data_7JXA # _model_server_result.job_id 6JJjRjIdkPnaLD_36OodzQ _model_server_result.datetime_utc '2024-11-13 18:36:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jxa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":505}' # _entry.id 7JXA # _exptl.entry_id 7JXA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JXA _cell.length_a 167.782 _cell.length_b 187.278 _cell.length_c 90.54 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JXA _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 243 A GLN 243 1_555 F NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc2 A OG1 THR 245 A THR 245 1_555 F NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc3 B O SER 60 B SER 60 1_555 H NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.143 ? metalc ? metalc4 B OG SER 60 B SER 60 1_555 H NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? metalc ? metalc5 B OG1 THR 62 B THR 62 1_555 H NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc6 B O GLU 148 B GLU 148 1_555 H NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? metalc ? metalc7 B OE1 GLU 148 B GLU 148 1_555 H NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? metalc ? metalc8 C OG SER 60 C SER 60 1_555 M NA NA . C NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc9 C OG1 THR 62 C THR 62 1_555 M NA NA . C NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc10 C O GLU 148 C GLU 148 1_555 M NA NA . C NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? metalc ? metalc11 C OE1 GLU 148 C GLU 148 1_555 M NA NA . C NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7JXA _atom_sites.fract_transf_matrix[1][1] 0.00596 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00534 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011045 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 I3P A 1 501 401 I3P I3P . F 3 NA A 1 502 1 NA NA . G 2 I3P B 1 501 401 I3P I3P . H 3 NA B 1 502 3 NA NA . I 2 I3P C 1 501 401 I3P I3P . J 4 ETX C 1 502 501 ETX ETX . K 4 ETX C 1 503 601 ETX ETX . L 4 ETX C 1 504 701 ETX ETX . M 3 NA C 1 505 2 NA NA . N 2 I3P D 1 501 401 I3P I3P . O 5 HOH A 1 601 150 HOH HOH . O 5 HOH A 2 602 151 HOH HOH . O 5 HOH A 3 603 62 HOH HOH . O 5 HOH A 4 604 105 HOH HOH . O 5 HOH A 5 605 88 HOH HOH . O 5 HOH A 6 606 101 HOH HOH . O 5 HOH A 7 607 31 HOH HOH . O 5 HOH A 8 608 86 HOH HOH . O 5 HOH A 9 609 63 HOH HOH . O 5 HOH A 10 610 55 HOH HOH . O 5 HOH A 11 611 177 HOH HOH . O 5 HOH A 12 612 90 HOH HOH . O 5 HOH A 13 613 85 HOH HOH . O 5 HOH A 14 614 169 HOH HOH . O 5 HOH A 15 615 57 HOH HOH . O 5 HOH A 16 616 109 HOH HOH . O 5 HOH A 17 617 117 HOH HOH . O 5 HOH A 18 618 154 HOH HOH . O 5 HOH A 19 619 5 HOH HOH . O 5 HOH A 20 620 97 HOH HOH . O 5 HOH A 21 621 33 HOH HOH . O 5 HOH A 22 622 104 HOH HOH . O 5 HOH A 23 623 149 HOH HOH . O 5 HOH A 24 624 67 HOH HOH . O 5 HOH A 25 625 165 HOH HOH . O 5 HOH A 26 626 132 HOH HOH . O 5 HOH A 27 627 23 HOH HOH . O 5 HOH A 28 628 171 HOH HOH . O 5 HOH A 29 629 37 HOH HOH . O 5 HOH A 30 630 172 HOH HOH . O 5 HOH A 31 631 82 HOH HOH . O 5 HOH A 32 632 159 HOH HOH . O 5 HOH A 33 633 129 HOH HOH . O 5 HOH A 34 634 69 HOH HOH . O 5 HOH A 35 635 186 HOH HOH . O 5 HOH A 36 636 4 HOH HOH . O 5 HOH A 37 637 124 HOH HOH . O 5 HOH A 38 638 146 HOH HOH . O 5 HOH A 39 639 147 HOH HOH . O 5 HOH A 40 640 6 HOH HOH . O 5 HOH A 41 641 138 HOH HOH . O 5 HOH A 42 642 130 HOH HOH . O 5 HOH A 43 643 3 HOH HOH . O 5 HOH A 44 644 116 HOH HOH . O 5 HOH A 45 645 89 HOH HOH . O 5 HOH A 46 646 128 HOH HOH . O 5 HOH A 47 647 126 HOH HOH . O 5 HOH A 48 648 103 HOH HOH . O 5 HOH A 49 649 108 HOH HOH . O 5 HOH A 50 650 185 HOH HOH . O 5 HOH A 51 651 32 HOH HOH . O 5 HOH A 52 652 115 HOH HOH . O 5 HOH A 53 653 110 HOH HOH . O 5 HOH A 54 654 96 HOH HOH . O 5 HOH A 55 655 114 HOH HOH . O 5 HOH A 56 656 166 HOH HOH . O 5 HOH A 57 657 131 HOH HOH . O 5 HOH A 58 658 28 HOH HOH . O 5 HOH A 59 659 160 HOH HOH . O 5 HOH A 60 660 153 HOH HOH . O 5 HOH A 61 661 178 HOH HOH . O 5 HOH A 62 662 168 HOH HOH . O 5 HOH A 63 663 205 HOH HOH . O 5 HOH A 64 664 34 HOH HOH . O 5 HOH A 65 665 202 HOH HOH . O 5 HOH A 66 666 113 HOH HOH . O 5 HOH A 67 667 195 HOH HOH . O 5 HOH A 68 668 167 HOH HOH . O 5 HOH A 69 669 187 HOH HOH . O 5 HOH A 70 670 2 HOH HOH . O 5 HOH A 71 671 188 HOH HOH . O 5 HOH A 72 672 127 HOH HOH . O 5 HOH A 73 673 184 HOH HOH . O 5 HOH A 74 674 170 HOH HOH . O 5 HOH A 75 675 155 HOH HOH . P 5 HOH B 1 601 162 HOH HOH . P 5 HOH B 2 602 74 HOH HOH . P 5 HOH B 3 603 144 HOH HOH . P 5 HOH B 4 604 51 HOH HOH . P 5 HOH B 5 605 72 HOH HOH . P 5 HOH B 6 606 50 HOH HOH . P 5 HOH B 7 607 180 HOH HOH . P 5 HOH B 8 608 161 HOH HOH . P 5 HOH B 9 609 197 HOH HOH . P 5 HOH B 10 610 36 HOH HOH . P 5 HOH B 11 611 135 HOH HOH . P 5 HOH B 12 612 66 HOH HOH . P 5 HOH B 13 613 158 HOH HOH . P 5 HOH B 14 614 99 HOH HOH . P 5 HOH B 15 615 175 HOH HOH . P 5 HOH B 16 616 203 HOH HOH . P 5 HOH B 17 617 134 HOH HOH . P 5 HOH B 18 618 111 HOH HOH . P 5 HOH B 19 619 173 HOH HOH . P 5 HOH B 20 620 106 HOH HOH . P 5 HOH B 21 621 136 HOH HOH . P 5 HOH B 22 622 94 HOH HOH . P 5 HOH B 23 623 176 HOH HOH . P 5 HOH B 24 624 164 HOH HOH . P 5 HOH B 25 625 163 HOH HOH . P 5 HOH B 26 626 43 HOH HOH . P 5 HOH B 27 627 100 HOH HOH . P 5 HOH B 28 628 98 HOH HOH . P 5 HOH B 29 629 49 HOH HOH . P 5 HOH B 30 630 27 HOH HOH . P 5 HOH B 31 631 107 HOH HOH . Q 5 HOH C 1 601 91 HOH HOH . Q 5 HOH C 2 602 56 HOH HOH . Q 5 HOH C 3 603 182 HOH HOH . Q 5 HOH C 4 604 39 HOH HOH . Q 5 HOH C 5 605 204 HOH HOH . Q 5 HOH C 6 606 10 HOH HOH . Q 5 HOH C 7 607 196 HOH HOH . Q 5 HOH C 8 608 11 HOH HOH . Q 5 HOH C 9 609 58 HOH HOH . Q 5 HOH C 10 610 9 HOH HOH . Q 5 HOH C 11 611 41 HOH HOH . Q 5 HOH C 12 612 84 HOH HOH . Q 5 HOH C 13 613 137 HOH HOH . Q 5 HOH C 14 614 73 HOH HOH . Q 5 HOH C 15 615 61 HOH HOH . Q 5 HOH C 16 616 13 HOH HOH . Q 5 HOH C 17 617 209 HOH HOH . Q 5 HOH C 18 618 7 HOH HOH . Q 5 HOH C 19 619 191 HOH HOH . Q 5 HOH C 20 620 45 HOH HOH . Q 5 HOH C 21 621 192 HOH HOH . Q 5 HOH C 22 622 194 HOH HOH . Q 5 HOH C 23 623 125 HOH HOH . Q 5 HOH C 24 624 70 HOH HOH . Q 5 HOH C 25 625 81 HOH HOH . Q 5 HOH C 26 626 47 HOH HOH . Q 5 HOH C 27 627 19 HOH HOH . Q 5 HOH C 28 628 181 HOH HOH . Q 5 HOH C 29 629 208 HOH HOH . Q 5 HOH C 30 630 152 HOH HOH . Q 5 HOH C 31 631 14 HOH HOH . Q 5 HOH C 32 632 60 HOH HOH . Q 5 HOH C 33 633 92 HOH HOH . Q 5 HOH C 34 634 18 HOH HOH . Q 5 HOH C 35 635 145 HOH HOH . Q 5 HOH C 36 636 212 HOH HOH . Q 5 HOH C 37 637 53 HOH HOH . Q 5 HOH C 38 638 207 HOH HOH . Q 5 HOH C 39 639 52 HOH HOH . Q 5 HOH C 40 640 59 HOH HOH . Q 5 HOH C 41 641 12 HOH HOH . Q 5 HOH C 42 642 25 HOH HOH . Q 5 HOH C 43 643 8 HOH HOH . Q 5 HOH C 44 644 156 HOH HOH . Q 5 HOH C 45 645 210 HOH HOH . Q 5 HOH C 46 646 206 HOH HOH . Q 5 HOH C 47 647 1 HOH HOH . Q 5 HOH C 48 648 16 HOH HOH . Q 5 HOH C 49 649 193 HOH HOH . Q 5 HOH C 50 650 157 HOH HOH . Q 5 HOH C 51 651 20 HOH HOH . Q 5 HOH C 52 652 35 HOH HOH . Q 5 HOH C 53 653 46 HOH HOH . Q 5 HOH C 54 654 133 HOH HOH . Q 5 HOH C 55 655 44 HOH HOH . Q 5 HOH C 56 656 40 HOH HOH . R 5 HOH D 1 601 142 HOH HOH . R 5 HOH D 2 602 190 HOH HOH . R 5 HOH D 3 603 22 HOH HOH . R 5 HOH D 4 604 122 HOH HOH . R 5 HOH D 5 605 68 HOH HOH . R 5 HOH D 6 606 42 HOH HOH . R 5 HOH D 7 607 65 HOH HOH . R 5 HOH D 8 608 83 HOH HOH . R 5 HOH D 9 609 211 HOH HOH . R 5 HOH D 10 610 87 HOH HOH . R 5 HOH D 11 611 71 HOH HOH . R 5 HOH D 12 612 64 HOH HOH . R 5 HOH D 13 613 93 HOH HOH . R 5 HOH D 14 614 121 HOH HOH . R 5 HOH D 15 615 139 HOH HOH . R 5 HOH D 16 616 95 HOH HOH . R 5 HOH D 17 617 77 HOH HOH . R 5 HOH D 18 618 75 HOH HOH . R 5 HOH D 19 619 24 HOH HOH . R 5 HOH D 20 620 123 HOH HOH . R 5 HOH D 21 621 179 HOH HOH . R 5 HOH D 22 622 30 HOH HOH . R 5 HOH D 23 623 189 HOH HOH . R 5 HOH D 24 624 120 HOH HOH . R 5 HOH D 25 625 112 HOH HOH . R 5 HOH D 26 626 78 HOH HOH . R 5 HOH D 27 627 118 HOH HOH . R 5 HOH D 28 628 148 HOH HOH . R 5 HOH D 29 629 140 HOH HOH . R 5 HOH D 30 630 48 HOH HOH . R 5 HOH D 31 631 119 HOH HOH . R 5 HOH D 32 632 200 HOH HOH . R 5 HOH D 33 633 199 HOH HOH . R 5 HOH D 34 634 79 HOH HOH . R 5 HOH D 35 635 76 HOH HOH . R 5 HOH D 36 636 102 HOH HOH . R 5 HOH D 37 637 201 HOH HOH . R 5 HOH D 38 638 143 HOH HOH . R 5 HOH D 39 639 183 HOH HOH . R 5 HOH D 40 640 54 HOH HOH . R 5 HOH D 41 641 198 HOH HOH . R 5 HOH D 42 642 80 HOH HOH . R 5 HOH D 43 643 21 HOH HOH . R 5 HOH D 44 644 26 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 3 _atom_site.Cartn_x 49.632 _atom_site.Cartn_y -27.206 _atom_site.Cartn_z 17.559 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 63.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 505 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #