data_7JWI # _model_server_result.job_id nYyIL9upT-J9WcpVO-NoKw _model_server_result.datetime_utc '2024-11-21 14:19:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jwi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 7JWI # _exptl.entry_id 7JWI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JWI _cell.length_a 91.668 _cell.length_b 140.997 _cell.length_c 217.649 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JWI _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 227 A CYS 203 1_555 A SG CYS 283 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 D SG CYS 23 D CYS 23 1_555 D SG CYS 90 D CYS 104 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 D SG CYS 23 D CYS 23 1_555 D SG CYS 90 D CYS 104 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 D SG CYS 136 D CYS 150 1_555 D SG CYS 186 D CYS 200 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 D SG CYS 136 D CYS 150 1_555 D SG CYS 186 D CYS 200 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 D SG CYS 161 D CYS 175 1_555 E SG CYS 170 E CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 E SG CYS 23 E CYS 23 1_555 E SG CYS 91 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 E SG CYS 144 E CYS 157 1_555 E SG CYS 209 E CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7JWI _atom_sites.fract_transf_matrix[1][1] 0.010909 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007092 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004595 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 EDO E 1 301 301 EDO EDO . G 7 HOH A 1 401 44 HOH HOH . G 7 HOH A 2 402 23 HOH HOH . G 7 HOH A 3 403 2 HOH HOH . G 7 HOH A 4 404 38 HOH HOH . G 7 HOH A 5 405 71 HOH HOH . G 7 HOH A 6 406 78 HOH HOH . G 7 HOH A 7 407 25 HOH HOH . G 7 HOH A 8 408 10 HOH HOH . G 7 HOH A 9 409 81 HOH HOH . G 7 HOH A 10 410 48 HOH HOH . G 7 HOH A 11 411 76 HOH HOH . G 7 HOH A 12 412 35 HOH HOH . G 7 HOH A 13 413 12 HOH HOH . G 7 HOH A 14 414 49 HOH HOH . G 7 HOH A 15 415 84 HOH HOH . G 7 HOH A 16 416 15 HOH HOH . G 7 HOH A 17 417 19 HOH HOH . G 7 HOH A 18 418 3 HOH HOH . G 7 HOH A 19 419 24 HOH HOH . G 7 HOH A 20 420 5 HOH HOH . G 7 HOH A 21 421 4 HOH HOH . G 7 HOH A 22 422 40 HOH HOH . G 7 HOH A 23 423 73 HOH HOH . G 7 HOH A 24 424 7 HOH HOH . G 7 HOH A 25 425 47 HOH HOH . G 7 HOH A 26 426 32 HOH HOH . G 7 HOH A 27 427 86 HOH HOH . G 7 HOH A 28 428 27 HOH HOH . G 7 HOH A 29 429 21 HOH HOH . G 7 HOH A 30 430 66 HOH HOH . G 7 HOH A 31 431 42 HOH HOH . G 7 HOH A 32 432 39 HOH HOH . H 7 HOH B 1 101 58 HOH HOH . H 7 HOH B 2 102 74 HOH HOH . H 7 HOH B 3 103 80 HOH HOH . H 7 HOH B 4 104 17 HOH HOH . H 7 HOH B 5 105 6 HOH HOH . H 7 HOH B 6 106 20 HOH HOH . H 7 HOH B 7 107 87 HOH HOH . H 7 HOH B 8 108 53 HOH HOH . H 7 HOH B 9 109 18 HOH HOH . H 7 HOH B 10 110 31 HOH HOH . H 7 HOH B 11 111 88 HOH HOH . H 7 HOH B 12 112 54 HOH HOH . H 7 HOH B 13 113 36 HOH HOH . H 7 HOH B 14 114 61 HOH HOH . I 7 HOH C 1 101 67 HOH HOH . J 7 HOH D 1 301 77 HOH HOH . J 7 HOH D 2 302 92 HOH HOH . J 7 HOH D 3 303 90 HOH HOH . J 7 HOH D 4 304 1 HOH HOH . J 7 HOH D 5 305 72 HOH HOH . J 7 HOH D 6 306 68 HOH HOH . J 7 HOH D 7 307 46 HOH HOH . J 7 HOH D 8 308 51 HOH HOH . J 7 HOH D 9 309 45 HOH HOH . J 7 HOH D 10 310 41 HOH HOH . J 7 HOH D 11 311 82 HOH HOH . J 7 HOH D 12 312 8 HOH HOH . J 7 HOH D 13 313 79 HOH HOH . J 7 HOH D 14 314 59 HOH HOH . J 7 HOH D 15 315 62 HOH HOH . J 7 HOH D 16 316 43 HOH HOH . J 7 HOH D 17 317 91 HOH HOH . J 7 HOH D 18 318 83 HOH HOH . J 7 HOH D 19 319 37 HOH HOH . J 7 HOH D 20 320 34 HOH HOH . J 7 HOH D 21 321 30 HOH HOH . K 7 HOH E 1 401 89 HOH HOH . K 7 HOH E 2 402 63 HOH HOH . K 7 HOH E 3 403 13 HOH HOH . K 7 HOH E 4 404 75 HOH HOH . K 7 HOH E 5 405 14 HOH HOH . K 7 HOH E 6 406 22 HOH HOH . K 7 HOH E 7 407 56 HOH HOH . K 7 HOH E 8 408 26 HOH HOH . K 7 HOH E 9 409 29 HOH HOH . K 7 HOH E 10 410 65 HOH HOH . K 7 HOH E 11 411 28 HOH HOH . K 7 HOH E 12 412 52 HOH HOH . K 7 HOH E 13 413 9 HOH HOH . K 7 HOH E 14 414 33 HOH HOH . K 7 HOH E 15 415 55 HOH HOH . K 7 HOH E 16 416 11 HOH HOH . K 7 HOH E 17 417 50 HOH HOH . K 7 HOH E 18 418 60 HOH HOH . K 7 HOH E 19 419 70 HOH HOH . K 7 HOH E 20 420 64 HOH HOH . K 7 HOH E 21 421 16 HOH HOH . K 7 HOH E 22 422 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 6 -29.226 -19.685 -37.165 1 45.21 ? C1 EDO 301 E 1 HETATM 2 O O1 EDO . . . F 6 -28.809 -20.014 -38.481 1 45.58 ? O1 EDO 301 E 1 HETATM 3 C C2 EDO . . . F 6 -30.766 -19.564 -37.129 1 44.69 ? C2 EDO 301 E 1 HETATM 4 O O2 EDO . . . F 6 -31.341 -20.825 -37.419 1 44.36 ? O2 EDO 301 E 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #