data_7JYB # _model_server_result.job_id 5xGZgqoSbWLhmQrqTPnoTw _model_server_result.datetime_utc '2024-11-01 19:41:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jyb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":401}' # _entry.id 7JYB # _exptl.entry_id 7JYB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.132 _cell.angle_gamma 90 _cell.entry_id 7JYB _cell.length_a 94.2 _cell.length_b 214.38 _cell.length_c 95.2 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JYB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,R,S,T,U 1 1 E,F,G,H,M,N,O,P,Q,V,W,X,Y 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 O N N ? 4 Q N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 314 n n P O2 PO4 sing 315 n n P O3 PO4 sing 316 n n P O4 PO4 sing 317 n n # _atom_sites.entry_id 7JYB _atom_sites.fract_transf_matrix[1][1] 0.010616 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005916 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004665 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012025 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 FMN A 1 401 401 FMN FMN . J 2 FMN B 1 401 401 FMN FMN . K 2 FMN C 1 401 401 FMN FMN . L 2 FMN D 1 401 401 FMN FMN . M 2 FMN E 1 401 401 FMN FMN . N 3 SIN E 1 402 501 SIN SIN . O 4 PO4 F 1 501 501 PO4 PO4 . P 2 FMN G 1 401 401 FMN FMN . Q 4 PO4 H 1 401 401 PO4 PO4 . R 5 HOH A 1 501 27 HOH HOH . R 5 HOH A 2 502 9 HOH HOH . R 5 HOH A 3 503 5 HOH HOH . R 5 HOH A 4 504 1 HOH HOH . R 5 HOH A 5 505 30 HOH HOH . R 5 HOH A 6 506 6 HOH HOH . R 5 HOH A 7 507 39 HOH HOH . R 5 HOH A 8 508 46 HOH HOH . R 5 HOH A 9 509 47 HOH HOH . R 5 HOH A 10 510 38 HOH HOH . S 5 HOH B 1 501 3 HOH HOH . S 5 HOH B 2 502 32 HOH HOH . S 5 HOH B 3 503 34 HOH HOH . S 5 HOH B 4 504 40 HOH HOH . S 5 HOH B 5 505 8 HOH HOH . S 5 HOH B 6 506 23 HOH HOH . T 5 HOH C 1 501 33 HOH HOH . T 5 HOH C 2 502 28 HOH HOH . T 5 HOH C 3 503 25 HOH HOH . T 5 HOH C 4 504 11 HOH HOH . T 5 HOH C 5 505 48 HOH HOH . T 5 HOH C 6 506 44 HOH HOH . T 5 HOH C 7 507 17 HOH HOH . T 5 HOH C 8 508 18 HOH HOH . U 5 HOH D 1 501 16 HOH HOH . V 5 HOH E 1 501 31 HOH HOH . V 5 HOH E 2 502 36 HOH HOH . V 5 HOH E 3 503 37 HOH HOH . V 5 HOH E 4 504 26 HOH HOH . V 5 HOH E 5 505 42 HOH HOH . V 5 HOH E 6 506 41 HOH HOH . V 5 HOH E 7 507 19 HOH HOH . V 5 HOH E 8 508 10 HOH HOH . V 5 HOH E 9 509 12 HOH HOH . V 5 HOH E 10 510 7 HOH HOH . V 5 HOH E 11 511 14 HOH HOH . V 5 HOH E 12 512 13 HOH HOH . V 5 HOH E 13 513 24 HOH HOH . V 5 HOH E 14 514 2 HOH HOH . V 5 HOH E 15 515 4 HOH HOH . W 5 HOH F 1 601 15 HOH HOH . W 5 HOH F 2 602 35 HOH HOH . W 5 HOH F 3 603 22 HOH HOH . X 5 HOH G 1 501 43 HOH HOH . X 5 HOH G 2 502 20 HOH HOH . X 5 HOH G 3 503 45 HOH HOH . Y 5 HOH H 1 501 29 HOH HOH . Y 5 HOH H 2 502 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . Q 4 -69.667 -64.436 9.586 1 106.75 ? P PO4 401 H 1 HETATM 2 O O1 PO4 . . . Q 4 -69.851 -64.184 8.108 1 95.15 ? O1 PO4 401 H 1 HETATM 3 O O2 PO4 . . . Q 4 -68.293 -63.965 10.007 1 113.4 ? O2 PO4 401 H 1 HETATM 4 O O3 PO4 . . . Q 4 -69.804 -65.916 9.853 1 101.51 ? O3 PO4 401 H 1 HETATM 5 O O4 PO4 . . . Q 4 -70.726 -63.69 10.362 1 78.54 ? O4 PO4 401 H 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #