data_7JYB
#
_model_server_result.job_id            LTw1WqaB3STTW2FCOyoefw 
_model_server_result.datetime_utc      '2024-11-01 19:29:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7jyb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":401}' 
#
_entry.id    7JYB 
#
_exptl.entry_id    7JYB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          119.132 
_cell.angle_gamma         90 
_cell.entry_id            7JYB 
_cell.length_a            94.2 
_cell.length_b            214.38 
_cell.length_c            95.2 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7JYB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
? tetrameric 4 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,R,S,T,U 1 1 
E,F,G,H,M,N,O,P,Q,V,W,X,Y 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 P N N 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 83 n n 
N1 C10 FMN doub 84 n n 
C2 O2 FMN doub 85 n n 
C2 N3 FMN sing 86 n n 
N3 C4 FMN sing 87 n n 
N3 HN3 FMN sing 88 n n 
C4 O4 FMN doub 89 n n 
C4 C4A FMN sing 90 n n 
C4A N5 FMN doub 91 n n 
C4A C10 FMN sing 92 n n 
N5 C5A FMN sing 93 n n 
C5A C6 FMN doub 94 n y 
C5A C9A FMN sing 95 n y 
C6 C7 FMN sing 96 n y 
C6 H6 FMN sing 97 n n 
C7 C7M FMN sing 98 n n 
C7 C8 FMN doub 99 n y 
C7M HM71 FMN sing 100 n n 
C7M HM72 FMN sing 101 n n 
C7M HM73 FMN sing 102 n n 
C8 C8M FMN sing 103 n n 
C8 C9 FMN sing 104 n y 
C8M HM81 FMN sing 105 n n 
C8M HM82 FMN sing 106 n n 
C8M HM83 FMN sing 107 n n 
C9 C9A FMN doub 108 n y 
C9 H9 FMN sing 109 n n 
C9A N10 FMN sing 110 n n 
N10 C10 FMN sing 111 n n 
N10 C1' FMN sing 112 n n 
C1' C2' FMN sing 113 n n 
C1' "H1'1" FMN sing 114 n n 
C1' "H1'2" FMN sing 115 n n 
C2' O2' FMN sing 116 n n 
C2' C3' FMN sing 117 n n 
C2' H2' FMN sing 118 n n 
O2' HO2' FMN sing 119 n n 
C3' O3' FMN sing 120 n n 
C3' C4' FMN sing 121 n n 
C3' H3' FMN sing 122 n n 
O3' HO3' FMN sing 123 n n 
C4' O4' FMN sing 124 n n 
C4' C5' FMN sing 125 n n 
C4' H4' FMN sing 126 n n 
O4' HO4' FMN sing 127 n n 
C5' O5' FMN sing 128 n n 
C5' "H5'1" FMN sing 129 n n 
C5' "H5'2" FMN sing 130 n n 
O5' P FMN sing 131 n n 
P O1P FMN doub 132 n n 
P O2P FMN sing 133 n n 
P O3P FMN sing 134 n n 
O2P HOP2 FMN sing 135 n n 
O3P HOP3 FMN sing 136 n n 
#
_atom_sites.entry_id                     7JYB 
_atom_sites.fract_transf_matrix[1][1]    0.010616 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005916 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004665 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012025 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 FMN A 1 401 401 FMN FMN . 
J 2 FMN B 1 401 401 FMN FMN . 
K 2 FMN C 1 401 401 FMN FMN . 
L 2 FMN D 1 401 401 FMN FMN . 
M 2 FMN E 1 401 401 FMN FMN . 
N 3 SIN E 1 402 501 SIN SIN . 
O 4 PO4 F 1 501 501 PO4 PO4 . 
P 2 FMN G 1 401 401 FMN FMN . 
Q 4 PO4 H 1 401 401 PO4 PO4 . 
R 5 HOH A 1 501 27 HOH HOH . 
R 5 HOH A 2 502 9 HOH HOH . 
R 5 HOH A 3 503 5 HOH HOH . 
R 5 HOH A 4 504 1 HOH HOH . 
R 5 HOH A 5 505 30 HOH HOH . 
R 5 HOH A 6 506 6 HOH HOH . 
R 5 HOH A 7 507 39 HOH HOH . 
R 5 HOH A 8 508 46 HOH HOH . 
R 5 HOH A 9 509 47 HOH HOH . 
R 5 HOH A 10 510 38 HOH HOH . 
S 5 HOH B 1 501 3 HOH HOH . 
S 5 HOH B 2 502 32 HOH HOH . 
S 5 HOH B 3 503 34 HOH HOH . 
S 5 HOH B 4 504 40 HOH HOH . 
S 5 HOH B 5 505 8 HOH HOH . 
S 5 HOH B 6 506 23 HOH HOH . 
T 5 HOH C 1 501 33 HOH HOH . 
T 5 HOH C 2 502 28 HOH HOH . 
T 5 HOH C 3 503 25 HOH HOH . 
T 5 HOH C 4 504 11 HOH HOH . 
T 5 HOH C 5 505 48 HOH HOH . 
T 5 HOH C 6 506 44 HOH HOH . 
T 5 HOH C 7 507 17 HOH HOH . 
T 5 HOH C 8 508 18 HOH HOH . 
U 5 HOH D 1 501 16 HOH HOH . 
V 5 HOH E 1 501 31 HOH HOH . 
V 5 HOH E 2 502 36 HOH HOH . 
V 5 HOH E 3 503 37 HOH HOH . 
V 5 HOH E 4 504 26 HOH HOH . 
V 5 HOH E 5 505 42 HOH HOH . 
V 5 HOH E 6 506 41 HOH HOH . 
V 5 HOH E 7 507 19 HOH HOH . 
V 5 HOH E 8 508 10 HOH HOH . 
V 5 HOH E 9 509 12 HOH HOH . 
V 5 HOH E 10 510 7 HOH HOH . 
V 5 HOH E 11 511 14 HOH HOH . 
V 5 HOH E 12 512 13 HOH HOH . 
V 5 HOH E 13 513 24 HOH HOH . 
V 5 HOH E 14 514 2 HOH HOH . 
V 5 HOH E 15 515 4 HOH HOH . 
W 5 HOH F 1 601 15 HOH HOH . 
W 5 HOH F 2 602 35 HOH HOH . 
W 5 HOH F 3 603 22 HOH HOH . 
X 5 HOH G 1 501 43 HOH HOH . 
X 5 HOH G 2 502 20 HOH HOH . 
X 5 HOH G 3 503 45 HOH HOH . 
Y 5 HOH H 1 501 29 HOH HOH . 
Y 5 HOH H 2 502 21 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . K 2 -26.804 -0.073 19.034 1 81.28 ? N1 FMN 401 C 1 
HETATM 2 C C2 FMN . . . K 2 -25.987 0.896 18.63 1 78.73 ? C2 FMN 401 C 1 
HETATM 3 O O2 FMN . . . K 2 -26.462 1.808 17.974 1 80.7 ? O2 FMN 401 C 1 
HETATM 4 N N3 FMN . . . K 2 -24.673 0.924 18.886 1 78.44 ? N3 FMN 401 C 1 
HETATM 5 C C4 FMN . . . K 2 -24.073 -0.066 19.589 1 82.57 ? C4 FMN 401 C 1 
HETATM 6 O O4 FMN . . . K 2 -22.88 -0.037 19.827 1 84.2 ? O4 FMN 401 C 1 
HETATM 7 C C4A FMN . . . K 2 -24.932 -1.176 20.063 1 79.26 ? C4A FMN 401 C 1 
HETATM 8 N N5 FMN . . . K 2 -24.462 -2.17 20.772 1 76.1 ? N5 FMN 401 C 1 
HETATM 9 C C5A FMN . . . K 2 -25.278 -3.129 21.23 1 77.14 ? C5A FMN 401 C 1 
HETATM 10 C C6 FMN . . . K 2 -24.755 -4.151 22.048 1 74 ? C6 FMN 401 C 1 
HETATM 11 C C7 FMN . . . K 2 -25.585 -5.095 22.573 1 78.15 ? C7 FMN 401 C 1 
HETATM 12 C C7M FMN . . . K 2 -25.021 -6.163 23.473 1 73.24 ? C7M FMN 401 C 1 
HETATM 13 C C8 FMN . . . K 2 -26.949 -5.073 22.298 1 84.79 ? C8 FMN 401 C 1 
HETATM 14 C C8M FMN . . . K 2 -27.849 -6.123 22.899 1 71.35 ? C8M FMN 401 C 1 
HETATM 15 C C9 FMN . . . K 2 -27.487 -4.093 21.489 1 83.82 ? C9 FMN 401 C 1 
HETATM 16 C C9A FMN . . . K 2 -26.664 -3.105 20.949 1 81.18 ? C9A FMN 401 C 1 
HETATM 17 N N10 FMN . . . K 2 -27.201 -2.084 20.186 1 80.02 ? N10 FMN 401 C 1 
HETATM 18 C C10 FMN . . . K 2 -26.366 -1.106 19.734 1 77.94 ? C10 FMN 401 C 1 
HETATM 19 C C1' FMN . . . K 2 -28.639 -2.024 19.89 1 89.58 ? C1' FMN 401 C 1 
HETATM 20 C C2' FMN . . . K 2 -29.019 -2.792 18.614 1 86.14 ? C2' FMN 401 C 1 
HETATM 21 O O2' FMN . . . K 2 -27.855 -3.071 17.832 1 69.42 ? O2' FMN 401 C 1 
HETATM 22 C C3' FMN . . . K 2 -30.003 -1.977 17.762 1 94.13 ? C3' FMN 401 C 1 
HETATM 23 O O3' FMN . . . K 2 -29.456 -0.679 17.505 1 91.84 ? O3' FMN 401 C 1 
HETATM 24 C C4' FMN . . . K 2 -31.368 -1.827 18.451 1 91.03 ? C4' FMN 401 C 1 
HETATM 25 O O4' FMN . . . K 2 -31.581 -2.865 19.413 1 91.81 ? O4' FMN 401 C 1 
HETATM 26 C C5' FMN . . . K 2 -32.484 -1.876 17.399 1 93.56 ? C5' FMN 401 C 1 
HETATM 27 O O5' FMN . . . K 2 -32.91 -3.225 17.178 1 92.79 ? O5' FMN 401 C 1 
HETATM 28 P P FMN . . . K 2 -34.343 -3.809 17.639 1 80.47 ? P FMN 401 C 1 
HETATM 29 O O1P FMN . . . K 2 -34.683 -4.983 16.81 1 77.66 ? O1P FMN 401 C 1 
HETATM 30 O O2P FMN . . . K 2 -35.484 -2.692 17.45 1 83.58 ? O2P FMN 401 C 1 
HETATM 31 O O3P FMN . . . K 2 -34.275 -4.261 19.184 1 84.9 ? O3P FMN 401 C 1 
#
_model_server_stats.io_time_ms              220 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    66 
_model_server_stats.query_time_ms           628 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           31 
#