data_7JXW
#
_model_server_result.job_id            iC6hejLrMXVG1vGZp8Z_mg 
_model_server_result.datetime_utc      '2024-11-14 16:58:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7jxw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":1301}' 
#
_entry.id    7JXW 
#
_exptl.entry_id    7JXW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              499.607 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-(2-{[2-(dimethylamino)ethyl](methyl)amino}-4-methoxy-5-{[4-(1-methyl-1H-indol-3-yl)pyrimidin-2-yl]amino}phenyl)prop-2-enamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          118.57 
_cell.angle_gamma         90 
_cell.entry_id            7JXW 
_cell.length_a            170.248 
_cell.length_b            73.059 
_cell.length_c            119.068 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7JXW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
B,G,H,N 1 1 
A,E,F,M 1 2 
D,K,L,P 2 1 
C,I,J,O 2 3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_455 -x-1/2,y+1/2,-z -1 0 0 0 1 0 0 0 -1 -85.124 36.5295 0 
3 'crystal symmetry operation' 4_556 -x+1/2,y+1/2,-z+1 -1 0 0 0 1 0 0 0 -1 28.181863 36.5295 104.569506 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 106 D CYS 797 1_555 E C9 YY3 . D YY3 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? 
covale ? covale2 B SG CYS 106 A CYS 797 1_555 G C9 YY3 . A YY3 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? 
covale ? covale3 C SG CYS 106 C CYS 797 1_555 I C9 YY3 . C YY3 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 ? 
covale ? covale4 D SG CYS 106 B CYS 797 1_555 K C9 YY3 . B YY3 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? 
#
_chem_comp.formula           'C28 H33 N7 O2' 
_chem_comp.formula_weight    499.607 
_chem_comp.id                YY3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-(2-{[2-(dimethylamino)ethyl](methyl)amino}-4-methoxy-5-{[4-(1-methyl-1H-indol-3-yl)pyrimidin-2-yl]amino}phenyl)prop-2-enamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Osimertinib;AZD 9291' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C13 N2 YY3 sing 450 n n 
N2 C11 YY3 sing 451 n n 
N2 C12 YY3 sing 452 n n 
C10 C11 YY3 sing 453 n n 
C10 N1 YY3 sing 454 n n 
C28 N1 YY3 sing 455 n n 
N1 C2 YY3 sing 456 n n 
C14 O1 YY3 sing 457 n n 
C3 C2 YY3 doub 458 n y 
C3 C4 YY3 sing 459 n y 
C2 C1 YY3 sing 460 n y 
O1 C4 YY3 sing 461 n n 
C4 C5 YY3 doub 462 n y 
C1 N YY3 sing 463 n n 
C1 C6 YY3 doub 464 n y 
N C7 YY3 sing 465 n n 
C7 C8 YY3 sing 466 n n 
C7 O YY3 doub 467 n n 
C5 C6 YY3 sing 468 n y 
C5 N3 YY3 sing 469 n n 
C8 C9 YY3 doub 470 n n 
N3 C15 YY3 sing 471 n n 
C15 N5 YY3 doub 472 n y 
C15 N4 YY3 sing 473 n y 
C24 C25 YY3 doub 474 n y 
C24 C23 YY3 sing 475 n y 
N5 C18 YY3 sing 476 n y 
N4 C16 YY3 doub 477 n y 
C25 C26 YY3 sing 478 n y 
C23 C22 YY3 doub 479 n y 
C18 C19 YY3 sing 480 n n 
C18 C17 YY3 doub 481 n y 
C26 C19 YY3 sing 482 n y 
C26 C21 YY3 doub 483 n y 
C16 C17 YY3 sing 484 n y 
C19 C20 YY3 doub 485 n y 
C22 C21 YY3 sing 486 n y 
C21 N6 YY3 sing 487 n y 
C20 N6 YY3 sing 488 n y 
N6 C27 YY3 sing 489 n n 
C13 H1 YY3 sing 490 n n 
C13 H2 YY3 sing 491 n n 
C13 H3 YY3 sing 492 n n 
C12 H5 YY3 sing 493 n n 
C12 H6 YY3 sing 494 n n 
C12 H7 YY3 sing 495 n n 
C11 H8 YY3 sing 496 n n 
C11 H9 YY3 sing 497 n n 
C10 H10 YY3 sing 498 n n 
C10 H11 YY3 sing 499 n n 
C28 H12 YY3 sing 500 n n 
C28 H13 YY3 sing 501 n n 
C28 H14 YY3 sing 502 n n 
C3 H15 YY3 sing 503 n n 
C14 H16 YY3 sing 504 n n 
C14 H17 YY3 sing 505 n n 
C14 H18 YY3 sing 506 n n 
N H19 YY3 sing 507 n n 
C8 H20 YY3 sing 508 n n 
C9 H22 YY3 sing 509 n n 
C9 H23 YY3 sing 510 n n 
C6 H25 YY3 sing 511 n n 
N3 H26 YY3 sing 512 n n 
C16 H27 YY3 sing 513 n n 
C17 H28 YY3 sing 514 n n 
C25 H29 YY3 sing 515 n n 
C24 H30 YY3 sing 516 n n 
C23 H31 YY3 sing 517 n n 
C22 H32 YY3 sing 518 n n 
C27 H33 YY3 sing 519 n n 
C27 H34 YY3 sing 520 n n 
C27 H35 YY3 sing 521 n n 
C20 H36 YY3 sing 522 n n 
#
_atom_sites.entry_id                     7JXW 
_atom_sites.fract_transf_matrix[1][1]    0.005874 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003198 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013688 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009563 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 YY3 D 1 1301 1301 YY3 YY3 . 
F 3 VNS D 1 1302 1401 VNS J63 . 
G 2 YY3 A 1 1301 1301 YY3 YY3 . 
H 3 VNS A 1 1302 1401 VNS J63 . 
I 2 YY3 C 1 1301 1301 YY3 YY3 . 
J 3 VNS C 1 1302 1401 VNS J63 . 
K 2 YY3 B 1 1301 1301 YY3 YY3 . 
L 3 VNS B 1 1302 1401 VNS J63 . 
M 4 HOH D 1 1401 40 HOH HOH . 
M 4 HOH D 2 1402 39 HOH HOH . 
M 4 HOH D 3 1403 37 HOH HOH . 
M 4 HOH D 4 1404 14 HOH HOH . 
M 4 HOH D 5 1405 43 HOH HOH . 
M 4 HOH D 6 1406 52 HOH HOH . 
M 4 HOH D 7 1407 17 HOH HOH . 
M 4 HOH D 8 1408 65 HOH HOH . 
N 4 HOH A 1 1401 56 HOH HOH . 
N 4 HOH A 2 1402 9 HOH HOH . 
N 4 HOH A 3 1403 35 HOH HOH . 
N 4 HOH A 4 1404 1 HOH HOH . 
N 4 HOH A 5 1405 42 HOH HOH . 
N 4 HOH A 6 1406 24 HOH HOH . 
N 4 HOH A 7 1407 2 HOH HOH . 
N 4 HOH A 8 1408 31 HOH HOH . 
N 4 HOH A 9 1409 51 HOH HOH . 
N 4 HOH A 10 1410 48 HOH HOH . 
N 4 HOH A 11 1411 18 HOH HOH . 
N 4 HOH A 12 1412 62 HOH HOH . 
N 4 HOH A 13 1413 44 HOH HOH . 
N 4 HOH A 14 1414 47 HOH HOH . 
N 4 HOH A 15 1415 66 HOH HOH . 
N 4 HOH A 16 1416 63 HOH HOH . 
N 4 HOH A 17 1417 21 HOH HOH . 
N 4 HOH A 18 1418 71 HOH HOH . 
N 4 HOH A 19 1419 26 HOH HOH . 
N 4 HOH A 20 1420 10 HOH HOH . 
O 4 HOH C 1 1401 22 HOH HOH . 
O 4 HOH C 2 1402 27 HOH HOH . 
O 4 HOH C 3 1403 32 HOH HOH . 
O 4 HOH C 4 1404 5 HOH HOH . 
O 4 HOH C 5 1405 45 HOH HOH . 
O 4 HOH C 6 1406 4 HOH HOH . 
O 4 HOH C 7 1407 58 HOH HOH . 
O 4 HOH C 8 1408 67 HOH HOH . 
O 4 HOH C 9 1409 12 HOH HOH . 
O 4 HOH C 10 1410 36 HOH HOH . 
O 4 HOH C 11 1411 7 HOH HOH . 
O 4 HOH C 12 1412 33 HOH HOH . 
O 4 HOH C 13 1413 34 HOH HOH . 
P 4 HOH B 1 1401 19 HOH HOH . 
P 4 HOH B 2 1402 8 HOH HOH . 
P 4 HOH B 3 1403 41 HOH HOH . 
P 4 HOH B 4 1404 6 HOH HOH . 
P 4 HOH B 5 1405 54 HOH HOH . 
P 4 HOH B 6 1406 20 HOH HOH . 
P 4 HOH B 7 1407 3 HOH HOH . 
P 4 HOH B 8 1408 16 HOH HOH . 
P 4 HOH B 9 1409 38 HOH HOH . 
P 4 HOH B 10 1410 50 HOH HOH . 
P 4 HOH B 11 1411 69 HOH HOH . 
P 4 HOH B 12 1412 29 HOH HOH . 
P 4 HOH B 13 1413 46 HOH HOH . 
P 4 HOH B 14 1414 25 HOH HOH . 
P 4 HOH B 15 1415 11 HOH HOH . 
P 4 HOH B 16 1416 23 HOH HOH . 
P 4 HOH B 17 1417 55 HOH HOH . 
P 4 HOH B 18 1418 70 HOH HOH . 
P 4 HOH B 19 1419 53 HOH HOH . 
P 4 HOH B 20 1420 13 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 YY3 . . . K 2 2.292 55.547 41.816 1 61.39 ? C13 YY3 1301 B 1 
HETATM 2 N N2 YY3 . . . K 2 2.158 54.467 42.899 1 71.19 ? N2 YY3 1301 B 1 
HETATM 3 C C12 YY3 . . . K 2 3.565 54.279 43.57 1 50 ? C12 YY3 1301 B 1 
HETATM 4 C C11 YY3 . . . K 2 1.042 54.914 43.915 1 65.96 ? C11 YY3 1301 B 1 
HETATM 5 C C10 YY3 . . . K 2 -0.362 54.062 43.892 1 50.47 ? C10 YY3 1301 B 1 
HETATM 6 N N1 YY3 . . . K 2 -0.969 53.921 45.262 1 64.63 ? N1 YY3 1301 B 1 
HETATM 7 C C28 YY3 . . . K 2 -1.975 54.952 45.617 1 66.49 ? C28 YY3 1301 B 1 
HETATM 8 C C3 YY3 . . . K 2 0.698 52.929 46.9 1 45.61 ? C3 YY3 1301 B 1 
HETATM 9 C C4 YY3 . . . K 2 1.165 51.977 47.834 1 38.02 ? C4 YY3 1301 B 1 
HETATM 10 O O1 YY3 . . . K 2 2.424 52.127 48.448 1 46.04 ? O1 YY3 1301 B 1 
HETATM 11 C C14 YY3 . . . K 2 3.436 52.72 47.675 1 41.62 ? C14 YY3 1301 B 1 
HETATM 12 C C2 YY3 . . . K 2 -0.577 52.855 46.252 1 49.64 ? C2 YY3 1301 B 1 
HETATM 13 C C1 YY3 . . . K 2 -1.382 51.701 46.626 1 46.04 ? C1 YY3 1301 B 1 
HETATM 14 N N YY3 . . . K 2 -2.695 51.554 45.995 1 46.36 ? N YY3 1301 B 1 
HETATM 15 C C7 YY3 . . . K 2 -3.746 50.566 46.257 1 36.41 ? C7 YY3 1301 B 1 
HETATM 16 O O YY3 . . . K 2 -3.589 49.703 47.091 1 49.93 ? O YY3 1301 B 1 
HETATM 17 C C8 YY3 . . . K 2 -5.066 50.597 45.489 1 29 ? C8 YY3 1301 B 1 
HETATM 18 C C9 YY3 . . . K 2 -5.637 49.511 44.887 1 34.09 ? C9 YY3 1301 B 1 
HETATM 19 C C6 YY3 . . . K 2 -0.849 50.767 47.603 1 35.95 ? C6 YY3 1301 B 1 
HETATM 20 C C5 YY3 . . . K 2 0.439 50.891 48.219 1 37.77 ? C5 YY3 1301 B 1 
HETATM 21 N N3 YY3 . . . K 2 1.005 49.967 49.181 1 40.15 ? N3 YY3 1301 B 1 
HETATM 22 C C15 YY3 . . . K 2 0.34 49.204 50.122 1 33.92 ? C15 YY3 1301 B 1 
HETATM 23 N N5 YY3 . . . K 2 -1.007 49.256 50.239 1 27.3 ? N5 YY3 1301 B 1 
HETATM 24 N N4 YY3 . . . K 2 1.148 48.435 50.898 1 43.94 ? N4 YY3 1301 B 1 
HETATM 25 C C16 YY3 . . . K 2 0.564 47.669 51.817 1 41.24 ? C16 YY3 1301 B 1 
HETATM 26 C C17 YY3 . . . K 2 -0.836 47.659 52.034 1 35.53 ? C17 YY3 1301 B 1 
HETATM 27 C C18 YY3 . . . K 2 -1.575 48.476 51.17 1 33.67 ? C18 YY3 1301 B 1 
HETATM 28 C C19 YY3 . . . K 2 -3.001 48.544 51.316 1 45.57 ? C19 YY3 1301 B 1 
HETATM 29 C C26 YY3 . . . K 2 -3.896 49.549 50.77 1 42.47 ? C26 YY3 1301 B 1 
HETATM 30 C C25 YY3 . . . K 2 -3.637 50.735 50.047 1 41.12 ? C25 YY3 1301 B 1 
HETATM 31 C C24 YY3 . . . K 2 -4.683 51.561 49.656 1 50.25 ? C24 YY3 1301 B 1 
HETATM 32 C C23 YY3 . . . K 2 -6.016 51.196 49.985 1 66.07 ? C23 YY3 1301 B 1 
HETATM 33 C C22 YY3 . . . K 2 -6.301 50.018 50.699 1 59.06 ? C22 YY3 1301 B 1 
HETATM 34 C C21 YY3 . . . K 2 -5.233 49.195 51.092 1 42.47 ? C21 YY3 1301 B 1 
HETATM 35 N N6 YY3 . . . K 2 -5.156 47.974 51.811 1 52.36 ? N6 YY3 1301 B 1 
HETATM 36 C C27 YY3 . . . K 2 -6.288 47.175 52.364 1 32.33 ? C27 YY3 1301 B 1 
HETATM 37 C C20 YY3 . . . K 2 -3.831 47.584 51.909 1 44.76 ? C20 YY3 1301 B 1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           37 
#