27 ? C14 CLR 503 R 1 HETATM 15 C C15 CLR . . . H 7 66.959 110.444 82.181 1 82.81 ? C15 CLR 503 R 1 HETATM 16 C C16 CLR . . . H 7 67.707 109.771 83.363 1 75.71 ? C16 CLR 503 R 1 HETATM 17 C C17 CLR . . . H 7 67.907 108.267 82.998 1 133.34 ? C17 CLR 503 R 1 HETATM 18 C C18 CLR . . . H 7 68.595 108.644 80.595 1 216.87 ? C18 CLR 503 R 1 HETATM 19 C C19 CLR . . . H 7 65.825 108.53 77.179 1 198.37 ? C19 CLR 503 R 1 HETATM 20 C C20 CLR . . . H 7 69.353 107.791 83.301 1 112.55 ? C20 CLR 503 R 1 HETATM 21 C C21 CLR . . . H 7 69.407 106.27 83.508 1 47.28 ? C21 CLR 503 R 1 HETATM 22 C C22 CLR . . . H 7 69.902 108.434 84.586 1 107.19 ? C22 CLR 503 R 1 HETATM 23 C C23 CLR . . . H 7 71.316 107.941 84.908 1 79.31 ? C23 CLR 503 R 1 HETATM 24 C C24 CLR . . . H 7 71.717 108.42 86.306 1 66.41 ? C24 CLR 503 R 1 HETATM 25 C C25 CLR . . . H 7 73.085 107.848 86.693 1 84.37 ? C25 CLR 503 R 1 HETATM 26 C C26 CLR . . . H 7 73.455 108.331 88.096 1 101.34 ? C26 CLR 503 R 1 HETATM 27 C C27 CLR . . . H 7 73.034 106.318 86.689 1 77.51 ? C27 CLR 503 R 1 HETATM 28 O O1 CLR . . . H 7 61.283 108.437 75.474 1 69.67 ? O1 CLR 503 R 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #