data_7JXW
#
_model_server_result.job_id            I9UPCPsEpPlzwm-GYGaprQ 
_model_server_result.datetime_utc      '2024-11-14 16:53:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7jxw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1302}' 
#
_entry.id    7JXW 
#
_exptl.entry_id    7JXW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              556.65 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R)-2-(5-fluoro-2-hydroxyphenyl)-2-{6-[4-(1-methylpiperidin-4-yl)phenyl]-1-oxo-1,3-dihydro-2H-isoindol-2-yl}-N-(1,3-thiazol-2-yl)acetamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          118.57 
_cell.angle_gamma         90 
_cell.entry_id            7JXW 
_cell.length_a            170.248 
_cell.length_b            73.059 
_cell.length_c            119.068 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7JXW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
B,G,H,N 1 1 
A,E,F,M 1 2 
D,K,L,P 2 1 
C,I,J,O 2 3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_455 -x-1/2,y+1/2,-z -1 0 0 0 1 0 0 0 -1 -85.124 36.5295 0 
3 'crystal symmetry operation' 4_556 -x+1/2,y+1/2,-z+1 -1 0 0 0 1 0 0 0 -1 28.181863 36.5295 104.569506 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 106 D CYS 797 1_555 E C9 YY3 . D YY3 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? 
covale ? covale2 B SG CYS 106 A CYS 797 1_555 G C9 YY3 . A YY3 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? 
covale ? covale3 C SG CYS 106 C CYS 797 1_555 I C9 YY3 . C YY3 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 ? 
covale ? covale4 D SG CYS 106 B CYS 797 1_555 K C9 YY3 . B YY3 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? 
#
_chem_comp.formula           'C31 H29 F N4 O3 S' 
_chem_comp.formula_weight    556.65 
_chem_comp.id                VNS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R)-2-(5-fluoro-2-hydroxyphenyl)-2-{6-[4-(1-methylpiperidin-4-yl)phenyl]-1-oxo-1,3-dihydro-2H-isoindol-2-yl}-N-(1,3-thiazol-2-yl)acetamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C24 N22 VNS sing 376 n n 
C24 C25 VNS sing 377 n n 
N22 C23 VNS sing 378 n n 
N22 C21 VNS sing 379 n n 
C25 C19 VNS sing 380 n n 
C21 C20 VNS sing 381 n n 
C19 C20 VNS sing 382 n n 
C19 C18 VNS sing 383 n n 
C18 C26 VNS doub 384 n y 
C18 C17 VNS sing 385 n y 
C26 C27 VNS sing 386 n y 
C17 C16 VNS doub 387 n y 
C27 C15 VNS doub 388 n y 
C16 C15 VNS sing 389 n y 
C15 C14 VNS sing 390 n n 
C14 C13 VNS doub 391 n y 
C14 C28 VNS sing 392 n y 
C13 C12 VNS sing 393 n y 
C28 C29 VNS doub 394 n y 
O32 C11 VNS doub 395 n n 
C12 C11 VNS sing 396 n n 
C12 C30 VNS doub 397 n y 
C11 N10 VNS sing 398 n n 
C29 C30 VNS sing 399 n y 
O40 C39 VNS sing 400 n n 
C30 C31 VNS sing 401 n n 
N10 C31 VNS sing 402 n n 
N10 C09 VNS sing 403 n n 
C39 C38 VNS doub 404 n y 
C39 C33 VNS sing 405 n y 
C09 C33 VNS sing 406 n n 
C09 C02 VNS sing 407 n n 
C38 C37 VNS sing 408 n y 
C33 C34 VNS doub 409 n y 
C02 N03 VNS sing 410 n n 
C02 O01 VNS doub 411 n n 
N03 C04 VNS sing 412 n n 
C37 C35 VNS doub 413 n y 
C34 C35 VNS sing 414 n y 
C04 N05 VNS doub 415 n y 
C04 S08 VNS sing 416 n y 
C35 F36 VNS sing 417 n n 
N05 C06 VNS sing 418 n y 
S08 C07 VNS sing 419 n y 
C06 C07 VNS doub 420 n y 
C06 H1 VNS sing 421 n n 
C07 H2 VNS sing 422 n n 
C09 H3 VNS sing 423 n n 
C13 H4 VNS sing 424 n n 
C16 H5 VNS sing 425 n n 
C19 H6 VNS sing 426 n n 
C20 H7 VNS sing 427 n n 
C20 H8 VNS sing 428 n n 
C21 H9 VNS sing 429 n n 
C21 H10 VNS sing 430 n n 
C23 H11 VNS sing 431 n n 
C23 H12 VNS sing 432 n n 
C23 H13 VNS sing 433 n n 
C24 H14 VNS sing 434 n n 
C24 H15 VNS sing 435 n n 
C25 H16 VNS sing 436 n n 
C25 H17 VNS sing 437 n n 
C17 H18 VNS sing 438 n n 
C26 H19 VNS sing 439 n n 
C27 H20 VNS sing 440 n n 
C28 H21 VNS sing 441 n n 
C29 H22 VNS sing 442 n n 
C31 H23 VNS sing 443 n n 
C31 H24 VNS sing 444 n n 
C34 H25 VNS sing 445 n n 
C37 H26 VNS sing 446 n n 
C38 H27 VNS sing 447 n n 
N03 H28 VNS sing 448 n n 
O40 H30 VNS sing 449 n n 
#
_atom_sites.entry_id                     7JXW 
_atom_sites.fract_transf_matrix[1][1]    0.005874 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003198 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013688 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009563 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 YY3 D 1 1301 1301 YY3 YY3 . 
F 3 VNS D 1 1302 1401 VNS J63 . 
G 2 YY3 A 1 1301 1301 YY3 YY3 . 
H 3 VNS A 1 1302 1401 VNS J63 . 
I 2 YY3 C 1 1301 1301 YY3 YY3 . 
J 3 VNS C 1 1302 1401 VNS J63 . 
K 2 YY3 B 1 1301 1301 YY3 YY3 . 
L 3 VNS B 1 1302 1401 VNS J63 . 
M 4 HOH D 1 1401 40 HOH HOH . 
M 4 HOH D 2 1402 39 HOH HOH . 
M 4 HOH D 3 1403 37 HOH HOH . 
M 4 HOH D 4 1404 14 HOH HOH . 
M 4 HOH D 5 1405 43 HOH HOH . 
M 4 HOH D 6 1406 52 HOH HOH . 
M 4 HOH D 7 1407 17 HOH HOH . 
M 4 HOH D 8 1408 65 HOH HOH . 
N 4 HOH A 1 1401 56 HOH HOH . 
N 4 HOH A 2 1402 9 HOH HOH . 
N 4 HOH A 3 1403 35 HOH HOH . 
N 4 HOH A 4 1404 1 HOH HOH . 
N 4 HOH A 5 1405 42 HOH HOH . 
N 4 HOH A 6 1406 24 HOH HOH . 
N 4 HOH A 7 1407 2 HOH HOH . 
N 4 HOH A 8 1408 31 HOH HOH . 
N 4 HOH A 9 1409 51 HOH HOH . 
N 4 HOH A 10 1410 48 HOH HOH . 
N 4 HOH A 11 1411 18 HOH HOH . 
N 4 HOH A 12 1412 62 HOH HOH . 
N 4 HOH A 13 1413 44 HOH HOH . 
N 4 HOH A 14 1414 47 HOH HOH . 
N 4 HOH A 15 1415 66 HOH HOH . 
N 4 HOH A 16 1416 63 HOH HOH . 
N 4 HOH A 17 1417 21 HOH HOH . 
N 4 HOH A 18 1418 71 HOH HOH . 
N 4 HOH A 19 1419 26 HOH HOH . 
N 4 HOH A 20 1420 10 HOH HOH . 
O 4 HOH C 1 1401 22 HOH HOH . 
O 4 HOH C 2 1402 27 HOH HOH . 
O 4 HOH C 3 1403 32 HOH HOH . 
O 4 HOH C 4 1404 5 HOH HOH . 
O 4 HOH C 5 1405 45 HOH HOH . 
O 4 HOH C 6 1406 4 HOH HOH . 
O 4 HOH C 7 1407 58 HOH HOH . 
O 4 HOH C 8 1408 67 HOH HOH . 
O 4 HOH C 9 1409 12 HOH HOH . 
O 4 HOH C 10 1410 36 HOH HOH . 
O 4 HOH C 11 1411 7 HOH HOH . 
O 4 HOH C 12 1412 33 HOH HOH . 
O 4 HOH C 13 1413 34 HOH HOH . 
P 4 HOH B 1 1401 19 HOH HOH . 
P 4 HOH B 2 1402 8 HOH HOH . 
P 4 HOH B 3 1403 41 HOH HOH . 
P 4 HOH B 4 1404 6 HOH HOH . 
P 4 HOH B 5 1405 54 HOH HOH . 
P 4 HOH B 6 1406 20 HOH HOH . 
P 4 HOH B 7 1407 3 HOH HOH . 
P 4 HOH B 8 1408 16 HOH HOH . 
P 4 HOH B 9 1409 38 HOH HOH . 
P 4 HOH B 10 1410 50 HOH HOH . 
P 4 HOH B 11 1411 69 HOH HOH . 
P 4 HOH B 12 1412 29 HOH HOH . 
P 4 HOH B 13 1413 46 HOH HOH . 
P 4 HOH B 14 1414 25 HOH HOH . 
P 4 HOH B 15 1415 11 HOH HOH . 
P 4 HOH B 16 1416 23 HOH HOH . 
P 4 HOH B 17 1417 55 HOH HOH . 
P 4 HOH B 18 1418 70 HOH HOH . 
P 4 HOH B 19 1419 53 HOH HOH . 
P 4 HOH B 20 1420 13 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O01 VNS . . . H 3 -23.433 63.536 -5.869 1 40.19 ? O01 VNS 1302 A 1 
HETATM 2 C C02 VNS . . . H 3 -23.18 63.267 -4.815 1 29.36 ? C02 VNS 1302 A 1 
HETATM 3 C C04 VNS . . . H 3 -24.764 65.001 -3.725 1 41.91 ? C04 VNS 1302 A 1 
HETATM 4 C C06 VNS . . . H 3 -26.253 66.765 -3.249 1 42.69 ? C06 VNS 1302 A 1 
HETATM 5 C C07 VNS . . . H 3 -26.561 66.643 -4.614 1 53.07 ? C07 VNS 1302 A 1 
HETATM 6 C C09 VNS . . . H 3 -22.128 62.029 -4.59 1 37.56 ? C09 VNS 1302 A 1 
HETATM 7 C C11 VNS . . . H 3 -19.998 62.565 -6.106 1 47.18 ? C11 VNS 1302 A 1 
HETATM 8 C C12 VNS . . . H 3 -19.431 62.078 -7.457 1 50.78 ? C12 VNS 1302 A 1 
HETATM 9 C C13 VNS . . . H 3 -18.262 62.391 -8.235 1 66.51 ? C13 VNS 1302 A 1 
HETATM 10 C C14 VNS . . . H 3 -17.955 61.795 -9.502 1 66.52 ? C14 VNS 1302 A 1 
HETATM 11 C C16 VNS . . . H 3 -16.143 63.494 -10.425 1 65.33 ? C16 VNS 1302 A 1 
HETATM 12 C C18 VNS . . . H 3 -14.141 62.868 -11.793 1 70.71 ? C18 VNS 1302 A 1 
HETATM 13 C C19 VNS . . . H 3 -12.819 63.204 -12.602 1 81.83 ? C19 VNS 1302 A 1 
HETATM 14 C C20 VNS . . . H 3 -12.166 61.843 -12.485 1 80.56 ? C20 VNS 1302 A 1 
HETATM 15 C C21 VNS . . . H 3 -10.686 61.711 -12.003 1 78.16 ? C21 VNS 1302 A 1 
HETATM 16 C C23 VNS . . . H 3 -9.76 62.355 -9.884 1 71.08 ? C23 VNS 1302 A 1 
HETATM 17 C C24 VNS . . . H 3 -10.694 64.143 -11.129 1 75.6 ? C24 VNS 1302 A 1 
HETATM 18 C C25 VNS . . . H 3 -12.049 64.402 -11.95 1 69.43 ? C25 VNS 1302 A 1 
HETATM 19 C C15 VNS . . . H 3 -16.643 62.173 -10.3 1 76.14 ? C15 VNS 1302 A 1 
HETATM 20 C C17 VNS . . . H 3 -14.94 63.837 -11.123 1 70.21 ? C17 VNS 1302 A 1 
HETATM 21 C C26 VNS . . . H 3 -14.641 61.529 -11.67 1 74.74 ? C26 VNS 1302 A 1 
HETATM 22 C C27 VNS . . . H 3 -15.841 61.197 -10.965 1 68.8 ? C27 VNS 1302 A 1 
HETATM 23 C C28 VNS . . . H 3 -18.901 60.802 -9.924 1 68.18 ? C28 VNS 1302 A 1 
HETATM 24 C C29 VNS . . . H 3 -20.072 60.472 -9.167 1 64.56 ? C29 VNS 1302 A 1 
HETATM 25 C C30 VNS . . . H 3 -20.338 61.107 -7.914 1 49.14 ? C30 VNS 1302 A 1 
HETATM 26 C C31 VNS . . . H 3 -21.485 60.946 -6.92 1 37.89 ? C31 VNS 1302 A 1 
HETATM 27 C C33 VNS . . . H 3 -22.936 60.737 -4.255 1 35.81 ? C33 VNS 1302 A 1 
HETATM 28 C C34 VNS . . . H 3 -24.332 60.763 -4.253 1 32.77 ? C34 VNS 1302 A 1 
HETATM 29 C C35 VNS . . . H 3 -25.092 59.606 -3.932 1 41.37 ? C35 VNS 1302 A 1 
HETATM 30 C C37 VNS . . . H 3 -24.443 58.38 -3.605 1 47.97 ? C37 VNS 1302 A 1 
HETATM 31 C C38 VNS . . . H 3 -23.044 58.323 -3.597 1 39.07 ? C38 VNS 1302 A 1 
HETATM 32 C C39 VNS . . . H 3 -22.293 59.486 -3.921 1 40.97 ? C39 VNS 1302 A 1 
HETATM 33 F F36 VNS . . . H 3 -26.396 59.672 -3.932 1 46.21 ? F36 VNS 1302 A 1 
HETATM 34 N N03 VNS . . . H 3 -23.794 63.93 -3.647 1 45.22 ? N03 VNS 1302 A 1 
HETATM 35 N N05 VNS . . . H 3 -25.247 65.842 -2.776 1 43.2 ? N05 VNS 1302 A 1 
HETATM 36 N N10 VNS . . . H 3 -21.243 61.896 -5.788 1 37.56 ? N10 VNS 1302 A 1 
HETATM 37 N N22 VNS . . . H 3 -9.969 62.822 -11.25 1 109 ? N22 VNS 1302 A 1 
HETATM 38 O O32 VNS . . . H 3 -19.537 63.418 -5.341 1 38.31 ? O32 VNS 1302 A 1 
HETATM 39 O O40 VNS . . . H 3 -20.909 59.455 -3.907 1 33.53 ? O40 VNS 1302 A 1 
HETATM 40 S S08 VNS . . . H 3 -25.582 65.378 -5.281 1 52.68 ? S08 VNS 1302 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           40 
#