data_7JXK # _model_server_result.job_id G5LsomQNIXeNxSJdTcT36Q _model_server_result.datetime_utc '2024-11-27 03:25:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jxk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":1102}' # _entry.id 7JXK # _exptl.entry_id 7JXK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 543.612 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2-(5-fluoro-2-hydroxyphenyl)-2-{1-oxo-6-[4-(piperazin-1-yl)phenyl]-1,3-dihydro-2H-isoindol-2-yl}-N-(1,3-thiazol-2-yl)acetamide _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 62.06 _cell.angle_beta 85.58 _cell.angle_gamma 73.33 _cell.entry_id 7JXK _cell.length_a 66.853 _cell.length_b 87.369 _cell.length_c 91.313 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JXK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,K 1 1 C,F,L,M,R,S 2 1 E,P,Q 3 1 D,N,O 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_565 x,y+1,z 1 0 0 0 1 0 0 0 1 25.062581 83.697128 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 K N N ? 4 M N N ? 4 O N N ? 4 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 106 A CYS 797 1_555 J C29 8BS . A 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? covale ? covale2 C SG CYS 106 C CYS 797 1_555 L C29 8BS . C 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 ? covale ? covale3 D SG CYS 106 F CYS 797 1_555 N C29 8BS . F 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale4 E SG CYS 106 E CYS 797 1_555 P C29 8BS . E 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.746 ? metalc ? metalc1 A OD1 ASN 151 D ASN 842 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc2 A OD2 ASP 164 D ASP 855 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc3 G O2G ANP . D ANP 1101 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc4 G O1B ANP . D ANP 1101 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc5 G O2A ANP . D ANP 1101 1_555 H MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc6 F OD1 ASN 151 B ASN 842 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc7 F OD2 ASP 164 B ASP 855 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc8 R O2G ANP . B ANP 1101 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc9 R O1B ANP . B ANP 1101 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc10 R O2A ANP . B ANP 1101 1_555 S MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? # _chem_comp.formula 'C29 H26 F N5 O3 S' _chem_comp.formula_weight 543.612 _chem_comp.id JBJ _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2-(5-fluoro-2-hydroxyphenyl)-2-{1-oxo-6-[4-(piperazin-1-yl)phenyl]-1,3-dihydro-2H-isoindol-2-yl}-N-(1,3-thiazol-2-yl)acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C07 C06 JBJ doub 278 n y C07 S08 JBJ sing 279 n y C06 N05 JBJ sing 280 n y S08 C04 JBJ sing 281 n y N05 C04 JBJ doub 282 n y C04 N03 JBJ sing 283 n n N03 C02 JBJ sing 284 n n O01 C02 JBJ doub 285 n n C02 C09 JBJ sing 286 n n F35 C34 JBJ sing 287 n n C33 C34 JBJ doub 288 n y C33 C32 JBJ sing 289 n y C09 N10 JBJ sing 290 n n C09 C32 JBJ sing 291 n n O31 C11 JBJ doub 292 n n N10 C11 JBJ sing 293 n n N10 C30 JBJ sing 294 n n C34 C36 JBJ sing 295 n y C11 C12 JBJ sing 296 n n C32 C38 JBJ doub 297 n y C30 C29 JBJ sing 298 n n C12 C29 JBJ doub 299 n y C12 C13 JBJ sing 300 n y C29 C28 JBJ sing 301 n y C13 C14 JBJ doub 302 n y C28 C27 JBJ doub 303 n y C14 C27 JBJ sing 304 n y C14 C15 JBJ sing 305 n n C36 C37 JBJ doub 306 n y C38 C37 JBJ sing 307 n y C38 O39 JBJ sing 308 n n C15 C16 JBJ doub 309 n y C15 C26 JBJ sing 310 n y C16 C17 JBJ sing 311 n y C26 C25 JBJ doub 312 n y C17 C18 JBJ doub 313 n y C25 C18 JBJ sing 314 n y C24 N19 JBJ sing 315 n n C24 C23 JBJ sing 316 n n C18 N19 JBJ sing 317 n n C20 N19 JBJ sing 318 n n C20 C21 JBJ sing 319 n n N22 C23 JBJ sing 320 n n N22 C21 JBJ sing 321 n n C06 H1 JBJ sing 322 n n C07 H2 JBJ sing 323 n n C09 H3 JBJ sing 324 n n C13 H4 JBJ sing 325 n n C16 H5 JBJ sing 326 n n C17 H6 JBJ sing 327 n n C20 H7 JBJ sing 328 n n C20 H8 JBJ sing 329 n n C21 H9 JBJ sing 330 n n C21 H10 JBJ sing 331 n n C23 H11 JBJ sing 332 n n C23 H12 JBJ sing 333 n n C24 H13 JBJ sing 334 n n C24 H14 JBJ sing 335 n n C25 H15 JBJ sing 336 n n C26 H16 JBJ sing 337 n n C27 H17 JBJ sing 338 n n C28 H18 JBJ sing 339 n n C30 H19 JBJ sing 340 n n C30 H20 JBJ sing 341 n n C33 H21 JBJ sing 342 n n C36 H22 JBJ sing 343 n n C37 H23 JBJ sing 344 n n N03 H24 JBJ sing 345 n n N22 H25 JBJ sing 346 n n O39 H27 JBJ sing 347 n n # _atom_sites.entry_id 7JXK _atom_sites.fract_transf_matrix[1][1] 0.014958 _atom_sites.fract_transf_matrix[1][2] -0.004479 _atom_sites.fract_transf_matrix[1][3] 0.00106 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011948 _atom_sites.fract_transf_matrix[2][3] -0.006317 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ANP D 1 1101 1101 ANP ANP . H 3 MG D 1 1102 1152 MG MG . I 4 JBJ D 1 1103 1201 JBJ 125 . J 5 8BS A 1 1101 1101 8BS PF7 . K 4 JBJ A 1 1102 1201 JBJ 125 . L 5 8BS C 1 1101 1101 8BS PF7 . M 4 JBJ C 1 1102 1201 JBJ 125 . N 5 8BS F 1 1101 1101 8BS PF7 . O 4 JBJ F 1 1102 1201 JBJ 125 . P 5 8BS E 1 1101 1101 8BS PF7 . Q 4 JBJ E 1 1102 1201 JBJ 125 . R 2 ANP B 1 1101 1101 ANP ANP . S 3 MG B 1 1102 1152 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 JBJ . . . Q 4 65.796 67.931 0.566 1 65.21 ? C02 JBJ 1102 E 1 HETATM 2 C C04 JBJ . . . Q 4 64.099 69.868 0.285 1 62.36 ? C04 JBJ 1102 E 1 HETATM 3 C C06 JBJ . . . Q 4 62.651 71.681 0.322 1 70.66 ? C06 JBJ 1102 E 1 HETATM 4 C C07 JBJ . . . Q 4 63.703 72.332 0.894 1 64.43 ? C07 JBJ 1102 E 1 HETATM 5 C C09 JBJ . . . Q 4 66.323 66.419 0.304 1 66.45 ? C09 JBJ 1102 E 1 HETATM 6 C C11 JBJ . . . Q 4 67.147 65.4 2.597 1 72.89 ? C11 JBJ 1102 E 1 HETATM 7 C C12 JBJ . . . Q 4 68.466 65.114 3.319 1 76.76 ? C12 JBJ 1102 E 1 HETATM 8 C C13 JBJ . . . Q 4 68.778 64.545 4.574 1 80.99 ? C13 JBJ 1102 E 1 HETATM 9 C C14 JBJ . . . Q 4 70.101 64.376 5.03 1 84.84 ? C14 JBJ 1102 E 1 HETATM 10 C C15 JBJ . . . Q 4 70.359 63.751 6.396 1 91.87 ? C15 JBJ 1102 E 1 HETATM 11 C C16 JBJ . . . Q 4 71.42 62.835 6.609 1 94.11 ? C16 JBJ 1102 E 1 HETATM 12 C C17 JBJ . . . Q 4 71.655 62.24 7.876 1 99.46 ? C17 JBJ 1102 E 1 HETATM 13 C C18 JBJ . . . Q 4 70.825 62.526 9.007 1 100.94 ? C18 JBJ 1102 E 1 HETATM 14 C C20 JBJ . . . Q 4 71.884 60.633 10.427 1 111.32 ? C20 JBJ 1102 E 1 HETATM 15 C C21 JBJ . . . Q 4 71.921 59.964 11.832 1 124.67 ? C21 JBJ 1102 E 1 HETATM 16 C C23 JBJ . . . Q 4 70.249 61.47 12.771 1 117.52 ? C23 JBJ 1102 E 1 HETATM 17 C C24 JBJ . . . Q 4 69.893 61.823 11.299 1 108.15 ? C24 JBJ 1102 E 1 HETATM 18 C C25 JBJ . . . Q 4 69.775 63.426 8.777 1 101.46 ? C25 JBJ 1102 E 1 HETATM 19 C C26 JBJ . . . Q 4 69.552 64.002 7.515 1 98.9 ? C26 JBJ 1102 E 1 HETATM 20 C C27 JBJ . . . Q 4 71.127 64.816 4.155 1 84.77 ? C27 JBJ 1102 E 1 HETATM 21 C C28 JBJ . . . Q 4 70.836 65.391 2.89 1 79.76 ? C28 JBJ 1102 E 1 HETATM 22 C C29 JBJ . . . Q 4 69.491 65.54 2.467 1 76.08 ? C29 JBJ 1102 E 1 HETATM 23 C C30 JBJ . . . Q 4 68.847 66.119 1.172 1 71.7 ? C30 JBJ 1102 E 1 HETATM 24 C C32 JBJ . . . Q 4 66.779 66.214 -1.159 1 64.77 ? C32 JBJ 1102 E 1 HETATM 25 C C33 JBJ . . . Q 4 66.837 67.304 -2.057 1 62.61 ? C33 JBJ 1102 E 1 HETATM 26 C C34 JBJ . . . Q 4 67.236 67.068 -3.361 1 61.66 ? C34 JBJ 1102 E 1 HETATM 27 C C36 JBJ . . . Q 4 67.591 65.855 -3.895 1 62.68 ? C36 JBJ 1102 E 1 HETATM 28 C C37 JBJ . . . Q 4 67.532 64.76 -3.016 1 64.75 ? C37 JBJ 1102 E 1 HETATM 29 C C38 JBJ . . . Q 4 67.133 64.929 -1.678 1 65.76 ? C38 JBJ 1102 E 1 HETATM 30 F F35 JBJ . . . Q 4 67.288 68.184 -4.241 1 59.91 ? F35 JBJ 1102 E 1 HETATM 31 N N03 JBJ . . . Q 4 64.612 68.562 0.079 1 62.98 ? N03 JBJ 1102 E 1 HETATM 32 N N05 JBJ . . . Q 4 62.871 70.305 -0.015 1 61.14 ? N05 JBJ 1102 E 1 HETATM 33 N N10 JBJ . . . Q 4 67.349 65.989 1.329 1 69.96 ? N10 JBJ 1102 E 1 HETATM 34 N N19 JBJ . . . Q 4 71.068 61.911 10.333 1 107.08 ? N19 JBJ 1102 E 1 HETATM 35 N N22 JBJ . . . Q 4 71.617 60.92 12.923 1 120.28 ? N22 JBJ 1102 E 1 HETATM 36 O O01 JBJ . . . Q 4 66.539 68.59 1.294 1 66.92 ? O01 JBJ 1102 E 1 HETATM 37 O O31 JBJ . . . Q 4 66.008 65.17 3.006 1 72.62 ? O31 JBJ 1102 E 1 HETATM 38 O O39 JBJ . . . Q 4 67.067 63.872 -0.792 1 68.19 ? O39 JBJ 1102 E 1 HETATM 39 S S08 JBJ . . . Q 4 65.024 71.22 1.022 1 63.88 ? S08 JBJ 1102 E 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 39 #