data_7JVW # _model_server_result.job_id ploTZYueFW-P1v5_fyZLoQ _model_server_result.datetime_utc '2024-11-24 13:02:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jvw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 7JVW # _exptl.entry_id 7JVW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.84 _cell.angle_gamma 90 _cell.entry_id 7JVW _cell.length_a 52.98 _cell.length_b 82.75 _cell.length_c 94.52 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JVW _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1 B,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 176 A ASP 176 1_555 E K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc2 A OD1 ASP 176 A ASP 176 1_555 E K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc3 A OD1 ASP 178 A ASP 178 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc4 A OD2 ASP 178 A ASP 178 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc5 A O ASP 178 A ASP 178 1_555 E K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc6 A ND1 HIS 180 A HIS 180 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc7 A O HIS 180 A HIS 180 1_555 E K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc8 A O PHE 189 A PHE 189 1_555 F K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc9 A O THR 192 A THR 192 1_555 F K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? metalc ? metalc10 A O VAL 195 A VAL 195 1_555 F K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc11 A OG SER 199 A SER 199 1_555 E K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.092 ? metalc ? metalc12 A O LEU 200 A LEU 200 1_555 E K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc13 A O TYR 225 A TYR 225 1_555 F K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.154 ? metalc ? metalc14 A OD2 ASP 267 A ASP 267 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc15 C O2 B3N . A B3N 501 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc16 C O4 B3N . A B3N 501 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc17 F K K . A K 504 1_555 K O HOH . A HOH 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? metalc ? metalc18 F K K . A K 504 1_555 K O HOH . A HOH 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.976 ? metalc ? metalc19 B O ASP 176 B ASP 176 1_555 I K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc20 B OD1 ASP 176 B ASP 176 1_555 I K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? metalc ? metalc21 B OD2 ASP 178 B ASP 178 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc22 B O ASP 178 B ASP 178 1_555 I K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc23 B ND1 HIS 180 B HIS 180 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc24 B O HIS 180 B HIS 180 1_555 I K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc25 B O PHE 189 B PHE 189 1_555 J K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc26 B O THR 192 B THR 192 1_555 J K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc27 B O VAL 195 B VAL 195 1_555 J K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc28 B OG SER 199 B SER 199 1_555 I K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.882 ? metalc ? metalc29 B O LEU 200 B LEU 200 1_555 I K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc30 B O TYR 225 B TYR 225 1_555 J K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.055 ? metalc ? metalc31 B OD2 ASP 267 B ASP 267 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc32 G O2 B3N . B B3N 401 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc33 G O4 B3N . B B3N 401 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc34 J K K . B K 404 1_555 L O HOH . B HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc35 J K K . B K 404 1_555 L O HOH . B HOH 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7JVW _atom_sites.fract_transf_matrix[1][1] 0.018875 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002936 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012085 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010707 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B3N A 1 501 501 B3N B3N . D 3 ZN A 1 502 400 ZN ZN . E 4 K A 1 503 401 K K . F 4 K A 1 504 402 K K . G 2 B3N B 1 401 502 B3N B3N . H 3 ZN B 1 402 401 ZN ZN . I 4 K B 1 403 403 K K . J 4 K B 1 404 404 K K . K 5 HOH A 1 601 86 HOH HOH . K 5 HOH A 2 602 13 HOH HOH . K 5 HOH A 3 603 126 HOH HOH . K 5 HOH A 4 604 101 HOH HOH . K 5 HOH A 5 605 43 HOH HOH . K 5 HOH A 6 606 10 HOH HOH . K 5 HOH A 7 607 132 HOH HOH . K 5 HOH A 8 608 162 HOH HOH . K 5 HOH A 9 609 20 HOH HOH . K 5 HOH A 10 610 42 HOH HOH . K 5 HOH A 11 611 21 HOH HOH . K 5 HOH A 12 612 48 HOH HOH . K 5 HOH A 13 613 24 HOH HOH . K 5 HOH A 14 614 108 HOH HOH . K 5 HOH A 15 615 99 HOH HOH . K 5 HOH A 16 616 6 HOH HOH . K 5 HOH A 17 617 64 HOH HOH . K 5 HOH A 18 618 85 HOH HOH . K 5 HOH A 19 619 16 HOH HOH . K 5 HOH A 20 620 14 HOH HOH . K 5 HOH A 21 621 40 HOH HOH . K 5 HOH A 22 622 51 HOH HOH . K 5 HOH A 23 623 52 HOH HOH . K 5 HOH A 24 624 90 HOH HOH . K 5 HOH A 25 625 79 HOH HOH . K 5 HOH A 26 626 121 HOH HOH . K 5 HOH A 27 627 11 HOH HOH . K 5 HOH A 28 628 22 HOH HOH . K 5 HOH A 29 629 164 HOH HOH . K 5 HOH A 30 630 71 HOH HOH . K 5 HOH A 31 631 35 HOH HOH . K 5 HOH A 32 632 1 HOH HOH . K 5 HOH A 33 633 12 HOH HOH . K 5 HOH A 34 634 61 HOH HOH . K 5 HOH A 35 635 142 HOH HOH . K 5 HOH A 36 636 19 HOH HOH . K 5 HOH A 37 637 38 HOH HOH . K 5 HOH A 38 638 5 HOH HOH . K 5 HOH A 39 639 106 HOH HOH . K 5 HOH A 40 640 166 HOH HOH . K 5 HOH A 41 641 107 HOH HOH . K 5 HOH A 42 642 153 HOH HOH . K 5 HOH A 43 643 144 HOH HOH . K 5 HOH A 44 644 59 HOH HOH . K 5 HOH A 45 645 46 HOH HOH . K 5 HOH A 46 646 97 HOH HOH . K 5 HOH A 47 647 75 HOH HOH . K 5 HOH A 48 648 117 HOH HOH . K 5 HOH A 49 649 58 HOH HOH . K 5 HOH A 50 650 129 HOH HOH . K 5 HOH A 51 651 54 HOH HOH . K 5 HOH A 52 652 73 HOH HOH . K 5 HOH A 53 653 74 HOH HOH . K 5 HOH A 54 654 55 HOH HOH . K 5 HOH A 55 655 84 HOH HOH . K 5 HOH A 56 656 123 HOH HOH . K 5 HOH A 57 657 116 HOH HOH . K 5 HOH A 58 658 94 HOH HOH . K 5 HOH A 59 659 34 HOH HOH . K 5 HOH A 60 660 168 HOH HOH . K 5 HOH A 61 661 167 HOH HOH . K 5 HOH A 62 662 140 HOH HOH . K 5 HOH A 63 663 32 HOH HOH . K 5 HOH A 64 664 169 HOH HOH . K 5 HOH A 65 665 103 HOH HOH . K 5 HOH A 66 666 96 HOH HOH . K 5 HOH A 67 667 104 HOH HOH . K 5 HOH A 68 668 41 HOH HOH . K 5 HOH A 69 669 118 HOH HOH . K 5 HOH A 70 670 128 HOH HOH . K 5 HOH A 71 671 72 HOH HOH . K 5 HOH A 72 672 136 HOH HOH . K 5 HOH A 73 673 139 HOH HOH . K 5 HOH A 74 674 47 HOH HOH . K 5 HOH A 75 675 163 HOH HOH . K 5 HOH A 76 676 149 HOH HOH . K 5 HOH A 77 677 56 HOH HOH . K 5 HOH A 78 678 165 HOH HOH . K 5 HOH A 79 679 125 HOH HOH . K 5 HOH A 80 680 65 HOH HOH . K 5 HOH A 81 681 89 HOH HOH . K 5 HOH A 82 682 151 HOH HOH . L 5 HOH B 1 501 25 HOH HOH . L 5 HOH B 2 502 45 HOH HOH . L 5 HOH B 3 503 141 HOH HOH . L 5 HOH B 4 504 26 HOH HOH . L 5 HOH B 5 505 28 HOH HOH . L 5 HOH B 6 506 15 HOH HOH . L 5 HOH B 7 507 146 HOH HOH . L 5 HOH B 8 508 7 HOH HOH . L 5 HOH B 9 509 31 HOH HOH . L 5 HOH B 10 510 78 HOH HOH . L 5 HOH B 11 511 39 HOH HOH . L 5 HOH B 12 512 158 HOH HOH . L 5 HOH B 13 513 70 HOH HOH . L 5 HOH B 14 514 156 HOH HOH . L 5 HOH B 15 515 30 HOH HOH . L 5 HOH B 16 516 27 HOH HOH . L 5 HOH B 17 517 160 HOH HOH . L 5 HOH B 18 518 8 HOH HOH . L 5 HOH B 19 519 69 HOH HOH . L 5 HOH B 20 520 114 HOH HOH . L 5 HOH B 21 521 62 HOH HOH . L 5 HOH B 22 522 77 HOH HOH . L 5 HOH B 23 523 50 HOH HOH . L 5 HOH B 24 524 115 HOH HOH . L 5 HOH B 25 525 154 HOH HOH . L 5 HOH B 26 526 161 HOH HOH . L 5 HOH B 27 527 80 HOH HOH . L 5 HOH B 28 528 60 HOH HOH . L 5 HOH B 29 529 110 HOH HOH . L 5 HOH B 30 530 147 HOH HOH . L 5 HOH B 31 531 150 HOH HOH . L 5 HOH B 32 532 29 HOH HOH . L 5 HOH B 33 533 17 HOH HOH . L 5 HOH B 34 534 37 HOH HOH . L 5 HOH B 35 535 63 HOH HOH . L 5 HOH B 36 536 23 HOH HOH . L 5 HOH B 37 537 53 HOH HOH . L 5 HOH B 38 538 76 HOH HOH . L 5 HOH B 39 539 3 HOH HOH . L 5 HOH B 40 540 155 HOH HOH . L 5 HOH B 41 541 174 HOH HOH . L 5 HOH B 42 542 138 HOH HOH . L 5 HOH B 43 543 83 HOH HOH . L 5 HOH B 44 544 93 HOH HOH . L 5 HOH B 45 545 67 HOH HOH . L 5 HOH B 46 546 100 HOH HOH . L 5 HOH B 47 547 82 HOH HOH . L 5 HOH B 48 548 44 HOH HOH . L 5 HOH B 49 549 120 HOH HOH . L 5 HOH B 50 550 143 HOH HOH . L 5 HOH B 51 551 173 HOH HOH . L 5 HOH B 52 552 170 HOH HOH . L 5 HOH B 53 553 81 HOH HOH . L 5 HOH B 54 554 171 HOH HOH . L 5 HOH B 55 555 36 HOH HOH . L 5 HOH B 56 556 98 HOH HOH . L 5 HOH B 57 557 68 HOH HOH . L 5 HOH B 58 558 172 HOH HOH . L 5 HOH B 59 559 66 HOH HOH . L 5 HOH B 60 560 131 HOH HOH . L 5 HOH B 61 561 152 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 16.609 _atom_site.Cartn_y 24.006 _atom_site.Cartn_z 17.309 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.42 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #