data_7JV9 # _model_server_result.job_id Z7kkprZQ3nt7NZAc9sMCMw _model_server_result.datetime_utc '2024-12-23 18:04:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jv9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":602}' # _entry.id 7JV9 # _exptl.entry_id 7JV9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JV9 _cell.length_a 231.933 _cell.length_b 93.794 _cell.length_c 54.922 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JV9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,O 1 1 B,I,J,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 27 A CYS 51 1_555 A SG CYS 33 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 329 A CYS 353 1_555 A SG CYS 334 A CYS 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 341 A CYS 365 1_555 A SG CYS 363 A CYS 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 A SG CYS 452 A CYS 476 1_555 A SG CYS 455 A CYS 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 B SG CYS 27 B CYS 51 1_555 B SG CYS 33 B CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf6 B SG CYS 329 B CYS 353 1_555 B SG CYS 334 B CYS 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf7 B SG CYS 341 B CYS 365 1_555 B SG CYS 363 B CYS 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf8 B SG CYS 452 B CYS 476 1_555 B SG CYS 455 B CYS 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A ND2 ASN 287 A ASN 311 1_555 F C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale2 B ND2 ASN 287 B ASN 311 1_555 L C1 NAG . B NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.488 ? metalc ? metalc1 A OD1 ASP 12 A ASP 36 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc2 A NE2 HIS 14 A HIS 38 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc3 A OD2 ASP 61 A ASP 85 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc4 A OD2 ASP 61 A ASP 85 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc5 A OD1 ASN 93 A ASN 117 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc6 A O ASN 189 A ASN 213 1_555 E CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc7 A NE2 HIS 196 A HIS 220 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc8 A OD1 ASP 213 A ASP 237 1_555 E CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc9 A OD2 ASP 213 A ASP 237 1_555 E CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc10 A ND1 HIS 219 A HIS 243 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc11 A O GLY 274 A GLY 298 1_555 E CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc12 D ZN ZN . A ZN 602 1_555 G O29 VPG . A VPG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc13 B OD1 ASP 12 B ASP 36 1_555 I ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc14 B NE2 HIS 14 B HIS 38 1_555 I ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc15 B OD2 ASP 61 B ASP 85 1_555 I ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc16 B OD2 ASP 61 B ASP 85 1_555 J ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc17 B OD1 ASN 93 B ASN 117 1_555 J ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc18 B O ASN 189 B ASN 213 1_555 K CA CA . B CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc19 B NE2 HIS 196 B HIS 220 1_555 J ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc20 B OD1 ASP 213 B ASP 237 1_555 K CA CA . B CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc21 B OD2 ASP 213 B ASP 237 1_555 K CA CA . B CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc22 B ND1 HIS 219 B HIS 243 1_555 J ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc23 B O GLY 274 B GLY 298 1_555 K CA CA . B CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc24 I ZN ZN . B ZN 601 1_555 M O28 VPG . B VPG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc25 J ZN ZN . B ZN 602 1_555 M O29 VPG . B VPG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7JV9 _atom_sites.fract_transf_matrix[1][1] 0.004312 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010662 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018208 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 601 601 ZN ZN . D 2 ZN A 1 602 602 ZN ZN . E 3 CA A 1 603 606 CA CA . F 4 NAG A 1 604 610 NAG NAG . G 5 VPG A 1 605 1 VPG INX . H 6 PO4 A 1 606 4 PO4 PO4 . I 2 ZN B 1 601 601 ZN ZN . J 2 ZN B 1 602 602 ZN ZN . K 3 CA B 1 603 606 CA CA . L 4 NAG B 1 604 610 NAG NAG . M 5 VPG B 1 605 2 VPG INX . N 6 PO4 B 1 606 5 PO4 PO4 . O 7 HOH A 1 701 7 HOH HOH . O 7 HOH A 2 702 141 HOH HOH . O 7 HOH A 3 703 57 HOH HOH . O 7 HOH A 4 704 152 HOH HOH . O 7 HOH A 5 705 140 HOH HOH . O 7 HOH A 6 706 12 HOH HOH . O 7 HOH A 7 707 138 HOH HOH . O 7 HOH A 8 708 139 HOH HOH . O 7 HOH A 9 709 144 HOH HOH . O 7 HOH A 10 710 19 HOH HOH . O 7 HOH A 11 711 92 HOH HOH . O 7 HOH A 12 712 153 HOH HOH . O 7 HOH A 13 713 72 HOH HOH . O 7 HOH A 14 714 142 HOH HOH . O 7 HOH A 15 715 1 HOH HOH . O 7 HOH A 16 716 36 HOH HOH . O 7 HOH A 17 717 143 HOH HOH . O 7 HOH A 18 718 38 HOH HOH . O 7 HOH A 19 719 74 HOH HOH . O 7 HOH A 20 720 52 HOH HOH . O 7 HOH A 21 721 145 HOH HOH . O 7 HOH A 22 722 154 HOH HOH . O 7 HOH A 23 723 149 HOH HOH . O 7 HOH A 24 724 98 HOH HOH . O 7 HOH A 25 725 11 HOH HOH . O 7 HOH A 26 726 150 HOH HOH . O 7 HOH A 27 727 151 HOH HOH . O 7 HOH A 28 728 147 HOH HOH . O 7 HOH A 29 729 146 HOH HOH . O 7 HOH A 30 730 148 HOH HOH . P 7 HOH B 1 701 32 HOH HOH . P 7 HOH B 2 702 4 HOH HOH . P 7 HOH B 3 703 155 HOH HOH . P 7 HOH B 4 704 27 HOH HOH . P 7 HOH B 5 705 156 HOH HOH . P 7 HOH B 6 706 157 HOH HOH . P 7 HOH B 7 707 54 HOH HOH . P 7 HOH B 8 708 41 HOH HOH . P 7 HOH B 9 709 3 HOH HOH . P 7 HOH B 10 710 15 HOH HOH . P 7 HOH B 11 711 161 HOH HOH . P 7 HOH B 12 712 78 HOH HOH . P 7 HOH B 13 713 37 HOH HOH . P 7 HOH B 14 714 162 HOH HOH . P 7 HOH B 15 715 23 HOH HOH . P 7 HOH B 16 716 34 HOH HOH . P 7 HOH B 17 717 159 HOH HOH . P 7 HOH B 18 718 33 HOH HOH . P 7 HOH B 19 719 22 HOH HOH . P 7 HOH B 20 720 40 HOH HOH . P 7 HOH B 21 721 126 HOH HOH . P 7 HOH B 22 722 160 HOH HOH . P 7 HOH B 23 723 31 HOH HOH . P 7 HOH B 24 724 14 HOH HOH . P 7 HOH B 25 725 158 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 2 _atom_site.Cartn_x 87.818 _atom_site.Cartn_y -27.359 _atom_site.Cartn_z -24.568 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.76 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 602 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #