data_7JXK # _model_server_result.job_id aashcR3XTxsT9Rk3GU_npA _model_server_result.datetime_utc '2024-11-23 12:00:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jxk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1102}' # _entry.id 7JXK # _exptl.entry_id 7JXK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 543.612 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2-(5-fluoro-2-hydroxyphenyl)-2-{1-oxo-6-[4-(piperazin-1-yl)phenyl]-1,3-dihydro-2H-isoindol-2-yl}-N-(1,3-thiazol-2-yl)acetamide _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 62.06 _cell.angle_beta 85.58 _cell.angle_gamma 73.33 _cell.entry_id 7JXK _cell.length_a 66.853 _cell.length_b 87.369 _cell.length_c 91.313 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JXK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,K 1 1 C,F,L,M,R,S 2 1 E,P,Q 3 1 D,N,O 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_565 x,y+1,z 1 0 0 0 1 0 0 0 1 25.062581 83.697128 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 K N N ? 4 M N N ? 4 O N N ? 4 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 106 A CYS 797 1_555 J C29 8BS . A 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? covale ? covale2 C SG CYS 106 C CYS 797 1_555 L C29 8BS . C 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 ? covale ? covale3 D SG CYS 106 F CYS 797 1_555 N C29 8BS . F 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale4 E SG CYS 106 E CYS 797 1_555 P C29 8BS . E 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.746 ? metalc ? metalc1 A OD1 ASN 151 D ASN 842 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc2 A OD2 ASP 164 D ASP 855 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc3 G O2G ANP . D ANP 1101 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc4 G O1B ANP . D ANP 1101 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc5 G O2A ANP . D ANP 1101 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc6 F OD1 ASN 151 B ASN 842 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc7 F OD2 ASP 164 B ASP 855 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc8 R O2G ANP . B ANP 1101 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc9 R O1B ANP . B ANP 1101 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc10 R O2A ANP . B ANP 1101 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? # _chem_comp.formula 'C29 H26 F N5 O3 S' _chem_comp.formula_weight 543.612 _chem_comp.id JBJ _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2-(5-fluoro-2-hydroxyphenyl)-2-{1-oxo-6-[4-(piperazin-1-yl)phenyl]-1,3-dihydro-2H-isoindol-2-yl}-N-(1,3-thiazol-2-yl)acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C07 C06 JBJ doub 278 n y C07 S08 JBJ sing 279 n y C06 N05 JBJ sing 280 n y S08 C04 JBJ sing 281 n y N05 C04 JBJ doub 282 n y C04 N03 JBJ sing 283 n n N03 C02 JBJ sing 284 n n O01 C02 JBJ doub 285 n n C02 C09 JBJ sing 286 n n F35 C34 JBJ sing 287 n n C33 C34 JBJ doub 288 n y C33 C32 JBJ sing 289 n y C09 N10 JBJ sing 290 n n C09 C32 JBJ sing 291 n n O31 C11 JBJ doub 292 n n N10 C11 JBJ sing 293 n n N10 C30 JBJ sing 294 n n C34 C36 JBJ sing 295 n y C11 C12 JBJ sing 296 n n C32 C38 JBJ doub 297 n y C30 C29 JBJ sing 298 n n C12 C29 JBJ doub 299 n y C12 C13 JBJ sing 300 n y C29 C28 JBJ sing 301 n y C13 C14 JBJ doub 302 n y C28 C27 JBJ doub 303 n y C14 C27 JBJ sing 304 n y C14 C15 JBJ sing 305 n n C36 C37 JBJ doub 306 n y C38 C37 JBJ sing 307 n y C38 O39 JBJ sing 308 n n C15 C16 JBJ doub 309 n y C15 C26 JBJ sing 310 n y C16 C17 JBJ sing 311 n y C26 C25 JBJ doub 312 n y C17 C18 JBJ doub 313 n y C25 C18 JBJ sing 314 n y C24 N19 JBJ sing 315 n n C24 C23 JBJ sing 316 n n C18 N19 JBJ sing 317 n n C20 N19 JBJ sing 318 n n C20 C21 JBJ sing 319 n n N22 C23 JBJ sing 320 n n N22 C21 JBJ sing 321 n n C06 H1 JBJ sing 322 n n C07 H2 JBJ sing 323 n n C09 H3 JBJ sing 324 n n C13 H4 JBJ sing 325 n n C16 H5 JBJ sing 326 n n C17 H6 JBJ sing 327 n n C20 H7 JBJ sing 328 n n C20 H8 JBJ sing 329 n n C21 H9 JBJ sing 330 n n C21 H10 JBJ sing 331 n n C23 H11 JBJ sing 332 n n C23 H12 JBJ sing 333 n n C24 H13 JBJ sing 334 n n C24 H14 JBJ sing 335 n n C25 H15 JBJ sing 336 n n C26 H16 JBJ sing 337 n n C27 H17 JBJ sing 338 n n C28 H18 JBJ sing 339 n n C30 H19 JBJ sing 340 n n C30 H20 JBJ sing 341 n n C33 H21 JBJ sing 342 n n C36 H22 JBJ sing 343 n n C37 H23 JBJ sing 344 n n N03 H24 JBJ sing 345 n n N22 H25 JBJ sing 346 n n O39 H27 JBJ sing 347 n n # _atom_sites.entry_id 7JXK _atom_sites.fract_transf_matrix[1][1] 0.014958 _atom_sites.fract_transf_matrix[1][2] -0.004479 _atom_sites.fract_transf_matrix[1][3] 0.00106 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011948 _atom_sites.fract_transf_matrix[2][3] -0.006317 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ANP D 1 1101 1101 ANP ANP . H 3 MG D 1 1102 1152 MG MG . I 4 JBJ D 1 1103 1201 JBJ 125 . J 5 8BS A 1 1101 1101 8BS PF7 . K 4 JBJ A 1 1102 1201 JBJ 125 . L 5 8BS C 1 1101 1101 8BS PF7 . M 4 JBJ C 1 1102 1201 JBJ 125 . N 5 8BS F 1 1101 1101 8BS PF7 . O 4 JBJ F 1 1102 1201 JBJ 125 . P 5 8BS E 1 1101 1101 8BS PF7 . Q 4 JBJ E 1 1102 1201 JBJ 125 . R 2 ANP B 1 1101 1101 ANP ANP . S 3 MG B 1 1102 1152 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 JBJ . . . K 4 10.717 80.61 -47.806 1 60.01 ? C02 JBJ 1102 A 1 HETATM 2 C C04 JBJ . . . K 4 10.55 80.239 -45.257 1 58.26 ? C04 JBJ 1102 A 1 HETATM 3 C C06 JBJ . . . K 4 10.04 79.937 -43.017 1 58.14 ? C06 JBJ 1102 A 1 HETATM 4 C C07 JBJ . . . K 4 9.234 78.935 -43.472 1 58.92 ? C07 JBJ 1102 A 1 HETATM 5 C C09 JBJ . . . K 4 11.392 81.235 -49.141 1 60.7 ? C09 JBJ 1102 A 1 HETATM 6 C C11 JBJ . . . K 4 9.685 82.875 -50.392 1 66.39 ? C11 JBJ 1102 A 1 HETATM 7 C C12 JBJ . . . K 4 8.719 82.803 -51.595 1 69.83 ? C12 JBJ 1102 A 1 HETATM 8 C C13 JBJ . . . K 4 7.838 83.73 -52.216 1 73.52 ? C13 JBJ 1102 A 1 HETATM 9 C C14 JBJ . . . K 4 7.035 83.387 -53.333 1 76.8 ? C14 JBJ 1102 A 1 HETATM 10 C C15 JBJ . . . K 4 6.109 84.383 -54.022 1 81.31 ? C15 JBJ 1102 A 1 HETATM 11 C C16 JBJ . . . K 4 6.312 84.629 -55.399 1 83.85 ? C16 JBJ 1102 A 1 HETATM 12 C C17 JBJ . . . K 4 5.528 85.528 -56.138 1 88.49 ? C17 JBJ 1102 A 1 HETATM 13 C C18 JBJ . . . K 4 4.472 86.267 -55.532 1 90.95 ? C18 JBJ 1102 A 1 HETATM 14 C C20 JBJ . . . K 4 3.175 86.693 -57.702 1 100.21 ? C20 JBJ 1102 A 1 HETATM 15 C C21 JBJ . . . K 4 2.457 87.721 -58.615 1 106.26 ? C21 JBJ 1102 A 1 HETATM 16 C C23 JBJ . . . K 4 1.753 88.954 -56.629 1 111.11 ? C23 JBJ 1102 A 1 HETATM 17 C C24 JBJ . . . K 4 2.48 87.924 -55.714 1 101.56 ? C24 JBJ 1102 A 1 HETATM 18 C C25 JBJ . . . K 4 4.27 86.025 -54.154 1 88.38 ? C25 JBJ 1102 A 1 HETATM 19 C C26 JBJ . . . K 4 5.067 85.114 -53.415 1 83.68 ? C26 JBJ 1102 A 1 HETATM 20 C C27 JBJ . . . K 4 7.171 82.065 -53.819 1 77.56 ? C27 JBJ 1102 A 1 HETATM 21 C C28 JBJ . . . K 4 8.04 81.128 -53.217 1 72.42 ? C28 JBJ 1102 A 1 HETATM 22 C C29 JBJ . . . K 4 8.821 81.498 -52.098 1 69.29 ? C29 JBJ 1102 A 1 HETATM 23 C C30 JBJ . . . K 4 9.845 80.704 -51.242 1 65.53 ? C30 JBJ 1102 A 1 HETATM 24 C C32 JBJ . . . K 4 12.476 80.289 -49.713 1 59.19 ? C32 JBJ 1102 A 1 HETATM 25 C C33 JBJ . . . K 4 12.647 78.988 -49.183 1 57.73 ? C33 JBJ 1102 A 1 HETATM 26 C C34 JBJ . . . K 4 13.632 78.175 -49.718 1 56.85 ? C34 JBJ 1102 A 1 HETATM 27 C C36 JBJ . . . K 4 14.492 78.5 -50.736 1 57.29 ? C36 JBJ 1102 A 1 HETATM 28 C C37 JBJ . . . K 4 14.337 79.789 -51.273 1 58.65 ? C37 JBJ 1102 A 1 HETATM 29 C C38 JBJ . . . K 4 13.357 80.668 -50.776 1 59.56 ? C38 JBJ 1102 A 1 HETATM 30 F F35 JBJ . . . K 4 13.774 76.875 -49.16 1 55.77 ? F35 JBJ 1102 A 1 HETATM 31 N N03 JBJ . . . K 4 11.119 80.76 -46.447 1 58.43 ? N03 JBJ 1102 A 1 HETATM 32 N N05 JBJ . . . K 4 10.77 80.663 -44.008 1 57.72 ? N05 JBJ 1102 A 1 HETATM 33 N N10 JBJ . . . K 4 10.36 81.636 -50.175 1 63.88 ? N10 JBJ 1102 A 1 HETATM 34 N N19 JBJ . . . K 4 3.652 87.206 -56.356 1 96.41 ? N19 JBJ 1102 A 1 HETATM 35 N N22 JBJ . . . K 4 1.327 88.379 -57.929 1 109.16 ? N22 JBJ 1102 A 1 HETATM 36 O O01 JBJ . . . K 4 9.726 79.911 -48.029 1 61.39 ? O01 JBJ 1102 A 1 HETATM 37 O O31 JBJ . . . K 4 9.901 83.847 -49.668 1 66.04 ? O31 JBJ 1102 A 1 HETATM 38 O O39 JBJ . . . K 4 13.189 81.932 -51.287 1 61.26 ? O39 JBJ 1102 A 1 HETATM 39 S S08 JBJ . . . K 4 9.38 78.877 -45.204 1 59.3 ? S08 JBJ 1102 A 1 # _model_server_stats.io_time_ms 155 _model_server_stats.parse_time_ms 197 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 39 #