data_7JXK # _model_server_result.job_id e8VhmWstwXAPI5MRZVZPbQ _model_server_result.datetime_utc '2024-11-27 04:08:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jxk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":1101}' # _entry.id 7JXK # _exptl.entry_id 7JXK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 62.06 _cell.angle_beta 85.58 _cell.angle_gamma 73.33 _cell.entry_id 7JXK _cell.length_a 66.853 _cell.length_b 87.369 _cell.length_c 91.313 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JXK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,K 1 1 C,F,L,M,R,S 2 1 E,P,Q 3 1 D,N,O 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_565 x,y+1,z 1 0 0 0 1 0 0 0 1 25.062581 83.697128 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 106 A CYS 797 1_555 J C29 8BS . A 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? covale ? covale2 C SG CYS 106 C CYS 797 1_555 L C29 8BS . C 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 ? covale ? covale3 D SG CYS 106 F CYS 797 1_555 N C29 8BS . F 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale4 E SG CYS 106 E CYS 797 1_555 P C29 8BS . E 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.746 ? metalc ? metalc1 A OD1 ASN 151 D ASN 842 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc2 A OD2 ASP 164 D ASP 855 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc3 G O2G ANP . D ANP 1101 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc4 G O1B ANP . D ANP 1101 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc5 G O2A ANP . D ANP 1101 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc6 F OD1 ASN 151 B ASN 842 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc7 F OD2 ASP 164 B ASP 855 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc8 R O2G ANP . B ANP 1101 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc9 R O1B ANP . B ANP 1101 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc10 R O2A ANP . B ANP 1101 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 70 n n PG O2G ANP sing 71 n n PG O3G ANP sing 72 n n PG N3B ANP sing 73 n n O2G HOG2 ANP sing 74 n n O3G HOG3 ANP sing 75 n n PB O1B ANP doub 76 n n PB O2B ANP sing 77 n n PB N3B ANP sing 78 n n PB O3A ANP sing 79 n n O2B HOB2 ANP sing 80 n n N3B HNB1 ANP sing 81 n n PA O1A ANP doub 82 n n PA O2A ANP sing 83 n n PA O3A ANP sing 84 n n PA O5' ANP sing 85 n n O2A HOA2 ANP sing 86 n n O5' C5' ANP sing 87 n n C5' C4' ANP sing 88 n n C5' "H5'1" ANP sing 89 n n C5' "H5'2" ANP sing 90 n n C4' O4' ANP sing 91 n n C4' C3' ANP sing 92 n n C4' H4' ANP sing 93 n n O4' C1' ANP sing 94 n n C3' O3' ANP sing 95 n n C3' C2' ANP sing 96 n n C3' H3' ANP sing 97 n n O3' HO3' ANP sing 98 n n C2' O2' ANP sing 99 n n C2' C1' ANP sing 100 n n C2' H2' ANP sing 101 n n O2' HO2' ANP sing 102 n n C1' N9 ANP sing 103 n n C1' H1' ANP sing 104 n n N9 C8 ANP sing 105 n y N9 C4 ANP sing 106 n y C8 N7 ANP doub 107 n y C8 H8 ANP sing 108 n n N7 C5 ANP sing 109 n y C5 C6 ANP sing 110 n y C5 C4 ANP doub 111 n y C6 N6 ANP sing 112 n n C6 N1 ANP doub 113 n y N6 HN61 ANP sing 114 n n N6 HN62 ANP sing 115 n n N1 C2 ANP sing 116 n y C2 N3 ANP doub 117 n y C2 H2 ANP sing 118 n n N3 C4 ANP sing 119 n y # _atom_sites.entry_id 7JXK _atom_sites.fract_transf_matrix[1][1] 0.014958 _atom_sites.fract_transf_matrix[1][2] -0.004479 _atom_sites.fract_transf_matrix[1][3] 0.00106 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011948 _atom_sites.fract_transf_matrix[2][3] -0.006317 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ANP D 1 1101 1101 ANP ANP . H 3 MG D 1 1102 1152 MG MG . I 4 JBJ D 1 1103 1201 JBJ 125 . J 5 8BS A 1 1101 1101 8BS PF7 . K 4 JBJ A 1 1102 1201 JBJ 125 . L 5 8BS C 1 1101 1101 8BS PF7 . M 4 JBJ C 1 1102 1201 JBJ 125 . N 5 8BS F 1 1101 1101 8BS PF7 . O 4 JBJ F 1 1102 1201 JBJ 125 . P 5 8BS E 1 1101 1101 8BS PF7 . Q 4 JBJ E 1 1102 1201 JBJ 125 . R 2 ANP B 1 1101 1101 ANP ANP . S 3 MG B 1 1102 1152 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . R 2 32.331 75.681 -71.22 1 122.6 ? PG ANP 1101 B 1 HETATM 2 O O1G ANP . . . R 2 31.103 75.227 -71.947 1 107.19 ? O1G ANP 1101 B 1 HETATM 3 O O2G ANP . . . R 2 33.451 74.587 -71.379 1 93.1 ? O2G ANP 1101 B 1 HETATM 4 O O3G ANP . . . R 2 32.834 77.049 -71.836 1 87.69 ? O3G ANP 1101 B 1 HETATM 5 P PB ANP . . . R 2 32.816 74.939 -68.521 1 109.02 ? PB ANP 1101 B 1 HETATM 6 O O1B ANP . . . R 2 33.681 73.972 -69.261 1 87.37 ? O1B ANP 1101 B 1 HETATM 7 O O2B ANP . . . R 2 33.72 75.827 -67.618 1 95.43 ? O2B ANP 1101 B 1 HETATM 8 N N3B ANP . . . R 2 31.968 75.926 -69.584 1 110.88 ? N3B ANP 1101 B 1 HETATM 9 P PA ANP . . . R 2 30.889 72.995 -68.158 1 130.96 ? PA ANP 1101 B 1 HETATM 10 O O1A ANP . . . R 2 29.47 73.421 -68.197 1 89.46 ? O1A ANP 1101 B 1 HETATM 11 O O2A ANP . . . R 2 31.45 72.564 -69.518 1 92.3 ? O2A ANP 1101 B 1 HETATM 12 O O3A ANP . . . R 2 31.817 74.166 -67.604 1 102.44 ? O3A ANP 1101 B 1 HETATM 13 O O5' ANP . . . R 2 31.019 71.848 -67.064 1 87.37 ? O5' ANP 1101 B 1 HETATM 14 C C5' ANP . . . R 2 30.677 72.11 -65.677 1 81.93 ? C5' ANP 1101 B 1 HETATM 15 C C4' ANP . . . R 2 31.79 71.692 -64.744 1 65.68 ? C4' ANP 1101 B 1 HETATM 16 O O4' ANP . . . R 2 31.856 70.25 -64.677 1 67.21 ? O4' ANP 1101 B 1 HETATM 17 C C3' ANP . . . R 2 33.191 72.153 -65.132 1 67.23 ? C3' ANP 1101 B 1 HETATM 18 O O3' ANP . . . R 2 33.99 72.363 -63.974 1 75.87 ? O3' ANP 1101 B 1 HETATM 19 C C2' ANP . . . R 2 33.706 70.972 -65.955 1 68.68 ? C2' ANP 1101 B 1 HETATM 20 O O2' ANP . . . R 2 35.127 70.916 -65.956 1 86.74 ? O2' ANP 1101 B 1 HETATM 21 C C1' ANP . . . R 2 33.088 69.792 -65.203 1 64.28 ? C1' ANP 1101 B 1 HETATM 22 N N9 ANP . . . R 2 32.821 68.635 -66.046 1 61.05 ? N9 ANP 1101 B 1 HETATM 23 C C8 ANP . . . R 2 32.413 68.649 -67.357 1 73.68 ? C8 ANP 1101 B 1 HETATM 24 N N7 ANP . . . R 2 32.242 67.458 -67.875 1 77.4 ? N7 ANP 1101 B 1 HETATM 25 C C5 ANP . . . R 2 32.553 66.591 -66.836 1 64.12 ? C5 ANP 1101 B 1 HETATM 26 C C6 ANP . . . R 2 32.568 65.191 -66.74 1 53.25 ? C6 ANP 1101 B 1 HETATM 27 N N6 ANP . . . R 2 32.25 64.375 -67.748 1 49.21 ? N6 ANP 1101 B 1 HETATM 28 N N1 ANP . . . R 2 32.927 64.646 -65.555 1 52.5 ? N1 ANP 1101 B 1 HETATM 29 C C2 ANP . . . R 2 33.247 65.46 -64.543 1 54.53 ? C2 ANP 1101 B 1 HETATM 30 N N3 ANP . . . R 2 33.269 66.795 -64.515 1 56.01 ? N3 ANP 1101 B 1 HETATM 31 C C4 ANP . . . R 2 32.909 67.308 -65.704 1 62.12 ? C4 ANP 1101 B 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #