data_7JW9 # _model_server_result.job_id LxdmhlXC7NWl5gqCWIkUAg _model_server_result.datetime_utc '2024-11-01 17:24:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jw9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":402}' # _entry.id 7JW9 # _exptl.entry_id 7JW9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JW9 _cell.length_a 92.47 _cell.length_b 92.47 _cell.length_c 320.54 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JW9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall 'P 61' _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 K N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 296 A ALA 273 1_555 G NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc2 A OD1 ASP 299 A ASP 276 1_555 G NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? metalc ? metalc3 G NA NA . A NA 403 1_455 C OG SER 147 C SER 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc4 G NA NA . A NA 403 1_555 P O HOH . C HOH 528 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 3.042 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 91 n n N1 C10 FMN doub 92 n n C2 O2 FMN doub 93 n n C2 N3 FMN sing 94 n n N3 C4 FMN sing 95 n n N3 HN3 FMN sing 96 n n C4 O4 FMN doub 97 n n C4 C4A FMN sing 98 n n C4A N5 FMN doub 99 n n C4A C10 FMN sing 100 n n N5 C5A FMN sing 101 n n C5A C6 FMN doub 102 n y C5A C9A FMN sing 103 n y C6 C7 FMN sing 104 n y C6 H6 FMN sing 105 n n C7 C7M FMN sing 106 n n C7 C8 FMN doub 107 n y C7M HM71 FMN sing 108 n n C7M HM72 FMN sing 109 n n C7M HM73 FMN sing 110 n n C8 C8M FMN sing 111 n n C8 C9 FMN sing 112 n y C8M HM81 FMN sing 113 n n C8M HM82 FMN sing 114 n n C8M HM83 FMN sing 115 n n C9 C9A FMN doub 116 n y C9 H9 FMN sing 117 n n C9A N10 FMN sing 118 n n N10 C10 FMN sing 119 n n N10 C1' FMN sing 120 n n C1' C2' FMN sing 121 n n C1' "H1'1" FMN sing 122 n n C1' "H1'2" FMN sing 123 n n C2' O2' FMN sing 124 n n C2' C3' FMN sing 125 n n C2' H2' FMN sing 126 n n O2' HO2' FMN sing 127 n n C3' O3' FMN sing 128 n n C3' C4' FMN sing 129 n n C3' H3' FMN sing 130 n n O3' HO3' FMN sing 131 n n C4' O4' FMN sing 132 n n C4' C5' FMN sing 133 n n C4' H4' FMN sing 134 n n O4' HO4' FMN sing 135 n n C5' O5' FMN sing 136 n n C5' "H5'1" FMN sing 137 n n C5' "H5'2" FMN sing 138 n n O5' P FMN sing 139 n n P O1P FMN doub 140 n n P O2P FMN sing 141 n n P O3P FMN sing 142 n n O2P HOP2 FMN sing 143 n n O3P HOP3 FMN sing 144 n n # _atom_sites.entry_id 7JW9 _atom_sites.fract_transf_matrix[1][1] 0.010814 _atom_sites.fract_transf_matrix[1][2] 0.006244 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012487 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00312 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 03S A 1 401 401 03S 03S . F 3 FMN A 1 402 501 FMN FMN . G 4 NA A 1 403 1 NA NA . H 2 03S B 1 401 401 03S 03S . I 3 FMN B 1 402 501 FMN FMN . J 2 03S C 1 401 401 03S 03S . K 3 FMN C 1 402 501 FMN FMN . L 2 03S D 1 401 401 03S 03S . M 3 FMN D 1 402 501 FMN FMN . N 5 HOH A 1 501 5 HOH HOH . N 5 HOH A 2 502 118 HOH HOH . N 5 HOH A 3 503 101 HOH HOH . N 5 HOH A 4 504 13 HOH HOH . N 5 HOH A 5 505 1 HOH HOH . N 5 HOH A 6 506 38 HOH HOH . N 5 HOH A 7 507 114 HOH HOH . N 5 HOH A 8 508 47 HOH HOH . N 5 HOH A 9 509 138 HOH HOH . N 5 HOH A 10 510 66 HOH HOH . N 5 HOH A 11 511 15 HOH HOH . N 5 HOH A 12 512 46 HOH HOH . N 5 HOH A 13 513 23 HOH HOH . N 5 HOH A 14 514 21 HOH HOH . N 5 HOH A 15 515 87 HOH HOH . N 5 HOH A 16 516 104 HOH HOH . N 5 HOH A 17 517 12 HOH HOH . N 5 HOH A 18 518 83 HOH HOH . N 5 HOH A 19 519 37 HOH HOH . N 5 HOH A 20 520 14 HOH HOH . N 5 HOH A 21 521 86 HOH HOH . N 5 HOH A 22 522 25 HOH HOH . N 5 HOH A 23 523 130 HOH HOH . N 5 HOH A 24 524 108 HOH HOH . N 5 HOH A 25 525 96 HOH HOH . N 5 HOH A 26 526 94 HOH HOH . N 5 HOH A 27 527 79 HOH HOH . N 5 HOH A 28 528 107 HOH HOH . N 5 HOH A 29 529 43 HOH HOH . N 5 HOH A 30 530 120 HOH HOH . N 5 HOH A 31 531 65 HOH HOH . N 5 HOH A 32 532 88 HOH HOH . N 5 HOH A 33 533 103 HOH HOH . N 5 HOH A 34 534 124 HOH HOH . O 5 HOH B 1 501 29 HOH HOH . O 5 HOH B 2 502 97 HOH HOH . O 5 HOH B 3 503 16 HOH HOH . O 5 HOH B 4 504 8 HOH HOH . O 5 HOH B 5 505 19 HOH HOH . O 5 HOH B 6 506 77 HOH HOH . O 5 HOH B 7 507 57 HOH HOH . O 5 HOH B 8 508 51 HOH HOH . O 5 HOH B 9 509 39 HOH HOH . O 5 HOH B 10 510 53 HOH HOH . O 5 HOH B 11 511 58 HOH HOH . O 5 HOH B 12 512 133 HOH HOH . O 5 HOH B 13 513 18 HOH HOH . O 5 HOH B 14 514 50 HOH HOH . O 5 HOH B 15 515 98 HOH HOH . O 5 HOH B 16 516 100 HOH HOH . O 5 HOH B 17 517 35 HOH HOH . O 5 HOH B 18 518 17 HOH HOH . O 5 HOH B 19 519 105 HOH HOH . O 5 HOH B 20 520 64 HOH HOH . O 5 HOH B 21 521 137 HOH HOH . O 5 HOH B 22 522 126 HOH HOH . O 5 HOH B 23 523 9 HOH HOH . O 5 HOH B 24 524 24 HOH HOH . O 5 HOH B 25 525 113 HOH HOH . O 5 HOH B 26 526 44 HOH HOH . O 5 HOH B 27 527 136 HOH HOH . P 5 HOH C 1 501 3 HOH HOH . P 5 HOH C 2 502 40 HOH HOH . P 5 HOH C 3 503 106 HOH HOH . P 5 HOH C 4 504 110 HOH HOH . P 5 HOH C 5 505 75 HOH HOH . P 5 HOH C 6 506 90 HOH HOH . P 5 HOH C 7 507 49 HOH HOH . P 5 HOH C 8 508 128 HOH HOH . P 5 HOH C 9 509 42 HOH HOH . P 5 HOH C 10 510 4 HOH HOH . P 5 HOH C 11 511 84 HOH HOH . P 5 HOH C 12 512 7 HOH HOH . P 5 HOH C 13 513 56 HOH HOH . P 5 HOH C 14 514 76 HOH HOH . P 5 HOH C 15 515 68 HOH HOH . P 5 HOH C 16 516 85 HOH HOH . P 5 HOH C 17 517 81 HOH HOH . P 5 HOH C 18 518 26 HOH HOH . P 5 HOH C 19 519 74 HOH HOH . P 5 HOH C 20 520 63 HOH HOH . P 5 HOH C 21 521 129 HOH HOH . P 5 HOH C 22 522 123 HOH HOH . P 5 HOH C 23 523 116 HOH HOH . P 5 HOH C 24 524 99 HOH HOH . P 5 HOH C 25 525 60 HOH HOH . P 5 HOH C 26 526 48 HOH HOH . P 5 HOH C 27 527 89 HOH HOH . P 5 HOH C 28 528 62 HOH HOH . P 5 HOH C 29 529 33 HOH HOH . P 5 HOH C 30 530 54 HOH HOH . P 5 HOH C 31 531 20 HOH HOH . P 5 HOH C 32 532 109 HOH HOH . P 5 HOH C 33 533 34 HOH HOH . P 5 HOH C 34 534 95 HOH HOH . P 5 HOH C 35 535 70 HOH HOH . P 5 HOH C 36 536 69 HOH HOH . P 5 HOH C 37 537 134 HOH HOH . P 5 HOH C 38 538 119 HOH HOH . P 5 HOH C 39 539 132 HOH HOH . Q 5 HOH D 1 501 92 HOH HOH . Q 5 HOH D 2 502 127 HOH HOH . Q 5 HOH D 3 503 131 HOH HOH . Q 5 HOH D 4 504 2 HOH HOH . Q 5 HOH D 5 505 10 HOH HOH . Q 5 HOH D 6 506 6 HOH HOH . Q 5 HOH D 7 507 52 HOH HOH . Q 5 HOH D 8 508 82 HOH HOH . Q 5 HOH D 9 509 45 HOH HOH . Q 5 HOH D 10 510 31 HOH HOH . Q 5 HOH D 11 511 30 HOH HOH . Q 5 HOH D 12 512 22 HOH HOH . Q 5 HOH D 13 513 122 HOH HOH . Q 5 HOH D 14 514 111 HOH HOH . Q 5 HOH D 15 515 115 HOH HOH . Q 5 HOH D 16 516 72 HOH HOH . Q 5 HOH D 17 517 80 HOH HOH . Q 5 HOH D 18 518 11 HOH HOH . Q 5 HOH D 19 519 28 HOH HOH . Q 5 HOH D 20 520 27 HOH HOH . Q 5 HOH D 21 521 135 HOH HOH . Q 5 HOH D 22 522 32 HOH HOH . Q 5 HOH D 23 523 61 HOH HOH . Q 5 HOH D 24 524 67 HOH HOH . Q 5 HOH D 25 525 41 HOH HOH . Q 5 HOH D 26 526 59 HOH HOH . Q 5 HOH D 27 527 73 HOH HOH . Q 5 HOH D 28 528 36 HOH HOH . Q 5 HOH D 29 529 78 HOH HOH . Q 5 HOH D 30 530 55 HOH HOH . Q 5 HOH D 31 531 117 HOH HOH . Q 5 HOH D 32 532 91 HOH HOH . Q 5 HOH D 33 533 112 HOH HOH . Q 5 HOH D 34 534 71 HOH HOH . Q 5 HOH D 35 535 121 HOH HOH . Q 5 HOH D 36 536 93 HOH HOH . Q 5 HOH D 37 537 125 HOH HOH . Q 5 HOH D 38 538 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . K 3 -61.305 46.795 40.555 1 57.66 ? N1 FMN 402 C 1 HETATM 2 C C2 FMN . . . K 3 -60.615 46.259 39.55 1 58.31 ? C2 FMN 402 C 1 HETATM 3 O O2 FMN . . . K 3 -61.194 45.488 38.805 1 52.34 ? O2 FMN 402 C 1 HETATM 4 N N3 FMN . . . K 3 -59.322 46.509 39.308 1 56.02 ? N3 FMN 402 C 1 HETATM 5 C C4 FMN . . . K 3 -58.613 47.351 40.095 1 50.19 ? C4 FMN 402 C 1 HETATM 6 O O4 FMN . . . K 3 -57.438 47.578 39.881 1 57.5 ? O4 FMN 402 C 1 HETATM 7 C C4A FMN . . . K 3 -59.328 47.984 41.224 1 48.9 ? C4A FMN 402 C 1 HETATM 8 N N5 FMN . . . K 3 -58.745 48.841 42.018 1 49.67 ? N5 FMN 402 C 1 HETATM 9 C C5A FMN . . . K 3 -59.431 49.436 43.001 1 56.35 ? C5A FMN 402 C 1 HETATM 10 C C6 FMN . . . K 3 -58.792 50.405 43.797 1 45.75 ? C6 FMN 402 C 1 HETATM 11 C C7 FMN . . . K 3 -59.492 51.065 44.76 1 48.27 ? C7 FMN 402 C 1 HETATM 12 C C7M FMN . . . K 3 -58.802 52.119 45.585 1 43.79 ? C7M FMN 402 C 1 HETATM 13 C C8 FMN . . . K 3 -60.837 50.78 44.977 1 43.82 ? C8 FMN 402 C 1 HETATM 14 C C8M FMN . . . K 3 -61.608 51.56 46.012 1 42.22 ? C8M FMN 402 C 1 HETATM 15 C C9 FMN . . . K 3 -61.483 49.821 44.227 1 43.39 ? C9 FMN 402 C 1 HETATM 16 C C9A FMN . . . K 3 -60.798 49.141 43.222 1 52.27 ? C9A FMN 402 C 1 HETATM 17 N N10 FMN . . . K 3 -61.455 48.229 42.415 1 49.25 ? N10 FMN 402 C 1 HETATM 18 C C10 FMN . . . K 3 -60.75 47.641 41.406 1 49 ? C10 FMN 402 C 1 HETATM 19 C C1' FMN . . . K 3 -62.879 47.921 42.602 1 52.54 ? C1' FMN 402 C 1 HETATM 20 C C2' FMN . . . K 3 -63.115 46.783 43.606 1 55.9 ? C2' FMN 402 C 1 HETATM 21 O O2' FMN . . . K 3 -61.854 46.236 44 1 59.75 ? O2' FMN 402 C 1 HETATM 22 C C3' FMN . . . K 3 -63.974 45.656 43.006 1 56.09 ? C3' FMN 402 C 1 HETATM 23 O O3' FMN . . . K 3 -63.523 45.357 41.682 1 58.98 ? O3' FMN 402 C 1 HETATM 24 C C4' FMN . . . K 3 -65.478 45.988 42.966 1 52.98 ? C4' FMN 402 C 1 HETATM 25 O O4' FMN . . . K 3 -65.755 47.09 42.097 1 52.03 ? O4' FMN 402 C 1 HETATM 26 C C5' FMN . . . K 3 -66.029 46.297 44.361 1 49.16 ? C5' FMN 402 C 1 HETATM 27 O O5' FMN . . . K 3 -67.447 46.108 44.316 1 60.8 ? O5' FMN 402 C 1 HETATM 28 P P FMN . . . K 3 -68.485 46.719 45.385 1 45.29 ? P FMN 402 C 1 HETATM 29 O O1P FMN . . . K 3 -69.866 46.481 44.909 1 48.83 ? O1P FMN 402 C 1 HETATM 30 O O2P FMN . . . K 3 -68.231 48.3 45.552 1 54.12 ? O2P FMN 402 C 1 HETATM 31 O O3P FMN . . . K 3 -68.282 46.002 46.811 1 43.04 ? O3P FMN 402 C 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #