data_7JYB
#
_model_server_result.job_id            CSTAvUx4rtmS2QEjpoRDcg 
_model_server_result.datetime_utc      '2024-11-01 19:36:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7jyb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":402}' 
#
_entry.id    7JYB 
#
_exptl.entry_id    7JYB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.088 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SUCCINIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          119.132 
_cell.angle_gamma         90 
_cell.entry_id            7JYB 
_cell.length_a            94.2 
_cell.length_b            214.38 
_cell.length_c            95.2 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 7JYB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
? tetrameric 4 author_defined_assembly 2 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,R,S,T,U 1 1 
E,F,G,H,M,N,O,P,Q,V,W,X,Y 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             N 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C4 H6 O4' 
_chem_comp.formula_weight    118.088 
_chem_comp.id                SIN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SUCCINIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 SIN doub 348 n n 
C1 O2 SIN sing 349 n n 
C1 C2 SIN sing 350 n n 
O2 HO2 SIN sing 351 n n 
C2 C3 SIN sing 352 n n 
C2 H21 SIN sing 353 n n 
C2 H22 SIN sing 354 n n 
C3 C4 SIN sing 355 n n 
C3 H31 SIN sing 356 n n 
C3 H32 SIN sing 357 n n 
C4 O3 SIN doub 358 n n 
C4 O4 SIN sing 359 n n 
O4 HO4 SIN sing 360 n n 
#
_atom_sites.entry_id                     7JYB 
_atom_sites.fract_transf_matrix[1][1]    0.010616 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005916 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004665 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012025 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 FMN A 1 401 401 FMN FMN . 
J 2 FMN B 1 401 401 FMN FMN . 
K 2 FMN C 1 401 401 FMN FMN . 
L 2 FMN D 1 401 401 FMN FMN . 
M 2 FMN E 1 401 401 FMN FMN . 
N 3 SIN E 1 402 501 SIN SIN . 
O 4 PO4 F 1 501 501 PO4 PO4 . 
P 2 FMN G 1 401 401 FMN FMN . 
Q 4 PO4 H 1 401 401 PO4 PO4 . 
R 5 HOH A 1 501 27 HOH HOH . 
R 5 HOH A 2 502 9 HOH HOH . 
R 5 HOH A 3 503 5 HOH HOH . 
R 5 HOH A 4 504 1 HOH HOH . 
R 5 HOH A 5 505 30 HOH HOH . 
R 5 HOH A 6 506 6 HOH HOH . 
R 5 HOH A 7 507 39 HOH HOH . 
R 5 HOH A 8 508 46 HOH HOH . 
R 5 HOH A 9 509 47 HOH HOH . 
R 5 HOH A 10 510 38 HOH HOH . 
S 5 HOH B 1 501 3 HOH HOH . 
S 5 HOH B 2 502 32 HOH HOH . 
S 5 HOH B 3 503 34 HOH HOH . 
S 5 HOH B 4 504 40 HOH HOH . 
S 5 HOH B 5 505 8 HOH HOH . 
S 5 HOH B 6 506 23 HOH HOH . 
T 5 HOH C 1 501 33 HOH HOH . 
T 5 HOH C 2 502 28 HOH HOH . 
T 5 HOH C 3 503 25 HOH HOH . 
T 5 HOH C 4 504 11 HOH HOH . 
T 5 HOH C 5 505 48 HOH HOH . 
T 5 HOH C 6 506 44 HOH HOH . 
T 5 HOH C 7 507 17 HOH HOH . 
T 5 HOH C 8 508 18 HOH HOH . 
U 5 HOH D 1 501 16 HOH HOH . 
V 5 HOH E 1 501 31 HOH HOH . 
V 5 HOH E 2 502 36 HOH HOH . 
V 5 HOH E 3 503 37 HOH HOH . 
V 5 HOH E 4 504 26 HOH HOH . 
V 5 HOH E 5 505 42 HOH HOH . 
V 5 HOH E 6 506 41 HOH HOH . 
V 5 HOH E 7 507 19 HOH HOH . 
V 5 HOH E 8 508 10 HOH HOH . 
V 5 HOH E 9 509 12 HOH HOH . 
V 5 HOH E 10 510 7 HOH HOH . 
V 5 HOH E 11 511 14 HOH HOH . 
V 5 HOH E 12 512 13 HOH HOH . 
V 5 HOH E 13 513 24 HOH HOH . 
V 5 HOH E 14 514 2 HOH HOH . 
V 5 HOH E 15 515 4 HOH HOH . 
W 5 HOH F 1 601 15 HOH HOH . 
W 5 HOH F 2 602 35 HOH HOH . 
W 5 HOH F 3 603 22 HOH HOH . 
X 5 HOH G 1 501 43 HOH HOH . 
X 5 HOH G 2 502 20 HOH HOH . 
X 5 HOH G 3 503 45 HOH HOH . 
Y 5 HOH H 1 501 29 HOH HOH . 
Y 5 HOH H 2 502 21 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SIN . . . N 3 -22.523 -39.949 -9.722 0.8 87.36 ? C1 SIN 402 E 1 
HETATM 2 O O1 SIN . . . N 3 -21.871 -38.922 -10.003 0.8 87.02 ? O1 SIN 402 E 1 
HETATM 3 O O2 SIN . . . N 3 -23.057 -40.037 -8.594 0.8 80.73 ? O2 SIN 402 E 1 
HETATM 4 C C2 SIN . . . N 3 -22.67 -41.061 -10.735 0.8 87.49 ? C2 SIN 402 E 1 
HETATM 5 C C3 SIN . . . N 3 -21.338 -41.285 -11.441 0.8 90.6 ? C3 SIN 402 E 1 
HETATM 6 C C4 SIN . . . N 3 -20.615 -42.442 -10.791 0.8 99.79 ? C4 SIN 402 E 1 
HETATM 7 O O3 SIN . . . N 3 -19.599 -42.94 -11.326 0.8 102.06 ? O3 SIN 402 E 1 
HETATM 8 O O4 SIN . . . N 3 -21.027 -42.921 -9.712 0.8 97.8 ? O4 SIN 402 E 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           255 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           8 
#