data_7JXK # _model_server_result.job_id v4_8AbWeGKvYOb6aauNRYw _model_server_result.datetime_utc '2024-11-23 11:57:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jxk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1101}' # _entry.id 7JXK # _exptl.entry_id 7JXK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 62.06 _cell.angle_beta 85.58 _cell.angle_gamma 73.33 _cell.entry_id 7JXK _cell.length_a 66.853 _cell.length_b 87.369 _cell.length_c 91.313 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JXK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,K 1 1 C,F,L,M,R,S 2 1 E,P,Q 3 1 D,N,O 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_565 x,y+1,z 1 0 0 0 1 0 0 0 1 25.062581 83.697128 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 106 A CYS 797 1_555 J C29 8BS . A 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? covale ? covale2 C SG CYS 106 C CYS 797 1_555 L C29 8BS . C 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 ? covale ? covale3 D SG CYS 106 F CYS 797 1_555 N C29 8BS . F 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale4 E SG CYS 106 E CYS 797 1_555 P C29 8BS . E 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.746 ? metalc ? metalc1 A OD1 ASN 151 D ASN 842 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc2 A OD2 ASP 164 D ASP 855 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc3 G O2G ANP . D ANP 1101 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc4 G O1B ANP . D ANP 1101 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc5 G O2A ANP . D ANP 1101 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc6 F OD1 ASN 151 B ASN 842 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc7 F OD2 ASP 164 B ASP 855 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc8 R O2G ANP . B ANP 1101 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc9 R O1B ANP . B ANP 1101 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc10 R O2A ANP . B ANP 1101 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 70 n n PG O2G ANP sing 71 n n PG O3G ANP sing 72 n n PG N3B ANP sing 73 n n O2G HOG2 ANP sing 74 n n O3G HOG3 ANP sing 75 n n PB O1B ANP doub 76 n n PB O2B ANP sing 77 n n PB N3B ANP sing 78 n n PB O3A ANP sing 79 n n O2B HOB2 ANP sing 80 n n N3B HNB1 ANP sing 81 n n PA O1A ANP doub 82 n n PA O2A ANP sing 83 n n PA O3A ANP sing 84 n n PA O5' ANP sing 85 n n O2A HOA2 ANP sing 86 n n O5' C5' ANP sing 87 n n C5' C4' ANP sing 88 n n C5' "H5'1" ANP sing 89 n n C5' "H5'2" ANP sing 90 n n C4' O4' ANP sing 91 n n C4' C3' ANP sing 92 n n C4' H4' ANP sing 93 n n O4' C1' ANP sing 94 n n C3' O3' ANP sing 95 n n C3' C2' ANP sing 96 n n C3' H3' ANP sing 97 n n O3' HO3' ANP sing 98 n n C2' O2' ANP sing 99 n n C2' C1' ANP sing 100 n n C2' H2' ANP sing 101 n n O2' HO2' ANP sing 102 n n C1' N9 ANP sing 103 n n C1' H1' ANP sing 104 n n N9 C8 ANP sing 105 n y N9 C4 ANP sing 106 n y C8 N7 ANP doub 107 n y C8 H8 ANP sing 108 n n N7 C5 ANP sing 109 n y C5 C6 ANP sing 110 n y C5 C4 ANP doub 111 n y C6 N6 ANP sing 112 n n C6 N1 ANP doub 113 n y N6 HN61 ANP sing 114 n n N6 HN62 ANP sing 115 n n N1 C2 ANP sing 116 n y C2 N3 ANP doub 117 n y C2 H2 ANP sing 118 n n N3 C4 ANP sing 119 n y # _atom_sites.entry_id 7JXK _atom_sites.fract_transf_matrix[1][1] 0.014958 _atom_sites.fract_transf_matrix[1][2] -0.004479 _atom_sites.fract_transf_matrix[1][3] 0.00106 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011948 _atom_sites.fract_transf_matrix[2][3] -0.006317 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ANP D 1 1101 1101 ANP ANP . H 3 MG D 1 1102 1152 MG MG . I 4 JBJ D 1 1103 1201 JBJ 125 . J 5 8BS A 1 1101 1101 8BS PF7 . K 4 JBJ A 1 1102 1201 JBJ 125 . L 5 8BS C 1 1101 1101 8BS PF7 . M 4 JBJ C 1 1102 1201 JBJ 125 . N 5 8BS F 1 1101 1101 8BS PF7 . O 4 JBJ F 1 1102 1201 JBJ 125 . P 5 8BS E 1 1101 1101 8BS PF7 . Q 4 JBJ E 1 1102 1201 JBJ 125 . R 2 ANP B 1 1101 1101 ANP ANP . S 3 MG B 1 1102 1152 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . G 2 13.519 45 -24.485 1 86.14 ? PG ANP 1101 D 1 HETATM 2 O O1G ANP . . . G 2 14.555 44.789 -23.427 1 75.18 ? O1G ANP 1101 D 1 HETATM 3 O O2G ANP . . . G 2 14.102 45.933 -25.614 1 79.46 ? O2G ANP 1101 D 1 HETATM 4 O O3G ANP . . . G 2 13.153 43.593 -25.105 1 69.33 ? O3G ANP 1101 D 1 HETATM 5 P PB ANP . . . G 2 11.597 47.081 -24.538 1 80.56 ? PB ANP 1101 D 1 HETATM 6 O O1B ANP . . . G 2 12.403 47.385 -25.757 1 73.21 ? O1B ANP 1101 D 1 HETATM 7 O O2B ANP . . . G 2 10.108 46.93 -24.968 1 64.67 ? O2B ANP 1101 D 1 HETATM 8 N N3B ANP . . . G 2 12.129 45.677 -23.784 1 74.54 ? N3B ANP 1101 D 1 HETATM 9 P PA ANP . . . G 2 13.048 49.101 -23.39 1 62.47 ? PA ANP 1101 D 1 HETATM 10 O O1A ANP . . . G 2 13.541 49.123 -21.994 1 62.89 ? O1A ANP 1101 D 1 HETATM 11 O O2A ANP . . . G 2 14.061 48.558 -24.404 1 56.5 ? O2A ANP 1101 D 1 HETATM 12 O O3A ANP . . . G 2 11.717 48.248 -23.517 1 74.22 ? O3A ANP 1101 D 1 HETATM 13 O O5' ANP . . . G 2 12.526 50.55 -23.753 1 69.01 ? O5' ANP 1101 D 1 HETATM 14 C C5' ANP . . . G 2 11.26 51.006 -23.22 1 63.34 ? C5' ANP 1101 D 1 HETATM 15 C C4' ANP . . . G 2 10.423 51.62 -24.317 1 51.87 ? C4' ANP 1101 D 1 HETATM 16 O O4' ANP . . . G 2 11.172 52.671 -24.968 1 44.37 ? O4' ANP 1101 D 1 HETATM 17 C C3' ANP . . . G 2 9.978 50.661 -25.423 1 51.03 ? C3' ANP 1101 D 1 HETATM 18 O O3' ANP . . . G 2 8.654 50.962 -25.854 1 46.65 ? O3' ANP 1101 D 1 HETATM 19 C C2' ANP . . . G 2 10.98 50.957 -26.541 1 51.42 ? C2' ANP 1101 D 1 HETATM 20 O O2' ANP . . . G 2 10.473 50.643 -27.832 1 47.45 ? O2' ANP 1101 D 1 HETATM 21 C C1' ANP . . . G 2 11.131 52.463 -26.364 1 52.59 ? C1' ANP 1101 D 1 HETATM 22 N N9 ANP . . . G 2 12.327 53.037 -26.975 1 61.16 ? N9 ANP 1101 D 1 HETATM 23 C C8 ANP . . . G 2 13.595 52.522 -26.987 1 63.57 ? C8 ANP 1101 D 1 HETATM 24 N N7 ANP . . . G 2 14.468 53.268 -27.621 1 53.11 ? N7 ANP 1101 D 1 HETATM 25 C C5 ANP . . . G 2 13.718 54.355 -28.058 1 46.77 ? C5 ANP 1101 D 1 HETATM 26 C C6 ANP . . . G 2 14.055 55.505 -28.792 1 50.54 ? C6 ANP 1101 D 1 HETATM 27 N N6 ANP . . . G 2 15.285 55.77 -29.238 1 49.36 ? N6 ANP 1101 D 1 HETATM 28 N N1 ANP . . . G 2 13.066 56.389 -29.057 1 53.17 ? N1 ANP 1101 D 1 HETATM 29 C C2 ANP . . . G 2 11.832 56.129 -28.614 1 48.89 ? C2 ANP 1101 D 1 HETATM 30 N N3 ANP . . . G 2 11.398 55.079 -27.914 1 41.23 ? N3 ANP 1101 D 1 HETATM 31 C C4 ANP . . . G 2 12.394 54.22 -27.664 1 44.51 ? C4 ANP 1101 D 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 417 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #