data_7JVP # _model_server_result.job_id a46ScC45v7PEPP5uY-9oSA _model_server_result.datetime_utc '2024-10-20 09:17:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jvp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":510}' # _entry.id 7JVP # _exptl.entry_id 7JVP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 256.424 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JVP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JVP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 M N N ? 8 N N N ? 8 O N N ? 8 P N N ? 8 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 144 R CYS 96 1_555 A SG CYS 234 R CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 346 R CYS 298 1_555 A SG CYS 355 R CYS 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 E SG CYS 23 N CYS 22 1_555 E SG CYS 97 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7JVP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 SK9 R 1 501 500 SK9 SK9 . G 7 CLR R 1 502 609 CLR CLR . H 7 CLR R 1 503 610 CLR CLR . I 7 CLR R 1 504 611 CLR CLR . J 7 CLR R 1 505 612 CLR CLR . K 7 CLR R 1 506 613 CLR CLR . L 7 CLR R 1 507 614 CLR CLR . M 8 PLM R 1 508 615 PLM PLM . N 8 PLM R 1 509 616 PLM PLM . O 8 PLM R 1 510 617 PLM PLM . P 8 PLM R 1 511 618 PLM PLM . Q 8 PLM R 1 512 619 PLM PLM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . O 8 113.149 98.983 86.424 1 59.32 ? C1 PLM 510 R 1 HETATM 2 O O1 PLM . . . O 8 111.918 99.174 86.242 1 59.32 ? O1 PLM 510 R 1 HETATM 3 O O2 PLM . . . O 8 113.991 99.753 85.891 1 59.32 ? O2 PLM 510 R 1 HETATM 4 C C2 PLM . . . O 8 113.621 97.816 87.287 1 59.32 ? C2 PLM 510 R 1 HETATM 5 C C3 PLM . . . O 8 113.576 98.139 88.779 1 59.32 ? C3 PLM 510 R 1 HETATM 6 C C4 PLM . . . O 8 114.189 97.028 89.628 1 59.32 ? C4 PLM 510 R 1 HETATM 7 C C5 PLM . . . O 8 113.812 97.143 91.103 1 59.32 ? C5 PLM 510 R 1 HETATM 8 C C6 PLM . . . O 8 114.403 96.006 91.933 1 59.32 ? C6 PLM 510 R 1 HETATM 9 C C7 PLM . . . O 8 113.796 95.921 93.332 1 59.32 ? C7 PLM 510 R 1 HETATM 10 C C8 PLM . . . O 8 114.384 94.765 94.137 1 59.32 ? C8 PLM 510 R 1 HETATM 11 C C9 PLM . . . O 8 113.512 94.372 95.327 1 59.32 ? C9 PLM 510 R 1 HETATM 12 C CA PLM . . . O 8 113.981 93.065 95.963 1 59.32 ? CA PLM 510 R 1 HETATM 13 C CB PLM . . . O 8 112.994 92.523 96.994 1 59.32 ? CB PLM 510 R 1 HETATM 14 C CC PLM . . . O 8 113.31 91.078 97.375 1 59.32 ? CC PLM 510 R 1 HETATM 15 C CD PLM . . . O 8 112.275 90.486 98.329 1 59.32 ? CD PLM 510 R 1 HETATM 16 C CE PLM . . . O 8 112.241 88.961 98.265 1 59.32 ? CE PLM 510 R 1 HETATM 17 C CF PLM . . . O 8 110.942 88.387 98.827 1 59.32 ? CF PLM 510 R 1 HETATM 18 C CG PLM . . . O 8 110.917 86.861 98.783 1 59.32 ? CG PLM 510 R 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 18 #