data_7JWE # _model_server_result.job_id nh0H4-30HJW5u1065QacGg _model_server_result.datetime_utc '2024-12-22 22:59:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jwe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 7JWE # _exptl.entry_id 7JWE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 615.726 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Gedatolisib _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.43 _cell.angle_gamma 90 _cell.entry_id 7JWE _cell.length_a 143.5 _cell.length_b 67.62 _cell.length_c 106.33 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JWE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C32 H41 N9 O4' _chem_comp.formula_weight 615.726 _chem_comp.id VL1 _chem_comp.mon_nstd_flag . _chem_comp.name Gedatolisib _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "N-{4-[4,6-bis(morpholin-4-yl)-1,3,5-triazin-2-yl]phenyl}-N'-{4-[4-(dimethylamino)piperidine-1-carbonyl]phenyl}urea" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 C10 VL1 doub 376 n n C03 N02 VL1 sing 377 n n C06 C05 VL1 sing 378 n n C06 N07 VL1 sing 379 n n C10 N07 VL1 sing 380 n n C10 C12 VL1 sing 381 n n C05 C04 VL1 sing 382 n n C04 N02 VL1 sing 383 n n C04 C09 VL1 sing 384 n n N07 C08 VL1 sing 385 n n C12 C17 VL1 doub 386 n y C12 C13 VL1 sing 387 n y N02 C01 VL1 sing 388 n n C17 C16 VL1 sing 389 n y C09 C08 VL1 sing 390 n n C13 C14 VL1 doub 391 n y C16 C15 VL1 doub 392 n y C14 C15 VL1 sing 393 n y O20 C19 VL1 doub 394 n n C15 N18 VL1 sing 395 n n C45 N40 VL1 sing 396 n n C45 C44 VL1 sing 397 n n N40 C41 VL1 sing 398 n n N40 C30 VL1 sing 399 n n C19 N18 VL1 sing 400 n n C19 N21 VL1 sing 401 n n C23 C24 VL1 doub 402 n y C23 C22 VL1 sing 403 n y C41 C42 VL1 sing 404 n n C24 C25 VL1 sing 405 n y N29 C30 VL1 doub 406 n y N29 C28 VL1 sing 407 n y C30 N31 VL1 sing 408 n y C42 O43 VL1 sing 409 n n C22 N21 VL1 sing 410 n n C22 C27 VL1 doub 411 n y C25 C28 VL1 sing 412 n n C25 C26 VL1 doub 413 n y C28 N33 VL1 doub 414 n y N31 C32 VL1 doub 415 n y C44 O43 VL1 sing 416 n n C27 C26 VL1 sing 417 n y N33 C32 VL1 sing 418 n y C32 N34 VL1 sing 419 n n N34 C39 VL1 sing 420 n n N34 C35 VL1 sing 421 n n C39 C38 VL1 sing 422 n n C35 C36 VL1 sing 423 n n C38 O37 VL1 sing 424 n n C36 O37 VL1 sing 425 n n C13 H131 VL1 sing 426 n n C17 H171 VL1 sing 427 n n C24 H241 VL1 sing 428 n n C26 H261 VL1 sing 429 n n C01 H012 VL1 sing 430 n n C01 H013 VL1 sing 431 n n C01 H011 VL1 sing 432 n n C03 H032 VL1 sing 433 n n C03 H033 VL1 sing 434 n n C03 H031 VL1 sing 435 n n C04 H041 VL1 sing 436 n n C05 H052 VL1 sing 437 n n C05 H051 VL1 sing 438 n n C06 H062 VL1 sing 439 n n C06 H061 VL1 sing 440 n n C08 H082 VL1 sing 441 n n C08 H081 VL1 sing 442 n n C09 H091 VL1 sing 443 n n C09 H092 VL1 sing 444 n n C14 H141 VL1 sing 445 n n C16 H161 VL1 sing 446 n n C23 H231 VL1 sing 447 n n C27 H271 VL1 sing 448 n n C35 H352 VL1 sing 449 n n C35 H351 VL1 sing 450 n n C36 H362 VL1 sing 451 n n C36 H361 VL1 sing 452 n n C38 H382 VL1 sing 453 n n C38 H381 VL1 sing 454 n n C39 H392 VL1 sing 455 n n C39 H391 VL1 sing 456 n n C41 H411 VL1 sing 457 n n C41 H412 VL1 sing 458 n n C42 H421 VL1 sing 459 n n C42 H422 VL1 sing 460 n n C44 H441 VL1 sing 461 n n C44 H442 VL1 sing 462 n n C45 H451 VL1 sing 463 n n C45 H452 VL1 sing 464 n n N18 H181 VL1 sing 465 n n N21 H211 VL1 sing 466 n n # _atom_sites.entry_id 7JWE _atom_sites.fract_transf_matrix[1][1] 0.006969 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000662 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009447 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VL1 A 1 1201 1101 VL1 LIG . C 3 HOH A 1 1301 2 HOH HOH . C 3 HOH A 2 1302 7 HOH HOH . C 3 HOH A 3 1303 3 HOH HOH . C 3 HOH A 4 1304 4 HOH HOH . C 3 HOH A 5 1305 8 HOH HOH . C 3 HOH A 6 1306 1 HOH HOH . C 3 HOH A 7 1307 5 HOH HOH . C 3 HOH A 8 1308 6 HOH HOH . C 3 HOH A 9 1309 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 VL1 . . . B 2 36.586 -3.755 17.548 1 81.16 ? C10 VL1 1201 A 1 HETATM 2 C C13 VL1 . . . B 2 35.105 -5.287 18.945 1 85.74 ? C13 VL1 1201 A 1 HETATM 3 C C15 VL1 . . . B 2 32.994 -4.524 19.886 1 78.85 ? C15 VL1 1201 A 1 HETATM 4 C C17 VL1 . . . B 2 34.332 -3.02 18.567 1 89.62 ? C17 VL1 1201 A 1 HETATM 5 C C22 VL1 . . . B 2 28.043 -4.267 21.367 1 60.09 ? C22 VL1 1201 A 1 HETATM 6 C C24 VL1 . . . B 2 26.485 -2.498 20.892 1 68.03 ? C24 VL1 1201 A 1 HETATM 7 C C26 VL1 . . . B 2 25.707 -4.519 22.005 1 62.96 ? C26 VL1 1201 A 1 HETATM 8 C C28 VL1 . . . B 2 24.007 -2.682 21.51 1 69.95 ? C28 VL1 1201 A 1 HETATM 9 C C01 VL1 . . . B 2 39.875 1.474 19.414 1 102.11 ? C01 VL1 1201 A 1 HETATM 10 C C03 VL1 . . . B 2 39.27 2.217 17.188 1 110.11 ? C03 VL1 1201 A 1 HETATM 11 C C04 VL1 . . . B 2 38.368 0.109 17.957 1 115.46 ? C04 VL1 1201 A 1 HETATM 12 C C05 VL1 . . . B 2 39.432 -0.743 17.718 1 113.77 ? C05 VL1 1201 A 1 HETATM 13 C C06 VL1 . . . B 2 39.025 -2.234 17.492 1 85.7 ? C06 VL1 1201 A 1 HETATM 14 C C08 VL1 . . . B 2 37.704 -1.814 19.311 1 92.45 ? C08 VL1 1201 A 1 HETATM 15 C C09 VL1 . . . B 2 37.456 -0.34 18.91 1 103.51 ? C09 VL1 1201 A 1 HETATM 16 C C12 VL1 . . . B 2 35.287 -4.028 18.38 1 83.2 ? C12 VL1 1201 A 1 HETATM 17 C C14 VL1 . . . B 2 33.948 -5.53 19.695 1 75.47 ? C14 VL1 1201 A 1 HETATM 18 C C16 VL1 . . . B 2 33.173 -3.264 19.319 1 72.69 ? C16 VL1 1201 A 1 HETATM 19 C C19 VL1 . . . B 2 30.501 -4.263 20.508 1 72.3 ? C19 VL1 1201 A 1 HETATM 20 C C23 VL1 . . . B 2 27.802 -2.997 20.849 1 63.68 ? C23 VL1 1201 A 1 HETATM 21 C C25 VL1 . . . B 2 25.451 -3.254 21.462 1 65.39 ? C25 VL1 1201 A 1 HETATM 22 C C27 VL1 . . . B 2 27.018 -5.02 21.965 1 66.42 ? C27 VL1 1201 A 1 HETATM 23 C C30 VL1 . . . B 2 22.477 -1.007 21.046 1 73.22 ? C30 VL1 1201 A 1 HETATM 24 C C32 VL1 . . . B 2 21.81 -2.915 22.168 1 65.49 ? C32 VL1 1201 A 1 HETATM 25 C C35 VL1 . . . B 2 20.954 -5.121 23.171 1 68.21 ? C35 VL1 1201 A 1 HETATM 26 C C36 VL1 . . . B 2 20.304 -5.446 24.514 1 64.7 ? C36 VL1 1201 A 1 HETATM 27 C C38 VL1 . . . B 2 18.794 -3.699 24.28 1 64.33 ? C38 VL1 1201 A 1 HETATM 28 C C39 VL1 . . . B 2 19.379 -3.323 22.917 1 66.7 ? C39 VL1 1201 A 1 HETATM 29 C C41 VL1 . . . B 2 22.98 1.472 20.864 1 66.27 ? C41 VL1 1201 A 1 HETATM 30 C C42 VL1 . . . B 2 22.252 2.779 21.202 1 78.96 ? C42 VL1 1201 A 1 HETATM 31 C C44 VL1 . . . B 2 20.358 1.467 21.67 1 79.33 ? C44 VL1 1201 A 1 HETATM 32 C C45 VL1 . . . B 2 20.763 0.754 20.388 1 78.64 ? C45 VL1 1201 A 1 HETATM 33 N N02 VL1 . . . B 2 38.815 1.488 18.381 1 109.69 ? N02 VL1 1201 A 1 HETATM 34 N N07 VL1 . . . B 2 37.613 -2.758 18.037 1 86.03 ? N07 VL1 1201 A 1 HETATM 35 N N18 VL1 . . . B 2 31.81 -4.895 20.68 1 70.14 ? N18 VL1 1201 A 1 HETATM 36 N N21 VL1 . . . B 2 29.417 -4.797 21.37 1 77.23 ? N21 VL1 1201 A 1 HETATM 37 N N29 VL1 . . . B 2 23.726 -1.483 20.983 1 75.01 ? N29 VL1 1201 A 1 HETATM 38 N N31 VL1 . . . B 2 21.517 -1.721 21.64 1 73.99 ? N31 VL1 1201 A 1 HETATM 39 N N33 VL1 . . . B 2 23.057 -3.391 22.111 1 66.4 ? N33 VL1 1201 A 1 HETATM 40 N N34 VL1 . . . B 2 20.783 -3.712 22.826 1 65.04 ? N34 VL1 1201 A 1 HETATM 41 N N40 VL1 . . . B 2 22.161 0.322 20.451 1 67.7 ? N40 VL1 1201 A 1 HETATM 42 O O11 VL1 . . . B 2 36.769 -4.347 16.539 1 105.3 ? O11 VL1 1201 A 1 HETATM 43 O O20 VL1 . . . B 2 30.33 -3.401 19.721 1 73.61 ? O20 VL1 1201 A 1 HETATM 44 O O37 VL1 . . . B 2 18.982 -5.038 24.59 1 68.92 ? O37 VL1 1201 A 1 HETATM 45 O O43 VL1 . . . B 2 21.003 2.687 21.813 1 80.14 ? O43 VL1 1201 A 1 HETATM 46 H H131 VL1 . . . B 2 35.741 -5.955 18.827 1 102.89 ? H131 VL1 1201 A 1 HETATM 47 H H171 VL1 . . . B 2 34.467 -2.182 18.189 1 107.54 ? H171 VL1 1201 A 1 HETATM 48 H H241 VL1 . . . B 2 26.3 -1.658 20.537 1 81.63 ? H241 VL1 1201 A 1 HETATM 49 H H261 VL1 . . . B 2 25.021 -5.018 22.386 1 75.55 ? H261 VL1 1201 A 1 HETATM 50 H H012 VL1 . . . B 2 40.007 2.373 19.753 1 122.54 ? H012 VL1 1201 A 1 HETATM 51 H H013 VL1 . . . B 2 40.702 1.15 19.024 1 122.54 ? H013 VL1 1201 A 1 HETATM 52 H H011 VL1 . . . B 2 39.61 0.889 20.141 1 122.54 ? H011 VL1 1201 A 1 HETATM 53 H H032 VL1 . . . B 2 38.595 2.153 16.494 1 132.14 ? H032 VL1 1201 A 1 HETATM 54 H H033 VL1 . . . B 2 40.1 1.831 16.87 1 132.14 ? H033 VL1 1201 A 1 HETATM 55 H H031 VL1 . . . B 2 39.413 3.15 17.415 1 132.14 ? H031 VL1 1201 A 1 HETATM 56 H H041 VL1 . . . B 2 37.937 0.231 17.096 1 138.55 ? H041 VL1 1201 A 1 HETATM 57 H H052 VL1 . . . B 2 39.901 -0.431 16.929 1 136.53 ? H052 VL1 1201 A 1 HETATM 58 H H051 VL1 . . . B 2 40.032 -0.702 18.48 1 136.53 ? H051 VL1 1201 A 1 HETATM 59 H H062 VL1 . . . B 2 39.71 -2.781 17.908 1 102.84 ? H062 VL1 1201 A 1 HETATM 60 H H061 VL1 . . . B 2 39.035 -2.389 16.535 1 102.84 ? H061 VL1 1201 A 1 HETATM 61 H H082 VL1 . . . B 2 38.585 -1.895 19.709 1 110.94 ? H082 VL1 1201 A 1 HETATM 62 H H081 VL1 . . . B 2 37.037 -2.087 19.961 1 110.94 ? H081 VL1 1201 A 1 HETATM 63 H H091 VL1 . . . B 2 36.559 -0.261 18.549 1 124.21 ? H091 VL1 1201 A 1 HETATM 64 H H092 VL1 . . . B 2 37.529 0.216 19.701 1 124.21 ? H092 VL1 1201 A 1 HETATM 65 H H141 VL1 . . . B 2 33.811 -6.369 20.07 1 90.56 ? H141 VL1 1201 A 1 HETATM 66 H H161 VL1 . . . B 2 32.535 -2.598 19.438 1 87.23 ? H161 VL1 1201 A 1 HETATM 67 H H231 VL1 . . . B 2 28.492 -2.491 20.485 1 76.41 ? H231 VL1 1201 A 1 HETATM 68 H H271 VL1 . . . B 2 27.209 -5.851 22.335 1 79.71 ? H271 VL1 1201 A 1 HETATM 69 H H352 VL1 . . . B 2 21.901 -5.324 23.22 1 81.85 ? H352 VL1 1201 A 1 HETATM 70 H H351 VL1 . . . B 2 20.547 -5.669 22.482 1 81.85 ? H351 VL1 1201 A 1 HETATM 71 H H362 VL1 . . . B 2 20.806 -5.003 25.217 1 77.64 ? H362 VL1 1201 A 1 HETATM 72 H H361 VL1 . . . B 2 20.341 -6.405 24.653 1 77.64 ? H361 VL1 1201 A 1 HETATM 73 H H382 VL1 . . . B 2 17.843 -3.511 24.275 1 77.19 ? H382 VL1 1201 A 1 HETATM 74 H H381 VL1 . . . B 2 19.222 -3.159 24.963 1 77.19 ? H381 VL1 1201 A 1 HETATM 75 H H392 VL1 . . . B 2 18.877 -3.773 22.22 1 80.04 ? H392 VL1 1201 A 1 HETATM 76 H H391 VL1 . . . B 2 19.305 -2.363 22.793 1 80.04 ? H391 VL1 1201 A 1 HETATM 77 H H411 VL1 . . . B 2 23.599 1.661 20.142 1 79.52 ? H411 VL1 1201 A 1 HETATM 78 H H412 VL1 . . . B 2 23.48 1.204 21.651 1 79.52 ? H412 VL1 1201 A 1 HETATM 79 H H421 VL1 . . . B 2 22.134 3.269 20.373 1 94.76 ? H421 VL1 1201 A 1 HETATM 80 H H422 VL1 . . . B 2 22.828 3.288 21.793 1 94.76 ? H422 VL1 1201 A 1 HETATM 81 H H441 VL1 . . . B 2 20.58 0.902 22.427 1 95.2 ? H441 VL1 1201 A 1 HETATM 82 H H442 VL1 . . . B 2 19.4 1.618 21.656 1 95.2 ? H442 VL1 1201 A 1 HETATM 83 H H451 VL1 . . . B 2 20.195 -0.022 20.261 1 94.37 ? H451 VL1 1201 A 1 HETATM 84 H H452 VL1 . . . B 2 20.649 1.358 19.637 1 94.37 ? H452 VL1 1201 A 1 HETATM 85 H H181 VL1 . . . B 2 31.892 -5.513 21.273 1 84.17 ? H181 VL1 1201 A 1 HETATM 86 H H211 VL1 . . . B 2 29.601 -5.45 21.899 1 92.67 ? H211 VL1 1201 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 86 #