data_7JXK # _model_server_result.job_id TYgPycS0r_YvQJppbBXH3A _model_server_result.datetime_utc '2024-11-23 12:40:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jxk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1101}' # _entry.id 7JXK # _exptl.entry_id 7JXK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 417.441 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(3R,4R)-4-fluoro-1-{6-[(3-methoxy-1-methyl-1H-pyrazol-4-yl)amino]-9-methyl-9H-purin-2-yl}pyrrolidin-3-yl]propanamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 62.06 _cell.angle_beta 85.58 _cell.angle_gamma 73.33 _cell.entry_id 7JXK _cell.length_a 66.853 _cell.length_b 87.369 _cell.length_c 91.313 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JXK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,K 1 1 C,F,L,M,R,S 2 1 E,P,Q 3 1 D,N,O 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_565 x,y+1,z 1 0 0 0 1 0 0 0 1 25.062581 83.697128 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 L N N ? 5 N N N ? 5 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 106 A CYS 797 1_555 J C29 8BS . A 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? covale ? covale2 C SG CYS 106 C CYS 797 1_555 L C29 8BS . C 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 ? covale ? covale3 D SG CYS 106 F CYS 797 1_555 N C29 8BS . F 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale4 E SG CYS 106 E CYS 797 1_555 P C29 8BS . E 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.746 ? metalc ? metalc1 A OD1 ASN 151 D ASN 842 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc2 A OD2 ASP 164 D ASP 855 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc3 G O2G ANP . D ANP 1101 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc4 G O1B ANP . D ANP 1101 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc5 G O2A ANP . D ANP 1101 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc6 F OD1 ASN 151 B ASN 842 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc7 F OD2 ASP 164 B ASP 855 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc8 R O2G ANP . B ANP 1101 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc9 R O1B ANP . B ANP 1101 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc10 R O2A ANP . B ANP 1101 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? # _chem_comp.formula 'C18 H24 F N9 O2' _chem_comp.formula_weight 417.441 _chem_comp.id 8BS _chem_comp.mon_nstd_flag . _chem_comp.name N-[(3R,4R)-4-fluoro-1-{6-[(3-methoxy-1-methyl-1H-pyrazol-4-yl)amino]-9-methyl-9H-purin-2-yl}pyrrolidin-3-yl]propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 N12 8BS sing 1 n n C13 N12 8BS sing 2 n y C13 N14 8BS doub 3 n y N12 C10 8BS sing 4 n y N14 C9 8BS sing 5 n y C10 C9 8BS doub 6 n y C10 N11 8BS sing 7 n y C9 C8 8BS sing 8 n y C23 O22 8BS sing 9 n n O22 C21 8BS sing 10 n n N11 C6 8BS doub 11 n y C8 N16 8BS sing 12 n n C8 N7 8BS doub 13 n y N16 C17 8BS sing 14 n n C6 N7 8BS sing 15 n y C6 N4 8BS sing 16 n n F25 C2 8BS sing 17 n n C21 C17 8BS sing 18 n y C21 N20 8BS doub 19 n y C17 C18 8BS doub 20 n y C3 N4 8BS sing 21 n n C3 C2 8BS sing 22 n n N4 C5 8BS sing 23 n n N20 N19 8BS sing 24 n y C2 C1 8BS sing 25 n n C18 N19 8BS sing 26 n y C5 C1 8BS sing 27 n n N19 C24 8BS sing 28 n n C1 N26 8BS sing 29 n n N26 C27 8BS sing 30 n n C27 O30 8BS doub 31 n n C27 C28 8BS sing 32 n n C28 C29 8BS sing 33 n n C5 H1 8BS sing 34 n n C5 H2 8BS sing 35 n n C13 H3 8BS sing 36 n n C15 H4 8BS sing 37 n n C15 H5 8BS sing 38 n n C15 H6 8BS sing 39 n n C24 H7 8BS sing 40 n n C24 H8 8BS sing 41 n n C24 H9 8BS sing 42 n n C28 H10 8BS sing 43 n n C28 H11 8BS sing 44 n n C1 H12 8BS sing 45 n n C2 H13 8BS sing 46 n n C3 H14 8BS sing 47 n n C3 H15 8BS sing 48 n n N16 H16 8BS sing 49 n n C18 H17 8BS sing 50 n n C23 H18 8BS sing 51 n n C23 H19 8BS sing 52 n n C23 H20 8BS sing 53 n n N26 H21 8BS sing 54 n n C29 H22 8BS sing 55 n n C29 H23 8BS sing 56 n n C29 H24 8BS sing 57 n n # _atom_sites.entry_id 7JXK _atom_sites.fract_transf_matrix[1][1] 0.014958 _atom_sites.fract_transf_matrix[1][2] -0.004479 _atom_sites.fract_transf_matrix[1][3] 0.00106 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011948 _atom_sites.fract_transf_matrix[2][3] -0.006317 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ANP D 1 1101 1101 ANP ANP . H 3 MG D 1 1102 1152 MG MG . I 4 JBJ D 1 1103 1201 JBJ 125 . J 5 8BS A 1 1101 1101 8BS PF7 . K 4 JBJ A 1 1102 1201 JBJ 125 . L 5 8BS C 1 1101 1101 8BS PF7 . M 4 JBJ C 1 1102 1201 JBJ 125 . N 5 8BS F 1 1101 1101 8BS PF7 . O 4 JBJ F 1 1102 1201 JBJ 125 . P 5 8BS E 1 1101 1101 8BS PF7 . Q 4 JBJ E 1 1102 1201 JBJ 125 . R 2 ANP B 1 1101 1101 ANP ANP . S 3 MG B 1 1102 1152 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 8BS . . . J 5 13.642 84.026 -38.035 1 71.45 ? C5 8BS 1101 A 1 HETATM 2 C C6 8BS . . . J 5 14.25 81.66 -38.913 1 70.2 ? C6 8BS 1101 A 1 HETATM 3 C C8 8BS . . . J 5 14.586 79.672 -37.639 1 66.75 ? C8 8BS 1101 A 1 HETATM 4 C C10 8BS . . . J 5 13.997 79.654 -39.993 1 65.83 ? C10 8BS 1101 A 1 HETATM 5 N N12 8BS . . . J 5 13.758 78.679 -40.99 1 63.57 ? N12 8BS 1101 A 1 HETATM 6 C C13 8BS . . . J 5 13.933 77.409 -40.349 1 60.22 ? C13 8BS 1101 A 1 HETATM 7 C C15 8BS . . . J 5 13.4 78.862 -42.409 1 64.61 ? C15 8BS 1101 A 1 HETATM 8 C C17 8BS . . . J 5 14.651 79.636 -35.175 1 74.27 ? C17 8BS 1101 A 1 HETATM 9 C C21 8BS . . . J 5 14.236 79.003 -33.955 1 78.21 ? C21 8BS 1101 A 1 HETATM 10 C C24 8BS . . . J 5 14.405 82.414 -32.678 1 87.55 ? C24 8BS 1101 A 1 HETATM 11 C C28 8BS . . . J 5 17.216 86.793 -37.997 1 81.94 ? C28 8BS 1101 A 1 HETATM 12 C C1 8BS . . . J 5 13.686 85.428 -38.699 1 72.58 ? C1 8BS 1101 A 1 HETATM 13 C C2 8BS . . . J 5 13.156 84.947 -40.008 1 71.9 ? C2 8BS 1101 A 1 HETATM 14 C C3 8BS . . . J 5 14.068 83.73 -40.354 1 72.11 ? C3 8BS 1101 A 1 HETATM 15 N N4 8BS . . . J 5 14.198 83.058 -39.037 1 71.57 ? N4 8BS 1101 A 1 HETATM 16 N N7 8BS . . . J 5 14.55 81.04 -37.723 1 70.73 ? N7 8BS 1101 A 1 HETATM 17 C C9 8BS . . . J 5 14.302 78.916 -38.803 1 62.43 ? C9 8BS 1101 A 1 HETATM 18 N N11 8BS . . . J 5 13.96 81.025 -40.086 1 66.47 ? N11 8BS 1101 A 1 HETATM 19 N N14 8BS . . . J 5 14.253 77.535 -39.044 1 59.66 ? N14 8BS 1101 A 1 HETATM 20 N N16 8BS . . . J 5 14.894 79.054 -36.438 1 68.48 ? N16 8BS 1101 A 1 HETATM 21 C C18 8BS . . . J 5 14.758 81.008 -34.813 1 78.6 ? C18 8BS 1101 A 1 HETATM 22 N N19 8BS . . . J 5 14.425 81.137 -33.478 1 82.57 ? N19 8BS 1101 A 1 HETATM 23 N N20 8BS . . . J 5 14.104 79.912 -32.929 1 81.98 ? N20 8BS 1101 A 1 HETATM 24 O O22 8BS . . . J 5 14.005 77.661 -33.817 1 75.69 ? O22 8BS 1101 A 1 HETATM 25 C C23 8BS . . . J 5 13.077 77.23 -32.835 1 76.15 ? C23 8BS 1101 A 1 HETATM 26 F F25 8BS . . . J 5 11.937 84.459 -39.717 1 70.03 ? F25 8BS 1101 A 1 HETATM 27 N N26 8BS . . . J 5 15.008 85.92 -38.791 1 73.19 ? N26 8BS 1101 A 1 HETATM 28 C C27 8BS . . . J 5 15.817 86.264 -37.745 1 76.29 ? C27 8BS 1101 A 1 HETATM 29 C C29 8BS . . . J 5 18.303 85.999 -37.373 1 79.77 ? C29 8BS 1101 A 1 HETATM 30 O O30 8BS . . . J 5 15.413 86.155 -36.584 1 81.56 ? O30 8BS 1101 A 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 382 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #