data_7JXK # _model_server_result.job_id EbU1kcbCI4wymmYcWFuBfw _model_server_result.datetime_utc '2024-11-23 12:54:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jxk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1102}' # _entry.id 7JXK # _exptl.entry_id 7JXK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 543.612 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2-(5-fluoro-2-hydroxyphenyl)-2-{1-oxo-6-[4-(piperazin-1-yl)phenyl]-1,3-dihydro-2H-isoindol-2-yl}-N-(1,3-thiazol-2-yl)acetamide _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 62.06 _cell.angle_beta 85.58 _cell.angle_gamma 73.33 _cell.entry_id 7JXK _cell.length_a 66.853 _cell.length_b 87.369 _cell.length_c 91.313 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JXK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,K 1 1 C,F,L,M,R,S 2 1 E,P,Q 3 1 D,N,O 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_565 x,y+1,z 1 0 0 0 1 0 0 0 1 25.062581 83.697128 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 K N N ? 4 M N N ? 4 O N N ? 4 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 106 A CYS 797 1_555 J C29 8BS . A 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? covale ? covale2 C SG CYS 106 C CYS 797 1_555 L C29 8BS . C 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 ? covale ? covale3 D SG CYS 106 F CYS 797 1_555 N C29 8BS . F 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale4 E SG CYS 106 E CYS 797 1_555 P C29 8BS . E 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.746 ? metalc ? metalc1 A OD1 ASN 151 D ASN 842 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc2 A OD2 ASP 164 D ASP 855 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc3 G O2G ANP . D ANP 1101 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc4 G O1B ANP . D ANP 1101 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc5 G O2A ANP . D ANP 1101 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc6 F OD1 ASN 151 B ASN 842 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc7 F OD2 ASP 164 B ASP 855 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc8 R O2G ANP . B ANP 1101 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc9 R O1B ANP . B ANP 1101 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc10 R O2A ANP . B ANP 1101 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? # _chem_comp.formula 'C29 H26 F N5 O3 S' _chem_comp.formula_weight 543.612 _chem_comp.id JBJ _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2-(5-fluoro-2-hydroxyphenyl)-2-{1-oxo-6-[4-(piperazin-1-yl)phenyl]-1,3-dihydro-2H-isoindol-2-yl}-N-(1,3-thiazol-2-yl)acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C07 C06 JBJ doub 278 n y C07 S08 JBJ sing 279 n y C06 N05 JBJ sing 280 n y S08 C04 JBJ sing 281 n y N05 C04 JBJ doub 282 n y C04 N03 JBJ sing 283 n n N03 C02 JBJ sing 284 n n O01 C02 JBJ doub 285 n n C02 C09 JBJ sing 286 n n F35 C34 JBJ sing 287 n n C33 C34 JBJ doub 288 n y C33 C32 JBJ sing 289 n y C09 N10 JBJ sing 290 n n C09 C32 JBJ sing 291 n n O31 C11 JBJ doub 292 n n N10 C11 JBJ sing 293 n n N10 C30 JBJ sing 294 n n C34 C36 JBJ sing 295 n y C11 C12 JBJ sing 296 n n C32 C38 JBJ doub 297 n y C30 C29 JBJ sing 298 n n C12 C29 JBJ doub 299 n y C12 C13 JBJ sing 300 n y C29 C28 JBJ sing 301 n y C13 C14 JBJ doub 302 n y C28 C27 JBJ doub 303 n y C14 C27 JBJ sing 304 n y C14 C15 JBJ sing 305 n n C36 C37 JBJ doub 306 n y C38 C37 JBJ sing 307 n y C38 O39 JBJ sing 308 n n C15 C16 JBJ doub 309 n y C15 C26 JBJ sing 310 n y C16 C17 JBJ sing 311 n y C26 C25 JBJ doub 312 n y C17 C18 JBJ doub 313 n y C25 C18 JBJ sing 314 n y C24 N19 JBJ sing 315 n n C24 C23 JBJ sing 316 n n C18 N19 JBJ sing 317 n n C20 N19 JBJ sing 318 n n C20 C21 JBJ sing 319 n n N22 C23 JBJ sing 320 n n N22 C21 JBJ sing 321 n n C06 H1 JBJ sing 322 n n C07 H2 JBJ sing 323 n n C09 H3 JBJ sing 324 n n C13 H4 JBJ sing 325 n n C16 H5 JBJ sing 326 n n C17 H6 JBJ sing 327 n n C20 H7 JBJ sing 328 n n C20 H8 JBJ sing 329 n n C21 H9 JBJ sing 330 n n C21 H10 JBJ sing 331 n n C23 H11 JBJ sing 332 n n C23 H12 JBJ sing 333 n n C24 H13 JBJ sing 334 n n C24 H14 JBJ sing 335 n n C25 H15 JBJ sing 336 n n C26 H16 JBJ sing 337 n n C27 H17 JBJ sing 338 n n C28 H18 JBJ sing 339 n n C30 H19 JBJ sing 340 n n C30 H20 JBJ sing 341 n n C33 H21 JBJ sing 342 n n C36 H22 JBJ sing 343 n n C37 H23 JBJ sing 344 n n N03 H24 JBJ sing 345 n n N22 H25 JBJ sing 346 n n O39 H27 JBJ sing 347 n n # _atom_sites.entry_id 7JXK _atom_sites.fract_transf_matrix[1][1] 0.014958 _atom_sites.fract_transf_matrix[1][2] -0.004479 _atom_sites.fract_transf_matrix[1][3] 0.00106 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011948 _atom_sites.fract_transf_matrix[2][3] -0.006317 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ANP D 1 1101 1101 ANP ANP . H 3 MG D 1 1102 1152 MG MG . I 4 JBJ D 1 1103 1201 JBJ 125 . J 5 8BS A 1 1101 1101 8BS PF7 . K 4 JBJ A 1 1102 1201 JBJ 125 . L 5 8BS C 1 1101 1101 8BS PF7 . M 4 JBJ C 1 1102 1201 JBJ 125 . N 5 8BS F 1 1101 1101 8BS PF7 . O 4 JBJ F 1 1102 1201 JBJ 125 . P 5 8BS E 1 1101 1101 8BS PF7 . Q 4 JBJ E 1 1102 1201 JBJ 125 . R 2 ANP B 1 1101 1101 ANP ANP . S 3 MG B 1 1102 1152 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 JBJ . . . O 4 33.93 12.899 -23.801 1 63.23 ? C02 JBJ 1102 F 1 HETATM 2 C C04 JBJ . . . O 4 33.9 12.843 -21.242 1 63.09 ? C04 JBJ 1102 F 1 HETATM 3 C C06 JBJ . . . O 4 33.461 13.085 -18.981 1 64.53 ? C06 JBJ 1102 F 1 HETATM 4 C C07 JBJ . . . O 4 32.495 12.151 -19.206 1 64.87 ? C07 JBJ 1102 F 1 HETATM 5 C C09 JBJ . . . O 4 34.673 13.093 -25.2 1 62.86 ? C09 JBJ 1102 F 1 HETATM 6 C C11 JBJ . . . O 4 33.312 14.589 -26.898 1 67.09 ? C11 JBJ 1102 F 1 HETATM 7 C C12 JBJ . . . O 4 32.42 14.437 -28.133 1 69.16 ? C12 JBJ 1102 F 1 HETATM 8 C C13 JBJ . . . O 4 31.759 15.365 -28.966 1 74.98 ? C13 JBJ 1102 F 1 HETATM 9 C C14 JBJ . . . O 4 30.959 14.99 -30.068 1 73.97 ? C14 JBJ 1102 F 1 HETATM 10 C C15 JBJ . . . O 4 30.314 16.086 -30.911 1 77.42 ? C15 JBJ 1102 F 1 HETATM 11 C C16 JBJ . . . O 4 30.217 15.971 -32.322 1 79.26 ? C16 JBJ 1102 F 1 HETATM 12 C C17 JBJ . . . O 4 29.652 16.991 -33.125 1 82.85 ? C17 JBJ 1102 F 1 HETATM 13 C C18 JBJ . . . O 4 29.178 18.21 -32.543 1 85.89 ? C18 JBJ 1102 F 1 HETATM 14 C C20 JBJ . . . O 4 27.846 18.837 -34.56 1 91.62 ? C20 JBJ 1102 F 1 HETATM 15 C C21 JBJ . . . O 4 26.485 19.49 -34.832 1 96.18 ? C21 JBJ 1102 F 1 HETATM 16 C C23 JBJ . . . O 4 26.276 19.961 -32.501 1 93.88 ? C23 JBJ 1102 F 1 HETATM 17 C C24 JBJ . . . O 4 27.774 20.345 -32.681 1 91.58 ? C24 JBJ 1102 F 1 HETATM 18 C C25 JBJ . . . O 4 29.301 18.315 -31.154 1 83.9 ? C25 JBJ 1102 F 1 HETATM 19 C C26 JBJ . . . O 4 29.859 17.3 -30.369 1 79.34 ? C26 JBJ 1102 F 1 HETATM 20 C C27 JBJ . . . O 4 30.86 13.601 -30.326 1 72.88 ? C27 JBJ 1102 F 1 HETATM 21 C C28 JBJ . . . O 4 31.519 12.647 -29.497 1 70.02 ? C28 JBJ 1102 F 1 HETATM 22 C C29 JBJ . . . O 4 32.308 13.068 -28.388 1 68.15 ? C29 JBJ 1102 F 1 HETATM 23 C C30 JBJ . . . O 4 33.14 12.297 -27.302 1 65.41 ? C30 JBJ 1102 F 1 HETATM 24 C C32 JBJ . . . O 4 35.684 11.937 -25.402 1 60.77 ? C32 JBJ 1102 F 1 HETATM 25 C C33 JBJ . . . O 4 35.566 10.755 -24.64 1 59.84 ? C33 JBJ 1102 F 1 HETATM 26 C C34 JBJ . . . O 4 36.493 9.745 -24.823 1 58.38 ? C34 JBJ 1102 F 1 HETATM 27 C C36 JBJ . . . O 4 37.559 9.761 -25.686 1 57.68 ? C36 JBJ 1102 F 1 HETATM 28 C C37 JBJ . . . O 4 37.696 10.936 -26.445 1 64.57 ? C37 JBJ 1102 F 1 HETATM 29 C C38 JBJ . . . O 4 36.789 12.005 -26.309 1 62.47 ? C38 JBJ 1102 F 1 HETATM 30 F F35 JBJ . . . O 4 36.331 8.57 -24.04 1 74.73 ? F35 JBJ 1102 F 1 HETATM 31 N N03 JBJ . . . O 4 34.492 13.008 -22.512 1 62.42 ? N03 JBJ 1102 F 1 HETATM 32 N N05 JBJ . . . O 4 34.244 13.469 -20.114 1 63.47 ? N05 JBJ 1102 F 1 HETATM 33 N N10 JBJ . . . O 4 33.75 13.349 -26.39 1 64.91 ? N10 JBJ 1102 F 1 HETATM 34 N N19 JBJ . . . O 4 28.592 19.281 -33.364 1 88.94 ? N19 JBJ 1102 F 1 HETATM 35 N N22 JBJ . . . O 4 25.654 19.31 -33.668 1 95.8 ? N22 JBJ 1102 F 1 HETATM 36 O O01 JBJ . . . O 4 32.739 12.604 -23.881 1 64.62 ? O01 JBJ 1102 F 1 HETATM 37 O O31 JBJ . . . O 4 33.655 15.641 -26.356 1 67.48 ? O31 JBJ 1102 F 1 HETATM 38 O O39 JBJ . . . O 4 36.913 13.165 -27.046 1 61.15 ? O39 JBJ 1102 F 1 HETATM 39 S S08 JBJ . . . O 4 32.533 11.719 -20.89 1 63.99 ? S08 JBJ 1102 F 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 39 #