data_7JW9
#
_model_server_result.job_id            Z8x6UXC-bBUl4buqIeixSQ 
_model_server_result.datetime_utc      '2024-11-01 17:29:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7jw9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":402}' 
#
_entry.id    7JW9 
#
_exptl.entry_id    7JW9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7JW9 
_cell.length_a            92.47 
_cell.length_b            92.47 
_cell.length_c            320.54 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7JW9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    'P 61' 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
? 3 K N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ALA 296 A ALA 273 1_555 G NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc2 A OD1 ASP 299 A ASP 276 1_555 G NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? 
metalc ? metalc3 G NA NA . A NA 403 1_455 C OG SER 147 C SER 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc4 G NA NA . A NA 403 1_555 P O HOH . C HOH 528 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 3.042 ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 91 n n 
N1 C10 FMN doub 92 n n 
C2 O2 FMN doub 93 n n 
C2 N3 FMN sing 94 n n 
N3 C4 FMN sing 95 n n 
N3 HN3 FMN sing 96 n n 
C4 O4 FMN doub 97 n n 
C4 C4A FMN sing 98 n n 
C4A N5 FMN doub 99 n n 
C4A C10 FMN sing 100 n n 
N5 C5A FMN sing 101 n n 
C5A C6 FMN doub 102 n y 
C5A C9A FMN sing 103 n y 
C6 C7 FMN sing 104 n y 
C6 H6 FMN sing 105 n n 
C7 C7M FMN sing 106 n n 
C7 C8 FMN doub 107 n y 
C7M HM71 FMN sing 108 n n 
C7M HM72 FMN sing 109 n n 
C7M HM73 FMN sing 110 n n 
C8 C8M FMN sing 111 n n 
C8 C9 FMN sing 112 n y 
C8M HM81 FMN sing 113 n n 
C8M HM82 FMN sing 114 n n 
C8M HM83 FMN sing 115 n n 
C9 C9A FMN doub 116 n y 
C9 H9 FMN sing 117 n n 
C9A N10 FMN sing 118 n n 
N10 C10 FMN sing 119 n n 
N10 C1' FMN sing 120 n n 
C1' C2' FMN sing 121 n n 
C1' "H1'1" FMN sing 122 n n 
C1' "H1'2" FMN sing 123 n n 
C2' O2' FMN sing 124 n n 
C2' C3' FMN sing 125 n n 
C2' H2' FMN sing 126 n n 
O2' HO2' FMN sing 127 n n 
C3' O3' FMN sing 128 n n 
C3' C4' FMN sing 129 n n 
C3' H3' FMN sing 130 n n 
O3' HO3' FMN sing 131 n n 
C4' O4' FMN sing 132 n n 
C4' C5' FMN sing 133 n n 
C4' H4' FMN sing 134 n n 
O4' HO4' FMN sing 135 n n 
C5' O5' FMN sing 136 n n 
C5' "H5'1" FMN sing 137 n n 
C5' "H5'2" FMN sing 138 n n 
O5' P FMN sing 139 n n 
P O1P FMN doub 140 n n 
P O2P FMN sing 141 n n 
P O3P FMN sing 142 n n 
O2P HOP2 FMN sing 143 n n 
O3P HOP3 FMN sing 144 n n 
#
_atom_sites.entry_id                     7JW9 
_atom_sites.fract_transf_matrix[1][1]    0.010814 
_atom_sites.fract_transf_matrix[1][2]    0.006244 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012487 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00312 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 03S A 1 401 401 03S 03S . 
F 3 FMN A 1 402 501 FMN FMN . 
G 4 NA A 1 403 1 NA NA . 
H 2 03S B 1 401 401 03S 03S . 
I 3 FMN B 1 402 501 FMN FMN . 
J 2 03S C 1 401 401 03S 03S . 
K 3 FMN C 1 402 501 FMN FMN . 
L 2 03S D 1 401 401 03S 03S . 
M 3 FMN D 1 402 501 FMN FMN . 
N 5 HOH A 1 501 5 HOH HOH . 
N 5 HOH A 2 502 118 HOH HOH . 
N 5 HOH A 3 503 101 HOH HOH . 
N 5 HOH A 4 504 13 HOH HOH . 
N 5 HOH A 5 505 1 HOH HOH . 
N 5 HOH A 6 506 38 HOH HOH . 
N 5 HOH A 7 507 114 HOH HOH . 
N 5 HOH A 8 508 47 HOH HOH . 
N 5 HOH A 9 509 138 HOH HOH . 
N 5 HOH A 10 510 66 HOH HOH . 
N 5 HOH A 11 511 15 HOH HOH . 
N 5 HOH A 12 512 46 HOH HOH . 
N 5 HOH A 13 513 23 HOH HOH . 
N 5 HOH A 14 514 21 HOH HOH . 
N 5 HOH A 15 515 87 HOH HOH . 
N 5 HOH A 16 516 104 HOH HOH . 
N 5 HOH A 17 517 12 HOH HOH . 
N 5 HOH A 18 518 83 HOH HOH . 
N 5 HOH A 19 519 37 HOH HOH . 
N 5 HOH A 20 520 14 HOH HOH . 
N 5 HOH A 21 521 86 HOH HOH . 
N 5 HOH A 22 522 25 HOH HOH . 
N 5 HOH A 23 523 130 HOH HOH . 
N 5 HOH A 24 524 108 HOH HOH . 
N 5 HOH A 25 525 96 HOH HOH . 
N 5 HOH A 26 526 94 HOH HOH . 
N 5 HOH A 27 527 79 HOH HOH . 
N 5 HOH A 28 528 107 HOH HOH . 
N 5 HOH A 29 529 43 HOH HOH . 
N 5 HOH A 30 530 120 HOH HOH . 
N 5 HOH A 31 531 65 HOH HOH . 
N 5 HOH A 32 532 88 HOH HOH . 
N 5 HOH A 33 533 103 HOH HOH . 
N 5 HOH A 34 534 124 HOH HOH . 
O 5 HOH B 1 501 29 HOH HOH . 
O 5 HOH B 2 502 97 HOH HOH . 
O 5 HOH B 3 503 16 HOH HOH . 
O 5 HOH B 4 504 8 HOH HOH . 
O 5 HOH B 5 505 19 HOH HOH . 
O 5 HOH B 6 506 77 HOH HOH . 
O 5 HOH B 7 507 57 HOH HOH . 
O 5 HOH B 8 508 51 HOH HOH . 
O 5 HOH B 9 509 39 HOH HOH . 
O 5 HOH B 10 510 53 HOH HOH . 
O 5 HOH B 11 511 58 HOH HOH . 
O 5 HOH B 12 512 133 HOH HOH . 
O 5 HOH B 13 513 18 HOH HOH . 
O 5 HOH B 14 514 50 HOH HOH . 
O 5 HOH B 15 515 98 HOH HOH . 
O 5 HOH B 16 516 100 HOH HOH . 
O 5 HOH B 17 517 35 HOH HOH . 
O 5 HOH B 18 518 17 HOH HOH . 
O 5 HOH B 19 519 105 HOH HOH . 
O 5 HOH B 20 520 64 HOH HOH . 
O 5 HOH B 21 521 137 HOH HOH . 
O 5 HOH B 22 522 126 HOH HOH . 
O 5 HOH B 23 523 9 HOH HOH . 
O 5 HOH B 24 524 24 HOH HOH . 
O 5 HOH B 25 525 113 HOH HOH . 
O 5 HOH B 26 526 44 HOH HOH . 
O 5 HOH B 27 527 136 HOH HOH . 
P 5 HOH C 1 501 3 HOH HOH . 
P 5 HOH C 2 502 40 HOH HOH . 
P 5 HOH C 3 503 106 HOH HOH . 
P 5 HOH C 4 504 110 HOH HOH . 
P 5 HOH C 5 505 75 HOH HOH . 
P 5 HOH C 6 506 90 HOH HOH . 
P 5 HOH C 7 507 49 HOH HOH . 
P 5 HOH C 8 508 128 HOH HOH . 
P 5 HOH C 9 509 42 HOH HOH . 
P 5 HOH C 10 510 4 HOH HOH . 
P 5 HOH C 11 511 84 HOH HOH . 
P 5 HOH C 12 512 7 HOH HOH . 
P 5 HOH C 13 513 56 HOH HOH . 
P 5 HOH C 14 514 76 HOH HOH . 
P 5 HOH C 15 515 68 HOH HOH . 
P 5 HOH C 16 516 85 HOH HOH . 
P 5 HOH C 17 517 81 HOH HOH . 
P 5 HOH C 18 518 26 HOH HOH . 
P 5 HOH C 19 519 74 HOH HOH . 
P 5 HOH C 20 520 63 HOH HOH . 
P 5 HOH C 21 521 129 HOH HOH . 
P 5 HOH C 22 522 123 HOH HOH . 
P 5 HOH C 23 523 116 HOH HOH . 
P 5 HOH C 24 524 99 HOH HOH . 
P 5 HOH C 25 525 60 HOH HOH . 
P 5 HOH C 26 526 48 HOH HOH . 
P 5 HOH C 27 527 89 HOH HOH . 
P 5 HOH C 28 528 62 HOH HOH . 
P 5 HOH C 29 529 33 HOH HOH . 
P 5 HOH C 30 530 54 HOH HOH . 
P 5 HOH C 31 531 20 HOH HOH . 
P 5 HOH C 32 532 109 HOH HOH . 
P 5 HOH C 33 533 34 HOH HOH . 
P 5 HOH C 34 534 95 HOH HOH . 
P 5 HOH C 35 535 70 HOH HOH . 
P 5 HOH C 36 536 69 HOH HOH . 
P 5 HOH C 37 537 134 HOH HOH . 
P 5 HOH C 38 538 119 HOH HOH . 
P 5 HOH C 39 539 132 HOH HOH . 
Q 5 HOH D 1 501 92 HOH HOH . 
Q 5 HOH D 2 502 127 HOH HOH . 
Q 5 HOH D 3 503 131 HOH HOH . 
Q 5 HOH D 4 504 2 HOH HOH . 
Q 5 HOH D 5 505 10 HOH HOH . 
Q 5 HOH D 6 506 6 HOH HOH . 
Q 5 HOH D 7 507 52 HOH HOH . 
Q 5 HOH D 8 508 82 HOH HOH . 
Q 5 HOH D 9 509 45 HOH HOH . 
Q 5 HOH D 10 510 31 HOH HOH . 
Q 5 HOH D 11 511 30 HOH HOH . 
Q 5 HOH D 12 512 22 HOH HOH . 
Q 5 HOH D 13 513 122 HOH HOH . 
Q 5 HOH D 14 514 111 HOH HOH . 
Q 5 HOH D 15 515 115 HOH HOH . 
Q 5 HOH D 16 516 72 HOH HOH . 
Q 5 HOH D 17 517 80 HOH HOH . 
Q 5 HOH D 18 518 11 HOH HOH . 
Q 5 HOH D 19 519 28 HOH HOH . 
Q 5 HOH D 20 520 27 HOH HOH . 
Q 5 HOH D 21 521 135 HOH HOH . 
Q 5 HOH D 22 522 32 HOH HOH . 
Q 5 HOH D 23 523 61 HOH HOH . 
Q 5 HOH D 24 524 67 HOH HOH . 
Q 5 HOH D 25 525 41 HOH HOH . 
Q 5 HOH D 26 526 59 HOH HOH . 
Q 5 HOH D 27 527 73 HOH HOH . 
Q 5 HOH D 28 528 36 HOH HOH . 
Q 5 HOH D 29 529 78 HOH HOH . 
Q 5 HOH D 30 530 55 HOH HOH . 
Q 5 HOH D 31 531 117 HOH HOH . 
Q 5 HOH D 32 532 91 HOH HOH . 
Q 5 HOH D 33 533 112 HOH HOH . 
Q 5 HOH D 34 534 71 HOH HOH . 
Q 5 HOH D 35 535 121 HOH HOH . 
Q 5 HOH D 36 536 93 HOH HOH . 
Q 5 HOH D 37 537 125 HOH HOH . 
Q 5 HOH D 38 538 102 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . M 3 -43.663 19.31 35.912 1 53.18 ? N1 FMN 402 D 1 
HETATM 2 C C2 FMN . . . M 3 -43.765 20.244 36.855 1 52.02 ? C2 FMN 402 D 1 
HETATM 3 O O2 FMN . . . M 3 -44.572 20.068 37.751 1 58.04 ? O2 FMN 402 D 1 
HETATM 4 N N3 FMN . . . M 3 -43.035 21.367 36.883 1 66.44 ? N3 FMN 402 D 1 
HETATM 5 C C4 FMN . . . M 3 -42.112 21.627 35.927 1 54.07 ? C4 FMN 402 D 1 
HETATM 6 O O4 FMN . . . M 3 -41.445 22.643 35.946 1 59.38 ? O4 FMN 402 D 1 
HETATM 7 C C4A FMN . . . M 3 -41.944 20.618 34.86 1 57.83 ? C4A FMN 402 D 1 
HETATM 8 N N5 FMN . . . M 3 -41.047 20.752 33.92 1 57.22 ? N5 FMN 402 D 1 
HETATM 9 C C5A FMN . . . M 3 -40.876 19.794 33.002 1 57.89 ? C5A FMN 402 D 1 
HETATM 10 C C6 FMN . . . M 3 -39.841 19.929 32.058 1 52.83 ? C6 FMN 402 D 1 
HETATM 11 C C7 FMN . . . M 3 -39.603 18.932 31.164 1 55.07 ? C7 FMN 402 D 1 
HETATM 12 C C7M FMN . . . M 3 -38.471 19.076 30.183 1 52.37 ? C7M FMN 402 D 1 
HETATM 13 C C8 FMN . . . M 3 -40.385 17.781 31.161 1 56.91 ? C8 FMN 402 D 1 
HETATM 14 C C8M FMN . . . M 3 -40.082 16.678 30.179 1 46.94 ? C8M FMN 402 D 1 
HETATM 15 C C9 FMN . . . M 3 -41.419 17.63 32.061 1 58.34 ? C9 FMN 402 D 1 
HETATM 16 C C9A FMN . . . M 3 -41.674 18.625 33.004 1 58.14 ? C9A FMN 402 D 1 
HETATM 17 N N10 FMN . . . M 3 -42.65 18.45 33.969 1 54.18 ? N10 FMN 402 D 1 
HETATM 18 C C10 FMN . . . M 3 -42.801 19.421 34.915 1 53.03 ? C10 FMN 402 D 1 
HETATM 19 C C1' FMN . . . M 3 -43.491 17.245 34.004 1 67.22 ? C1' FMN 402 D 1 
HETATM 20 C C2' FMN . . . M 3 -44.766 17.391 33.159 1 61.81 ? C2' FMN 402 D 1 
HETATM 21 O O2' FMN . . . M 3 -44.847 18.729 32.666 1 61.9 ? O2' FMN 402 D 1 
HETATM 22 C C3' FMN . . . M 3 -46.036 17.093 33.974 1 60.35 ? C3' FMN 402 D 1 
HETATM 23 O O3' FMN . . . M 3 -45.936 17.696 35.266 1 60.62 ? O3' FMN 402 D 1 
HETATM 24 C C4' FMN . . . M 3 -46.32 15.587 34.134 1 57.6 ? C4' FMN 402 D 1 
HETATM 25 O O4' FMN . . . M 3 -45.254 14.92 34.818 1 63.11 ? O4' FMN 402 D 1 
HETATM 26 C C5' FMN . . . M 3 -46.554 14.912 32.778 1 59.13 ? C5' FMN 402 D 1 
HETATM 27 O O5' FMN . . . M 3 -47.297 13.71 33.001 1 65.96 ? O5' FMN 402 D 1 
HETATM 28 P P FMN . . . M 3 -47.22 12.406 32.057 1 50.65 ? P FMN 402 D 1 
HETATM 29 O O1P FMN . . . M 3 -47.919 11.281 32.719 1 60.66 ? O1P FMN 402 D 1 
HETATM 30 O O2P FMN . . . M 3 -45.682 12.003 31.802 1 51.9 ? O2P FMN 402 D 1 
HETATM 31 O O3P FMN . . . M 3 -47.936 12.722 30.652 1 52.28 ? O3P FMN 402 D 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           196 
_model_server_stats.create_model_time_ms    70 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#