data_7JXK
#
_model_server_result.job_id            eMcjx6_DJWi43onMmxviqA 
_model_server_result.datetime_utc      '2024-11-23 11:52:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7jxk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1102}' 
#
_entry.id    7JXK 
#
_exptl.entry_id    7JXK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              543.612 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R)-2-(5-fluoro-2-hydroxyphenyl)-2-{1-oxo-6-[4-(piperazin-1-yl)phenyl]-1,3-dihydro-2H-isoindol-2-yl}-N-(1,3-thiazol-2-yl)acetamide 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         62.06 
_cell.angle_beta          85.58 
_cell.angle_gamma         73.33 
_cell.entry_id            7JXK 
_cell.length_a            66.853 
_cell.length_b            87.369 
_cell.length_c            91.313 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7JXK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,J,K 1 1 
C,F,L,M,R,S 2 1 
E,P,Q 3 1 
D,N,O 3 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_565 x,y+1,z 1 0 0 0 1 0 0 0 1 25.062581 83.697128 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 K N N 
? 4 M N N 
? 4 O N N 
? 4 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B SG CYS 106 A CYS 797 1_555 J C29 8BS . A 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? 
covale ? covale2 C SG CYS 106 C CYS 797 1_555 L C29 8BS . C 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 ? 
covale ? covale3 D SG CYS 106 F CYS 797 1_555 N C29 8BS . F 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? 
covale ? covale4 E SG CYS 106 E CYS 797 1_555 P C29 8BS . E 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.746 ? 
metalc ? metalc1 A OD1 ASN 151 D ASN 842 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc2 A OD2 ASP 164 D ASP 855 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? 
metalc ? metalc3 G O2G ANP . D ANP 1101 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc4 G O1B ANP . D ANP 1101 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc5 G O2A ANP . D ANP 1101 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc6 F OD1 ASN 151 B ASN 842 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? 
metalc ? metalc7 F OD2 ASP 164 B ASP 855 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? 
metalc ? metalc8 R O2G ANP . B ANP 1101 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc9 R O1B ANP . B ANP 1101 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc10 R O2A ANP . B ANP 1101 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
#
_chem_comp.formula           'C29 H26 F N5 O3 S' 
_chem_comp.formula_weight    543.612 
_chem_comp.id                JBJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R)-2-(5-fluoro-2-hydroxyphenyl)-2-{1-oxo-6-[4-(piperazin-1-yl)phenyl]-1,3-dihydro-2H-isoindol-2-yl}-N-(1,3-thiazol-2-yl)acetamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C07 C06 JBJ doub 278 n y 
C07 S08 JBJ sing 279 n y 
C06 N05 JBJ sing 280 n y 
S08 C04 JBJ sing 281 n y 
N05 C04 JBJ doub 282 n y 
C04 N03 JBJ sing 283 n n 
N03 C02 JBJ sing 284 n n 
O01 C02 JBJ doub 285 n n 
C02 C09 JBJ sing 286 n n 
F35 C34 JBJ sing 287 n n 
C33 C34 JBJ doub 288 n y 
C33 C32 JBJ sing 289 n y 
C09 N10 JBJ sing 290 n n 
C09 C32 JBJ sing 291 n n 
O31 C11 JBJ doub 292 n n 
N10 C11 JBJ sing 293 n n 
N10 C30 JBJ sing 294 n n 
C34 C36 JBJ sing 295 n y 
C11 C12 JBJ sing 296 n n 
C32 C38 JBJ doub 297 n y 
C30 C29 JBJ sing 298 n n 
C12 C29 JBJ doub 299 n y 
C12 C13 JBJ sing 300 n y 
C29 C28 JBJ sing 301 n y 
C13 C14 JBJ doub 302 n y 
C28 C27 JBJ doub 303 n y 
C14 C27 JBJ sing 304 n y 
C14 C15 JBJ sing 305 n n 
C36 C37 JBJ doub 306 n y 
C38 C37 JBJ sing 307 n y 
C38 O39 JBJ sing 308 n n 
C15 C16 JBJ doub 309 n y 
C15 C26 JBJ sing 310 n y 
C16 C17 JBJ sing 311 n y 
C26 C25 JBJ doub 312 n y 
C17 C18 JBJ doub 313 n y 
C25 C18 JBJ sing 314 n y 
C24 N19 JBJ sing 315 n n 
C24 C23 JBJ sing 316 n n 
C18 N19 JBJ sing 317 n n 
C20 N19 JBJ sing 318 n n 
C20 C21 JBJ sing 319 n n 
N22 C23 JBJ sing 320 n n 
N22 C21 JBJ sing 321 n n 
C06 H1 JBJ sing 322 n n 
C07 H2 JBJ sing 323 n n 
C09 H3 JBJ sing 324 n n 
C13 H4 JBJ sing 325 n n 
C16 H5 JBJ sing 326 n n 
C17 H6 JBJ sing 327 n n 
C20 H7 JBJ sing 328 n n 
C20 H8 JBJ sing 329 n n 
C21 H9 JBJ sing 330 n n 
C21 H10 JBJ sing 331 n n 
C23 H11 JBJ sing 332 n n 
C23 H12 JBJ sing 333 n n 
C24 H13 JBJ sing 334 n n 
C24 H14 JBJ sing 335 n n 
C25 H15 JBJ sing 336 n n 
C26 H16 JBJ sing 337 n n 
C27 H17 JBJ sing 338 n n 
C28 H18 JBJ sing 339 n n 
C30 H19 JBJ sing 340 n n 
C30 H20 JBJ sing 341 n n 
C33 H21 JBJ sing 342 n n 
C36 H22 JBJ sing 343 n n 
C37 H23 JBJ sing 344 n n 
N03 H24 JBJ sing 345 n n 
N22 H25 JBJ sing 346 n n 
O39 H27 JBJ sing 347 n n 
#
_atom_sites.entry_id                     7JXK 
_atom_sites.fract_transf_matrix[1][1]    0.014958 
_atom_sites.fract_transf_matrix[1][2]    -0.004479 
_atom_sites.fract_transf_matrix[1][3]    0.00106 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011948 
_atom_sites.fract_transf_matrix[2][3]    -0.006317 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012425 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 ANP D 1 1101 1101 ANP ANP . 
H 3 MG D 1 1102 1152 MG MG . 
I 4 JBJ D 1 1103 1201 JBJ 125 . 
J 5 8BS A 1 1101 1101 8BS PF7 . 
K 4 JBJ A 1 1102 1201 JBJ 125 . 
L 5 8BS C 1 1101 1101 8BS PF7 . 
M 4 JBJ C 1 1102 1201 JBJ 125 . 
N 5 8BS F 1 1101 1101 8BS PF7 . 
O 4 JBJ F 1 1102 1201 JBJ 125 . 
P 5 8BS E 1 1101 1101 8BS PF7 . 
Q 4 JBJ E 1 1102 1201 JBJ 125 . 
R 2 ANP B 1 1101 1101 ANP ANP . 
S 3 MG B 1 1102 1152 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C02 JBJ . . . M 4 40.724 37.66 -54.318 1 78.23 ? C02 JBJ 1102 C 1 
HETATM 2 C C04 JBJ . . . M 4 38.756 39.327 -54.129 1 68.61 ? C04 JBJ 1102 C 1 
HETATM 3 C C06 JBJ . . . M 4 37.13 40.942 -53.77 1 68.74 ? C06 JBJ 1102 C 1 
HETATM 4 C C07 JBJ . . . M 4 38.178 41.709 -53.363 1 72.08 ? C07 JBJ 1102 C 1 
HETATM 5 C C09 JBJ . . . M 4 41.305 36.2 -54.739 1 70.02 ? C09 JBJ 1102 C 1 
HETATM 6 C C11 JBJ . . . M 4 42.579 35.106 -52.68 1 76.1 ? C11 JBJ 1102 C 1 
HETATM 7 C C12 JBJ . . . M 4 44.03 34.745 -52.291 1 78.84 ? C12 JBJ 1102 C 1 
HETATM 8 C C13 JBJ . . . M 4 44.631 34.134 -51.155 1 84.34 ? C13 JBJ 1102 C 1 
HETATM 9 C C14 JBJ . . . M 4 46.033 33.926 -51.044 1 85.94 ? C14 JBJ 1102 C 1 
HETATM 10 C C15 JBJ . . . M 4 46.644 33.233 -49.828 1 90.36 ? C15 JBJ 1102 C 1 
HETATM 11 C C16 JBJ . . . M 4 46.252 33.532 -48.502 1 93.54 ? C16 JBJ 1102 C 1 
HETATM 12 C C17 JBJ . . . M 4 46.799 32.866 -47.384 1 98.69 ? C17 JBJ 1102 C 1 
HETATM 13 C C18 JBJ . . . M 4 47.767 31.832 -47.53 1 100.82 ? C18 JBJ 1102 C 1 
HETATM 14 C C20 JBJ . . . M 4 49.596 30.355 -46.644 1 109.12 ? C20 JBJ 1102 C 1 
HETATM 15 C C21 JBJ . . . M 4 49.589 28.822 -46.351 1 119.69 ? C21 JBJ 1102 C 1 
HETATM 16 C C23 JBJ . . . M 4 47.192 28.879 -45.84 1 118.23 ? C23 JBJ 1102 C 1 
HETATM 17 C C24 JBJ . . . M 4 47.501 30.35 -45.393 1 109.94 ? C24 JBJ 1102 C 1 
HETATM 18 C C25 JBJ . . . M 4 48.149 31.534 -48.852 1 97.5 ? C25 JBJ 1102 C 1 
HETATM 19 C C26 JBJ . . . M 4 47.598 32.205 -49.961 1 92.5 ? C26 JBJ 1102 C 1 
HETATM 20 C C27 JBJ . . . M 4 46.821 34.333 -52.152 1 83.62 ? C27 JBJ 1102 C 1 
HETATM 21 C C28 JBJ . . . M 4 46.238 34.94 -53.29 1 79.58 ? C28 JBJ 1102 C 1 
HETATM 22 C C29 JBJ . . . M 4 44.834 35.147 -53.363 1 77.16 ? C29 JBJ 1102 C 1 
HETATM 23 C C30 JBJ . . . M 4 43.919 35.776 -54.455 1 73.32 ? C30 JBJ 1102 C 1 
HETATM 24 C C32 JBJ . . . M 4 41.524 36.091 -56.26 1 67.56 ? C32 JBJ 1102 C 1 
HETATM 25 C C33 JBJ . . . M 4 41.608 37.248 -57.066 1 65.81 ? C33 JBJ 1102 C 1 
HETATM 26 C C34 JBJ . . . M 4 41.796 37.086 -58.426 1 64.26 ? C34 JBJ 1102 C 1 
HETATM 27 C C36 JBJ . . . M 4 41.909 35.9 -59.094 1 64.22 ? C36 JBJ 1102 C 1 
HETATM 28 C C37 JBJ . . . M 4 41.823 34.743 -58.312 1 65.74 ? C37 JBJ 1102 C 1 
HETATM 29 C C38 JBJ . . . M 4 41.634 34.828 -56.925 1 68.64 ? C38 JBJ 1102 C 1 
HETATM 30 F F35 JBJ . . . M 4 41.879 38.254 -59.231 1 76.59 ? F35 JBJ 1102 C 1 
HETATM 31 N N03 JBJ . . . M 4 39.377 38.108 -54.466 1 74.35 ? N03 JBJ 1102 C 1 
HETATM 32 N N05 JBJ . . . M 4 37.45 39.615 -54.198 1 68.2 ? N05 JBJ 1102 C 1 
HETATM 33 N N10 JBJ . . . M 4 42.507 35.721 -53.952 1 72.85 ? N10 JBJ 1102 C 1 
HETATM 34 N N19 JBJ . . . M 4 48.359 31.153 -46.352 1 106.76 ? N19 JBJ 1102 C 1 
HETATM 35 N N22 JBJ . . . M 4 48.297 28.131 -46.483 1 121.9 ? N22 JBJ 1102 C 1 
HETATM 36 O O01 JBJ . . . M 4 41.552 38.438 -53.829 1 75.46 ? O01 JBJ 1102 C 1 
HETATM 37 O O31 JBJ . . . M 4 41.557 34.919 -52.019 1 76.94 ? O31 JBJ 1102 C 1 
HETATM 38 O O39 JBJ . . . M 4 41.548 33.698 -56.134 1 72.35 ? O39 JBJ 1102 C 1 
HETATM 39 S S08 JBJ . . . M 4 39.631 40.76 -53.508 1 69.88 ? S08 JBJ 1102 C 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           227 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           39 
#