data_7JXZ # _model_server_result.job_id 4f6vVH3Y7rK0f7h8GYSzbA _model_server_result.datetime_utc '2024-11-04 23:06:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jxz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":201}' # _entry.id 7JXZ # _exptl.entry_id 7JXZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 96.2 _cell.angle_beta 108.05 _cell.angle_gamma 117.6 _cell.entry_id 7JXZ _cell.length_a 53.74 _cell.length_b 56.31 _cell.length_c 59.05 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JXZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 J N N ? 3 M N N ? 3 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 E FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc2 E FE HEM . A HEM 201 1_555 F O CMO . A CMO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc3 B NE2 HIS 92 B HIS 92 1_555 J FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc4 J FE HEM . B HEM 201 1_555 K O CMO . B CMO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc5 C NE2 HIS 87 C HIS 87 1_555 M FE HEM . C HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc6 M FE HEM . C HEM 201 1_555 N O CMO . C CMO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc7 D NE2 HIS 92 D HIS 92 1_555 R FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc8 R FE HEM . D HEM 201 1_555 S O CMO . D CMO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 143 n n CHA C4D HEM doub 144 n n CHA HHA HEM sing 145 n n CHB C4A HEM sing 146 n n CHB C1B HEM doub 147 n n CHB HHB HEM sing 148 n n CHC C4B HEM sing 149 n n CHC C1C HEM doub 150 n n CHC HHC HEM sing 151 n n CHD C4C HEM doub 152 n n CHD C1D HEM sing 153 n n CHD HHD HEM sing 154 n n C1A C2A HEM doub 155 n y C1A NA HEM sing 156 n y C2A C3A HEM sing 157 n y C2A CAA HEM sing 158 n n C3A C4A HEM doub 159 n y C3A CMA HEM sing 160 n n C4A NA HEM sing 161 n y CMA HMA HEM sing 162 n n CMA HMAA HEM sing 163 n n CMA HMAB HEM sing 164 n n CAA CBA HEM sing 165 n n CAA HAA HEM sing 166 n n CAA HAAA HEM sing 167 n n CBA CGA HEM sing 168 n n CBA HBA HEM sing 169 n n CBA HBAA HEM sing 170 n n CGA O1A HEM doub 171 n n CGA O2A HEM sing 172 n n C1B C2B HEM sing 173 n n C1B NB HEM sing 174 n n C2B C3B HEM doub 175 n n C2B CMB HEM sing 176 n n C3B C4B HEM sing 177 n n C3B CAB HEM sing 178 n n C4B NB HEM doub 179 n n CMB HMB HEM sing 180 n n CMB HMBA HEM sing 181 n n CMB HMBB HEM sing 182 n n CAB CBB HEM doub 183 n n CAB HAB HEM sing 184 n n CBB HBB HEM sing 185 n n CBB HBBA HEM sing 186 n n C1C C2C HEM sing 187 n y C1C NC HEM sing 188 n y C2C C3C HEM doub 189 n y C2C CMC HEM sing 190 n n C3C C4C HEM sing 191 n y C3C CAC HEM sing 192 n n C4C NC HEM sing 193 n y CMC HMC HEM sing 194 n n CMC HMCA HEM sing 195 n n CMC HMCB HEM sing 196 n n CAC CBC HEM doub 197 n n CAC HAC HEM sing 198 n n CBC HBC HEM sing 199 n n CBC HBCA HEM sing 200 n n C1D C2D HEM sing 201 n n C1D ND HEM doub 202 n n C2D C3D HEM doub 203 n n C2D CMD HEM sing 204 n n C3D C4D HEM sing 205 n n C3D CAD HEM sing 206 n n C4D ND HEM sing 207 n n CMD HMD HEM sing 208 n n CMD HMDA HEM sing 209 n n CMD HMDB HEM sing 210 n n CAD CBD HEM sing 211 n n CAD HAD HEM sing 212 n n CAD HADA HEM sing 213 n n CBD CGD HEM sing 214 n n CBD HBD HEM sing 215 n n CBD HBDA HEM sing 216 n n CGD O1D HEM doub 217 n n CGD O2D HEM sing 218 n n O2A H2A HEM sing 219 n n O2D H2D HEM sing 220 n n FE NA HEM sing 221 n n FE NB HEM sing 222 n n FE NC HEM sing 223 n n FE ND HEM sing 224 n n # _atom_sites.entry_id 7JXZ _atom_sites.fract_transf_matrix[1][1] 0.018608 _atom_sites.fract_transf_matrix[1][2] 0.009728 _atom_sites.fract_transf_matrix[1][3] 0.009397 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020039 _atom_sites.fract_transf_matrix[2][3] 0.006268 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018662 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HEM A 1 201 142 HEM HEM . F 4 CMO A 1 202 143 CMO CMO . G 5 O4B A 1 203 145 O4B O4B . H 6 VOJ A 1 204 4000 VOJ PFE . I 7 GOL A 1 205 1 GOL GOL . J 3 HEM B 1 201 147 HEM HEM . K 4 CMO B 1 202 148 CMO CMO . L 5 O4B B 1 203 149 O4B O4B . M 3 HEM C 1 201 142 HEM HEM . N 4 CMO C 1 202 143 CMO CMO . O 5 O4B C 1 203 146 O4B O4B . P 5 O4B C 1 204 147 O4B O4B . Q 6 VOJ C 1 205 4000 VOJ PFE . R 3 HEM D 1 201 147 HEM HEM . S 4 CMO D 1 202 148 CMO CMO . T 5 O4B D 1 203 149 O4B O4B . U 8 HOH A 1 301 101 HOH HOH . U 8 HOH A 2 302 103 HOH HOH . U 8 HOH A 3 303 63 HOH HOH . U 8 HOH A 4 304 105 HOH HOH . U 8 HOH A 5 305 91 HOH HOH . U 8 HOH A 6 306 69 HOH HOH . U 8 HOH A 7 307 19 HOH HOH . U 8 HOH A 8 308 100 HOH HOH . U 8 HOH A 9 309 61 HOH HOH . U 8 HOH A 10 310 74 HOH HOH . U 8 HOH A 11 311 27 HOH HOH . U 8 HOH A 12 312 82 HOH HOH . U 8 HOH A 13 313 92 HOH HOH . U 8 HOH A 14 314 26 HOH HOH . U 8 HOH A 15 315 42 HOH HOH . U 8 HOH A 16 316 56 HOH HOH . U 8 HOH A 17 317 38 HOH HOH . U 8 HOH A 18 318 77 HOH HOH . U 8 HOH A 19 319 39 HOH HOH . U 8 HOH A 20 320 54 HOH HOH . U 8 HOH A 21 321 79 HOH HOH . U 8 HOH A 22 322 14 HOH HOH . U 8 HOH A 23 323 55 HOH HOH . V 8 HOH B 1 301 65 HOH HOH . V 8 HOH B 2 302 2 HOH HOH . V 8 HOH B 3 303 3 HOH HOH . V 8 HOH B 4 304 12 HOH HOH . V 8 HOH B 5 305 30 HOH HOH . V 8 HOH B 6 306 16 HOH HOH . V 8 HOH B 7 307 41 HOH HOH . V 8 HOH B 8 308 88 HOH HOH . V 8 HOH B 9 309 10 HOH HOH . V 8 HOH B 10 310 87 HOH HOH . V 8 HOH B 11 311 33 HOH HOH . V 8 HOH B 12 312 71 HOH HOH . V 8 HOH B 13 313 36 HOH HOH . V 8 HOH B 14 314 15 HOH HOH . V 8 HOH B 15 315 8 HOH HOH . V 8 HOH B 16 316 46 HOH HOH . V 8 HOH B 17 317 68 HOH HOH . V 8 HOH B 18 318 80 HOH HOH . V 8 HOH B 19 319 73 HOH HOH . V 8 HOH B 20 320 34 HOH HOH . V 8 HOH B 21 321 40 HOH HOH . V 8 HOH B 22 322 60 HOH HOH . V 8 HOH B 23 323 35 HOH HOH . V 8 HOH B 24 324 102 HOH HOH . V 8 HOH B 25 325 29 HOH HOH . V 8 HOH B 26 326 25 HOH HOH . V 8 HOH B 27 327 24 HOH HOH . V 8 HOH B 28 328 75 HOH HOH . W 8 HOH C 1 301 106 HOH HOH . W 8 HOH C 2 302 57 HOH HOH . W 8 HOH C 3 303 48 HOH HOH . W 8 HOH C 4 304 90 HOH HOH . W 8 HOH C 5 305 43 HOH HOH . W 8 HOH C 6 306 104 HOH HOH . W 8 HOH C 7 307 85 HOH HOH . W 8 HOH C 8 308 51 HOH HOH . W 8 HOH C 9 309 22 HOH HOH . W 8 HOH C 10 310 50 HOH HOH . W 8 HOH C 11 311 64 HOH HOH . W 8 HOH C 12 312 67 HOH HOH . W 8 HOH C 13 313 4 HOH HOH . W 8 HOH C 14 314 18 HOH HOH . W 8 HOH C 15 315 52 HOH HOH . W 8 HOH C 16 316 107 HOH HOH . W 8 HOH C 17 317 66 HOH HOH . W 8 HOH C 18 318 53 HOH HOH . W 8 HOH C 19 319 83 HOH HOH . W 8 HOH C 20 320 47 HOH HOH . W 8 HOH C 21 321 11 HOH HOH . W 8 HOH C 22 322 6 HOH HOH . W 8 HOH C 23 323 37 HOH HOH . W 8 HOH C 24 324 99 HOH HOH . W 8 HOH C 25 325 59 HOH HOH . W 8 HOH C 26 326 44 HOH HOH . W 8 HOH C 27 327 13 HOH HOH . W 8 HOH C 28 328 93 HOH HOH . X 8 HOH D 1 301 89 HOH HOH . X 8 HOH D 2 302 97 HOH HOH . X 8 HOH D 3 303 96 HOH HOH . X 8 HOH D 4 304 1 HOH HOH . X 8 HOH D 5 305 78 HOH HOH . X 8 HOH D 6 306 23 HOH HOH . X 8 HOH D 7 307 108 HOH HOH . X 8 HOH D 8 308 98 HOH HOH . X 8 HOH D 9 309 76 HOH HOH . X 8 HOH D 10 310 28 HOH HOH . X 8 HOH D 11 311 94 HOH HOH . X 8 HOH D 12 312 84 HOH HOH . X 8 HOH D 13 313 5 HOH HOH . X 8 HOH D 14 314 70 HOH HOH . X 8 HOH D 15 315 95 HOH HOH . X 8 HOH D 16 316 21 HOH HOH . X 8 HOH D 17 317 20 HOH HOH . X 8 HOH D 18 318 17 HOH HOH . X 8 HOH D 19 319 72 HOH HOH . X 8 HOH D 20 320 49 HOH HOH . X 8 HOH D 21 321 32 HOH HOH . X 8 HOH D 22 322 7 HOH HOH . X 8 HOH D 23 323 81 HOH HOH . X 8 HOH D 24 324 86 HOH HOH . X 8 HOH D 25 325 62 HOH HOH . X 8 HOH D 26 326 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . M 3 -30.173 8.715 -3.986 1 20.55 ? CHA HEM 201 C 1 HETATM 2 C CHB HEM . . . M 3 -25.712 9.862 -5.271 1 20.28 ? CHB HEM 201 C 1 HETATM 3 C CHC HEM . . . M 3 -24.02 7.177 -1.687 1 19.85 ? CHC HEM 201 C 1 HETATM 4 C CHD HEM . . . M 3 -28.471 5.916 -0.452 1 20.19 ? CHD HEM 201 C 1 HETATM 5 C C1A HEM . . . M 3 -29.088 9.26 -4.639 1 20.12 ? C1A HEM 201 C 1 HETATM 6 C C2A HEM . . . M 3 -29.143 10.074 -5.824 1 20.61 ? C2A HEM 201 C 1 HETATM 7 C C3A HEM . . . M 3 -27.876 10.369 -6.163 1 20.52 ? C3A HEM 201 C 1 HETATM 8 C C4A HEM . . . M 3 -27.073 9.773 -5.226 1 19.91 ? C4A HEM 201 C 1 HETATM 9 C CMA HEM . . . M 3 -27.431 11.25 -7.314 1 21.88 ? CMA HEM 201 C 1 HETATM 10 C CAA HEM . . . M 3 -30.35 10.491 -6.635 1 22.11 ? CAA HEM 201 C 1 HETATM 11 C CBA HEM . . . M 3 -31.371 11.305 -5.855 1 23.83 ? CBA HEM 201 C 1 HETATM 12 C CGA HEM . . . M 3 -31.968 12.45 -6.686 1 26.41 ? CGA HEM 201 C 1 HETATM 13 O O1A HEM . . . M 3 -32.094 12.399 -7.918 1 28.05 ? O1A HEM 201 C 1 HETATM 14 O O2A HEM . . . M 3 -32.337 13.569 -6.049 1 27.65 ? O2A HEM 201 C 1 HETATM 15 C C1B HEM . . . M 3 -24.849 9.269 -4.317 1 19.71 ? C1B HEM 201 C 1 HETATM 16 C C2B HEM . . . M 3 -23.451 9.434 -4.395 1 19.8 ? C2B HEM 201 C 1 HETATM 17 C C3B HEM . . . M 3 -22.948 8.644 -3.448 1 19.98 ? C3B HEM 201 C 1 HETATM 18 C C4B HEM . . . M 3 -24.127 8.04 -2.779 1 19.53 ? C4B HEM 201 C 1 HETATM 19 C CMB HEM . . . M 3 -22.743 10.344 -5.392 1 21.55 ? CMB HEM 201 C 1 HETATM 20 C CAB HEM . . . M 3 -21.559 8.37 -3.032 1 21.05 ? CAB HEM 201 C 1 HETATM 21 C CBB HEM . . . M 3 -20.532 9.097 -3.414 1 30.11 ? CBB HEM 201 C 1 HETATM 22 C C1C HEM . . . M 3 -25.056 6.6 -1.054 1 19.1 ? C1C HEM 201 C 1 HETATM 23 C C2C HEM . . . M 3 -24.892 5.641 -0.03 1 19.62 ? C2C HEM 201 C 1 HETATM 24 C C3C HEM . . . M 3 -26.179 5.241 0.366 1 19.71 ? C3C HEM 201 C 1 HETATM 25 C C4C HEM . . . M 3 -27.103 6.008 -0.506 1 19.43 ? C4C HEM 201 C 1 HETATM 26 C CMC HEM . . . M 3 -23.573 5.178 0.517 1 21 ? CMC HEM 201 C 1 HETATM 27 C CAC HEM . . . M 3 -26.574 4.262 1.426 1 20.45 ? CAC HEM 201 C 1 HETATM 28 C CBC HEM . . . M 3 -26.051 3.024 1.46 1 22.11 ? CBC HEM 201 C 1 HETATM 29 C C1D HEM . . . M 3 -29.282 6.665 -1.32 1 19.95 ? C1D HEM 201 C 1 HETATM 30 C C2D HEM . . . M 3 -30.76 6.51 -1.284 1 20.44 ? C2D HEM 201 C 1 HETATM 31 C C3D HEM . . . M 3 -31.241 7.309 -2.231 1 20.61 ? C3D HEM 201 C 1 HETATM 32 C C4D HEM . . . M 3 -30.051 7.933 -2.846 1 20.05 ? C4D HEM 201 C 1 HETATM 33 C CMD HEM . . . M 3 -31.551 5.645 -0.363 1 22.02 ? CMD HEM 201 C 1 HETATM 34 C CAD HEM . . . M 3 -32.71 7.459 -2.641 1 21.88 ? CAD HEM 201 C 1 HETATM 35 C CBD HEM . . . M 3 -33.054 6.3 -3.616 1 23.7 ? CBD HEM 201 C 1 HETATM 36 C CGD HEM . . . M 3 -34.411 6.446 -4.303 1 26.51 ? CGD HEM 201 C 1 HETATM 37 O O1D HEM . . . M 3 -34.626 6.125 -5.462 1 27.42 ? O1D HEM 201 C 1 HETATM 38 O O2D HEM . . . M 3 -35.444 6.926 -3.637 1 27.84 ? O2D HEM 201 C 1 HETATM 39 N NA HEM . . . M 3 -27.793 9.065 -4.236 1 19.89 ? NA HEM 201 C 1 HETATM 40 N NB HEM . . . M 3 -25.245 8.487 -3.304 1 19.33 ? NB HEM 201 C 1 HETATM 41 N NC HEM . . . M 3 -26.372 6.846 -1.358 1 19.27 ? NC HEM 201 C 1 HETATM 42 N ND HEM . . . M 3 -28.903 7.538 -2.268 1 19.63 ? ND HEM 201 C 1 HETATM 43 FE FE HEM . . . M 3 -27.059 8.085 -2.674 1 19.5 ? FE HEM 201 C 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #