data_7JYC # _model_server_result.job_id wUQMOGHec-8Sg9yU1_njPw _model_server_result.datetime_utc '2024-11-21 08:48:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jyc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 7JYC # _exptl.entry_id 7JYC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.71 _cell.angle_gamma 90 _cell.entry_id 7JYC _cell.length_a 113.188 _cell.length_b 52.507 _cell.length_c 45.693 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JYC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_755 -x+2,y,-z -1 0 0 0 1 0 0 0 -1 226.376 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C43 _struct_conn.ptnr2_label_comp_id NNA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NNA _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.712 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7JYC _atom_sites.fract_transf_matrix[1][1] 0.008835 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001992 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019045 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022435 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NNA A 1 401 401 NNA NNA . C 3 DMS A 1 402 402 DMS DMS . D 3 DMS A 1 403 403 DMS DMS . E 3 DMS A 1 404 404 DMS DMS . F 3 DMS A 1 405 405 DMS DMS . G 4 NA A 1 406 701 NA NA . H 5 HOH A 1 501 78 HOH HOH . H 5 HOH A 2 502 56 HOH HOH . H 5 HOH A 3 503 149 HOH HOH . H 5 HOH A 4 504 18 HOH HOH . H 5 HOH A 5 505 27 HOH HOH . H 5 HOH A 6 506 143 HOH HOH . H 5 HOH A 7 507 139 HOH HOH . H 5 HOH A 8 508 167 HOH HOH . H 5 HOH A 9 509 50 HOH HOH . H 5 HOH A 10 510 103 HOH HOH . H 5 HOH A 11 511 151 HOH HOH . H 5 HOH A 12 512 107 HOH HOH . H 5 HOH A 13 513 172 HOH HOH . H 5 HOH A 14 514 126 HOH HOH . H 5 HOH A 15 515 7 HOH HOH . H 5 HOH A 16 516 85 HOH HOH . H 5 HOH A 17 517 46 HOH HOH . H 5 HOH A 18 518 20 HOH HOH . H 5 HOH A 19 519 105 HOH HOH . H 5 HOH A 20 520 52 HOH HOH . H 5 HOH A 21 521 136 HOH HOH . H 5 HOH A 22 522 45 HOH HOH . H 5 HOH A 23 523 154 HOH HOH . H 5 HOH A 24 524 73 HOH HOH . H 5 HOH A 25 525 44 HOH HOH . H 5 HOH A 26 526 135 HOH HOH . H 5 HOH A 27 527 57 HOH HOH . H 5 HOH A 28 528 109 HOH HOH . H 5 HOH A 29 529 13 HOH HOH . H 5 HOH A 30 530 38 HOH HOH . H 5 HOH A 31 531 76 HOH HOH . H 5 HOH A 32 532 121 HOH HOH . H 5 HOH A 33 533 19 HOH HOH . H 5 HOH A 34 534 125 HOH HOH . H 5 HOH A 35 535 25 HOH HOH . H 5 HOH A 36 536 82 HOH HOH . H 5 HOH A 37 537 10 HOH HOH . H 5 HOH A 38 538 115 HOH HOH . H 5 HOH A 39 539 106 HOH HOH . H 5 HOH A 40 540 65 HOH HOH . H 5 HOH A 41 541 90 HOH HOH . H 5 HOH A 42 542 88 HOH HOH . H 5 HOH A 43 543 8 HOH HOH . H 5 HOH A 44 544 97 HOH HOH . H 5 HOH A 45 545 104 HOH HOH . H 5 HOH A 46 546 35 HOH HOH . H 5 HOH A 47 547 43 HOH HOH . H 5 HOH A 48 548 61 HOH HOH . H 5 HOH A 49 549 138 HOH HOH . H 5 HOH A 50 550 123 HOH HOH . H 5 HOH A 51 551 117 HOH HOH . H 5 HOH A 52 552 58 HOH HOH . H 5 HOH A 53 553 96 HOH HOH . H 5 HOH A 54 554 68 HOH HOH . H 5 HOH A 55 555 55 HOH HOH . H 5 HOH A 56 556 32 HOH HOH . H 5 HOH A 57 557 30 HOH HOH . H 5 HOH A 58 558 102 HOH HOH . H 5 HOH A 59 559 129 HOH HOH . H 5 HOH A 60 560 3 HOH HOH . H 5 HOH A 61 561 21 HOH HOH . H 5 HOH A 62 562 31 HOH HOH . H 5 HOH A 63 563 4 HOH HOH . H 5 HOH A 64 564 140 HOH HOH . H 5 HOH A 65 565 83 HOH HOH . H 5 HOH A 66 566 12 HOH HOH . H 5 HOH A 67 567 131 HOH HOH . H 5 HOH A 68 568 39 HOH HOH . H 5 HOH A 69 569 41 HOH HOH . H 5 HOH A 70 570 94 HOH HOH . H 5 HOH A 71 571 159 HOH HOH . H 5 HOH A 72 572 2 HOH HOH . H 5 HOH A 73 573 48 HOH HOH . H 5 HOH A 74 574 98 HOH HOH . H 5 HOH A 75 575 26 HOH HOH . H 5 HOH A 76 576 101 HOH HOH . H 5 HOH A 77 577 148 HOH HOH . H 5 HOH A 78 578 5 HOH HOH . H 5 HOH A 79 579 22 HOH HOH . H 5 HOH A 80 580 155 HOH HOH . H 5 HOH A 81 581 49 HOH HOH . H 5 HOH A 82 582 74 HOH HOH . H 5 HOH A 83 583 174 HOH HOH . H 5 HOH A 84 584 113 HOH HOH . H 5 HOH A 85 585 37 HOH HOH . H 5 HOH A 86 586 70 HOH HOH . H 5 HOH A 87 587 146 HOH HOH . H 5 HOH A 88 588 84 HOH HOH . H 5 HOH A 89 589 51 HOH HOH . H 5 HOH A 90 590 147 HOH HOH . H 5 HOH A 91 591 67 HOH HOH . H 5 HOH A 92 592 127 HOH HOH . H 5 HOH A 93 593 33 HOH HOH . H 5 HOH A 94 594 111 HOH HOH . H 5 HOH A 95 595 15 HOH HOH . H 5 HOH A 96 596 93 HOH HOH . H 5 HOH A 97 597 165 HOH HOH . H 5 HOH A 98 598 14 HOH HOH . H 5 HOH A 99 599 110 HOH HOH . H 5 HOH A 100 600 17 HOH HOH . H 5 HOH A 101 601 171 HOH HOH . H 5 HOH A 102 602 9 HOH HOH . H 5 HOH A 103 603 59 HOH HOH . H 5 HOH A 104 604 29 HOH HOH . H 5 HOH A 105 605 119 HOH HOH . H 5 HOH A 106 606 72 HOH HOH . H 5 HOH A 107 607 53 HOH HOH . H 5 HOH A 108 608 77 HOH HOH . H 5 HOH A 109 609 63 HOH HOH . H 5 HOH A 110 610 36 HOH HOH . H 5 HOH A 111 611 156 HOH HOH . H 5 HOH A 112 612 6 HOH HOH . H 5 HOH A 113 613 42 HOH HOH . H 5 HOH A 114 614 11 HOH HOH . H 5 HOH A 115 615 28 HOH HOH . H 5 HOH A 116 616 116 HOH HOH . H 5 HOH A 117 617 120 HOH HOH . H 5 HOH A 118 618 86 HOH HOH . H 5 HOH A 119 619 40 HOH HOH . H 5 HOH A 120 620 92 HOH HOH . H 5 HOH A 121 621 91 HOH HOH . H 5 HOH A 122 622 87 HOH HOH . H 5 HOH A 123 623 47 HOH HOH . H 5 HOH A 124 624 81 HOH HOH . H 5 HOH A 125 625 169 HOH HOH . H 5 HOH A 126 626 60 HOH HOH . H 5 HOH A 127 627 23 HOH HOH . H 5 HOH A 128 628 64 HOH HOH . H 5 HOH A 129 629 34 HOH HOH . H 5 HOH A 130 630 54 HOH HOH . H 5 HOH A 131 631 114 HOH HOH . H 5 HOH A 132 632 170 HOH HOH . H 5 HOH A 133 633 80 HOH HOH . H 5 HOH A 134 634 95 HOH HOH . H 5 HOH A 135 635 99 HOH HOH . H 5 HOH A 136 636 24 HOH HOH . H 5 HOH A 137 637 128 HOH HOH . H 5 HOH A 138 638 134 HOH HOH . H 5 HOH A 139 639 66 HOH HOH . H 5 HOH A 140 640 89 HOH HOH . H 5 HOH A 141 641 144 HOH HOH . H 5 HOH A 142 642 108 HOH HOH . H 5 HOH A 143 643 160 HOH HOH . H 5 HOH A 144 644 164 HOH HOH . H 5 HOH A 145 645 150 HOH HOH . H 5 HOH A 146 646 157 HOH HOH . H 5 HOH A 147 647 62 HOH HOH . H 5 HOH A 148 648 152 HOH HOH . H 5 HOH A 149 649 71 HOH HOH . H 5 HOH A 150 650 100 HOH HOH . H 5 HOH A 151 651 153 HOH HOH . H 5 HOH A 152 652 142 HOH HOH . H 5 HOH A 153 653 166 HOH HOH . H 5 HOH A 154 654 130 HOH HOH . H 5 HOH A 155 655 124 HOH HOH . H 5 HOH A 156 656 133 HOH HOH . H 5 HOH A 157 657 16 HOH HOH . H 5 HOH A 158 658 112 HOH HOH . H 5 HOH A 159 659 141 HOH HOH . H 5 HOH A 160 660 132 HOH HOH . H 5 HOH A 161 661 122 HOH HOH . H 5 HOH A 162 662 118 HOH HOH . H 5 HOH A 163 663 69 HOH HOH . H 5 HOH A 164 664 158 HOH HOH . H 5 HOH A 165 665 173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 120.307 -20.761 29.52 0.75 47.26 ? S DMS 403 A 1 HETATM 2 O O DMS . . . D 3 121.516 -20.513 30.381 0.75 41.5 ? O DMS 403 A 1 HETATM 3 C C1 DMS . . . D 3 118.902 -20.441 30.562 0.75 52.31 ? C1 DMS 403 A 1 HETATM 4 C C2 DMS . . . D 3 120.122 -22.524 29.465 0.75 45.48 ? C2 DMS 403 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #