data_7JXY
#
_model_server_result.job_id            t2Wvpp55bdkBUL88CVEbJQ 
_model_server_result.datetime_utc      '2024-11-15 02:59:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7jxy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
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_entry.id    7JXY 
#
_exptl.entry_id    7JXY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              308.338 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3S)-1-[1-(2-aminopyrimidin-4-yl)-1H-pyrazolo[4,3-c]pyridin-6-yl]-3-methylpent-1-yn-3-ol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7JXY 
_cell.length_a            87.28 
_cell.length_b            87.28 
_cell.length_c            151.43 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7JXY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    'P 4nw 2abw' 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C16 H16 N6 O' 
_chem_comp.formula_weight    308.338 
_chem_comp.id                VSY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3S)-1-[1-(2-aminopyrimidin-4-yl)-1H-pyrazolo[4,3-c]pyridin-6-yl]-3-methylpent-1-yn-3-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C7 N4 VSY doub 376 n y 
C7 C6 VSY sing 377 n y 
N4 N3 VSY sing 378 n y 
C6 C8 VSY doub 379 n y 
C6 C5 VSY sing 380 n y 
C8 N5 VSY sing 381 n y 
N3 C5 VSY sing 382 n y 
N3 C4 VSY sing 383 n n 
C3 C4 VSY doub 384 n y 
C3 C2 VSY sing 385 n y 
C5 C16 VSY doub 386 n y 
C4 N6 VSY sing 387 n y 
C2 N2 VSY doub 388 n y 
N5 C9 VSY doub 389 n y 
C16 C9 VSY sing 390 n y 
N6 C1 VSY doub 391 n y 
N2 C1 VSY sing 392 n y 
C9 C10 VSY sing 393 n n 
C1 N1 VSY sing 394 n n 
C10 C11 VSY trip 395 n n 
C11 C12 VSY sing 396 n n 
C13 C12 VSY sing 397 n n 
C12 O1 VSY sing 398 n n 
C12 C14 VSY sing 399 n n 
C14 C15 VSY sing 400 n n 
N1 H1 VSY sing 401 n n 
N1 H2 VSY sing 402 n n 
C7 H3 VSY sing 403 n n 
C8 H4 VSY sing 404 n n 
C13 H5 VSY sing 405 n n 
C13 H6 VSY sing 406 n n 
C13 H7 VSY sing 407 n n 
C15 H8 VSY sing 408 n n 
C15 H9 VSY sing 409 n n 
C15 H10 VSY sing 410 n n 
C14 H11 VSY sing 411 n n 
C14 H12 VSY sing 412 n n 
C16 H13 VSY sing 413 n n 
C2 H14 VSY sing 414 n n 
C3 H15 VSY sing 415 n n 
O1 H16 VSY sing 416 n n 
#
_atom_sites.entry_id                     7JXY 
_atom_sites.fract_transf_matrix[1][1]    0.011457 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011457 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006604 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 VSY A 1 401 401 VSY LIG . 
D 2 VSY B 1 401 401 VSY LIG . 
E 3 HOH A 1 501 22 HOH HOH . 
E 3 HOH A 2 502 33 HOH HOH . 
E 3 HOH A 3 503 15 HOH HOH . 
E 3 HOH A 4 504 30 HOH HOH . 
E 3 HOH A 5 505 16 HOH HOH . 
E 3 HOH A 6 506 24 HOH HOH . 
E 3 HOH A 7 507 19 HOH HOH . 
E 3 HOH A 8 508 6 HOH HOH . 
E 3 HOH A 9 509 9 HOH HOH . 
E 3 HOH A 10 510 31 HOH HOH . 
E 3 HOH A 11 511 20 HOH HOH . 
E 3 HOH A 12 512 8 HOH HOH . 
E 3 HOH A 13 513 17 HOH HOH . 
E 3 HOH A 14 514 21 HOH HOH . 
E 3 HOH A 15 515 10 HOH HOH . 
E 3 HOH A 16 516 1 HOH HOH . 
E 3 HOH A 17 517 2 HOH HOH . 
E 3 HOH A 18 518 28 HOH HOH . 
E 3 HOH A 19 519 4 HOH HOH . 
E 3 HOH A 20 520 13 HOH HOH . 
E 3 HOH A 21 521 26 HOH HOH . 
E 3 HOH A 22 522 12 HOH HOH . 
E 3 HOH A 23 523 27 HOH HOH . 
F 3 HOH B 1 501 25 HOH HOH . 
F 3 HOH B 2 502 18 HOH HOH . 
F 3 HOH B 3 503 11 HOH HOH . 
F 3 HOH B 4 504 23 HOH HOH . 
F 3 HOH B 5 505 35 HOH HOH . 
F 3 HOH B 6 506 14 HOH HOH . 
F 3 HOH B 7 507 5 HOH HOH . 
F 3 HOH B 8 508 7 HOH HOH . 
F 3 HOH B 9 509 34 HOH HOH . 
F 3 HOH B 10 510 3 HOH HOH . 
F 3 HOH B 11 511 29 HOH HOH . 
F 3 HOH B 12 512 32 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 VSY . . . D 2 -21.573 -41.483 42.507 1 51.42 ? N1 VSY 401 B 1 
HETATM 2 N N3 VSY . . . D 2 -24.192 -42.541 46.193 1 61.71 ? N3 VSY 401 B 1 
HETATM 3 C C4 VSY . . . D 2 -23.372 -42.97 45.122 1 54.51 ? C4 VSY 401 B 1 
HETATM 4 C C5 VSY . . . D 2 -24.505 -41.275 46.609 1 63.67 ? C5 VSY 401 B 1 
HETATM 5 C C6 VSY . . . D 2 -25.366 -41.377 47.711 1 58.99 ? C6 VSY 401 B 1 
HETATM 6 C C7 VSY . . . D 2 -25.531 -42.773 47.898 1 60.18 ? C7 VSY 401 B 1 
HETATM 7 C C8 VSY . . . D 2 -25.837 -40.211 48.337 1 51.42 ? C8 VSY 401 B 1 
HETATM 8 C C10 VSY . . . D 2 -24.27 -37.567 46.38 1 68.44 ? C10 VSY 401 B 1 
HETATM 9 C C13 VSY . . . D 2 -23.991 -34.817 44.272 1 68.37 ? C13 VSY 401 B 1 
HETATM 10 C C15 VSY . . . D 2 -21.252 -36.213 44.914 1 64.58 ? C15 VSY 401 B 1 
HETATM 11 C C1 VSY . . . D 2 -22.09 -42.42 43.304 1 58.24 ? C1 VSY 401 B 1 
HETATM 12 C C11 VSY . . . D 2 -23.874 -36.488 46.085 1 60.25 ? C11 VSY 401 B 1 
HETATM 13 C C12 VSY . . . D 2 -23.457 -35.147 45.657 1 70.01 ? C12 VSY 401 B 1 
HETATM 14 C C14 VSY . . . D 2 -21.909 -35.104 45.697 1 61.4 ? C14 VSY 401 B 1 
HETATM 15 C C16 VSY . . . D 2 -24.123 -40.022 46.144 1 62.81 ? C16 VSY 401 B 1 
HETATM 16 C C2 VSY . . . D 2 -22.328 -44.631 43.84 1 57.27 ? C2 VSY 401 B 1 
HETATM 17 C C3 VSY . . . D 2 -23.128 -44.304 44.904 1 55.43 ? C3 VSY 401 B 1 
HETATM 18 C C9 VSY . . . D 2 -24.637 -38.895 46.807 1 62.63 ? C9 VSY 401 B 1 
HETATM 19 N N2 VSY . . . D 2 -21.8 -43.711 43.029 1 56.92 ? N2 VSY 401 B 1 
HETATM 20 N N4 VSY . . . D 2 -24.843 -43.454 47.005 1 63.66 ? N4 VSY 401 B 1 
HETATM 21 N N5 VSY . . . D 2 -25.453 -38.994 47.872 1 65.84 ? N5 VSY 401 B 1 
HETATM 22 N N6 VSY . . . D 2 -22.868 -42.022 44.334 1 56.09 ? N6 VSY 401 B 1 
HETATM 23 O O1 VSY . . . D 2 -23.96 -34.182 46.579 1 65.26 ? O1 VSY 401 B 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           377 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#