data_7JYD
#
_model_server_result.job_id            BSAeUd11awQloG-KUvH1Uw 
_model_server_result.datetime_utc      '2024-11-23 08:59:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7jyd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    7JYD 
#
_exptl.entry_id    7JYD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              472.658 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '10-[(3aR,6R,6aR)-6-hydroxy-3-phenyl-3a-(1-phenylethenyl)-1,3a,4,5,6,6a-hexahydropentalen-2-yl]decanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7JYD 
_cell.length_a            88.37 
_cell.length_b            88.37 
_cell.length_c            105.674 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7JYD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C32 H40 O3' 
_chem_comp.formula_weight    472.658 
_chem_comp.id                VQA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '10-[(3aR,6R,6aR)-6-hydroxy-3-phenyl-3a-(1-phenylethenyl)-1,3a,4,5,6,6a-hexahydropentalen-2-yl]decanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C34 C35 VQA doub 376 n y 
C34 C33 VQA sing 377 n y 
C35 C30 VQA sing 378 n y 
C33 C32 VQA doub 379 n y 
C03 C04 VQA sing 380 n n 
C03 C02 VQA sing 381 n n 
C04 C05 VQA sing 382 n n 
C30 C29 VQA sing 383 n n 
C30 C31 VQA doub 384 n y 
C02 O01 VQA sing 385 n n 
C02 C14 VQA sing 386 n n 
C16 C17 VQA sing 387 n n 
C16 C29 VQA doub 388 n n 
C16 C15 VQA sing 389 n n 
C17 C18 VQA sing 390 n n 
C32 C31 VQA sing 391 n y 
C29 C05 VQA sing 392 n n 
C15 C14 VQA sing 393 n n 
C05 C14 VQA sing 394 n n 
C05 C06 VQA sing 395 n n 
C18 C19 VQA sing 396 n n 
C19 C20 VQA sing 397 n n 
C13 C06 VQA doub 398 n n 
C06 C07 VQA sing 399 n n 
C20 C21 VQA sing 400 n n 
C07 C08 VQA doub 401 n y 
C07 C12 VQA sing 402 n y 
C08 C09 VQA sing 403 n y 
C21 C22 VQA sing 404 n n 
C12 C11 VQA doub 405 n y 
C22 C23 VQA sing 406 n n 
C09 C10 VQA doub 407 n y 
C11 C10 VQA sing 408 n y 
C23 C24 VQA sing 409 n n 
C24 C25 VQA sing 410 n n 
O27 C26 VQA doub 411 n n 
C25 C26 VQA sing 412 n n 
C26 O28 VQA sing 413 n n 
C10 H101 VQA sing 414 n n 
C11 H111 VQA sing 415 n n 
C12 H121 VQA sing 416 n n 
C13 H132 VQA sing 417 n n 
C13 H131 VQA sing 418 n n 
C14 H141 VQA sing 419 n n 
C15 H152 VQA sing 420 n n 
C15 H151 VQA sing 421 n n 
C17 H171 VQA sing 422 n n 
C17 H172 VQA sing 423 n n 
C18 H182 VQA sing 424 n n 
C18 H181 VQA sing 425 n n 
C19 H191 VQA sing 426 n n 
C19 H192 VQA sing 427 n n 
C20 H201 VQA sing 428 n n 
C20 H202 VQA sing 429 n n 
C21 H212 VQA sing 430 n n 
C21 H211 VQA sing 431 n n 
C22 H221 VQA sing 432 n n 
C22 H222 VQA sing 433 n n 
C02 H021 VQA sing 434 n n 
C03 H032 VQA sing 435 n n 
C03 H031 VQA sing 436 n n 
C04 H041 VQA sing 437 n n 
C04 H042 VQA sing 438 n n 
C08 H081 VQA sing 439 n n 
C09 H091 VQA sing 440 n n 
C23 H232 VQA sing 441 n n 
C23 H231 VQA sing 442 n n 
C24 H241 VQA sing 443 n n 
C24 H242 VQA sing 444 n n 
C25 H251 VQA sing 445 n n 
C25 H252 VQA sing 446 n n 
C31 H311 VQA sing 447 n n 
C32 H321 VQA sing 448 n n 
C33 H331 VQA sing 449 n n 
C34 H341 VQA sing 450 n n 
C35 H351 VQA sing 451 n n 
O01 H011 VQA sing 452 n n 
O28 H5 VQA sing 453 n n 
#
_atom_sites.entry_id                     7JYD 
_atom_sites.fract_transf_matrix[1][1]    0.011316 
_atom_sites.fract_transf_matrix[1][2]    0.006533 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013067 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009463 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 VQA A 1 601 601 VQA 10A . 
D 4 HOH A 1 701 21 HOH HOH . 
D 4 HOH A 2 702 19 HOH HOH . 
D 4 HOH A 3 703 33 HOH HOH . 
D 4 HOH A 4 704 32 HOH HOH . 
D 4 HOH A 5 705 15 HOH HOH . 
D 4 HOH A 6 706 4 HOH HOH . 
D 4 HOH A 7 707 3 HOH HOH . 
D 4 HOH A 8 708 29 HOH HOH . 
D 4 HOH A 9 709 11 HOH HOH . 
D 4 HOH A 10 710 16 HOH HOH . 
D 4 HOH A 11 711 27 HOH HOH . 
D 4 HOH A 12 712 6 HOH HOH . 
D 4 HOH A 13 713 14 HOH HOH . 
D 4 HOH A 14 714 12 HOH HOH . 
D 4 HOH A 15 715 30 HOH HOH . 
D 4 HOH A 16 716 24 HOH HOH . 
D 4 HOH A 17 717 2 HOH HOH . 
D 4 HOH A 18 718 10 HOH HOH . 
D 4 HOH A 19 719 13 HOH HOH . 
D 4 HOH A 20 720 5 HOH HOH . 
D 4 HOH A 21 721 31 HOH HOH . 
D 4 HOH A 22 722 1 HOH HOH . 
D 4 HOH A 23 723 7 HOH HOH . 
D 4 HOH A 24 724 9 HOH HOH . 
D 4 HOH A 25 725 26 HOH HOH . 
D 4 HOH A 26 726 22 HOH HOH . 
D 4 HOH A 27 727 8 HOH HOH . 
D 4 HOH A 28 728 34 HOH HOH . 
D 4 HOH A 29 729 23 HOH HOH . 
D 4 HOH A 30 730 20 HOH HOH . 
D 4 HOH A 31 731 17 HOH HOH . 
D 4 HOH A 32 732 28 HOH HOH . 
D 4 HOH A 33 733 25 HOH HOH . 
D 4 HOH A 34 734 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 VQA . . . C 3 38.181 -7.732 -0.324 1 61.25 ? C10 VQA 601 A 1 
HETATM 2 C C11 VQA . . . C 3 36.788 -8.327 -0.506 1 60.18 ? C11 VQA 601 A 1 
HETATM 3 C C12 VQA . . . C 3 36.511 -9.046 -1.574 1 53.63 ? C12 VQA 601 A 1 
HETATM 4 C C13 VQA . . . C 3 37.813 -11.549 -3.882 1 58.32 ? C13 VQA 601 A 1 
HETATM 5 C C14 VQA . . . C 3 36.555 -8.074 -5.079 1 51.24 ? C14 VQA 601 A 1 
HETATM 6 C C15 VQA . . . C 3 37.549 -6.843 -5.397 1 50.38 ? C15 VQA 601 A 1 
HETATM 7 C C16 VQA . . . C 3 38.672 -7.676 -6.048 1 46.33 ? C16 VQA 601 A 1 
HETATM 8 C C17 VQA . . . C 3 40.034 -6.991 -5.961 1 61.96 ? C17 VQA 601 A 1 
HETATM 9 C C18 VQA . . . C 3 40.404 -6.757 -4.498 1 78.67 ? C18 VQA 601 A 1 
HETATM 10 C C19 VQA . . . C 3 41.356 -5.57 -4.405 1 72.12 ? C19 VQA 601 A 1 
HETATM 11 C C20 VQA . . . C 3 41.158 -4.88 -3.056 1 71.25 ? C20 VQA 601 A 1 
HETATM 12 C C21 VQA . . . C 3 42.345 -5.185 -2.151 1 68.79 ? C21 VQA 601 A 1 
HETATM 13 C C22 VQA . . . C 3 42.63 -3.977 -1.261 1 67.37 ? C22 VQA 601 A 1 
HETATM 14 C C02 VQA . . . C 3 35.503 -8.072 -6.088 1 57.34 ? C02 VQA 601 A 1 
HETATM 15 C C03 VQA . . . C 3 35.751 -9.276 -7.037 1 59.59 ? C03 VQA 601 A 1 
HETATM 16 C C04 VQA . . . C 3 36.765 -10.233 -6.342 1 53.92 ? C04 VQA 601 A 1 
HETATM 17 C C05 VQA . . . C 3 37.362 -9.361 -5.189 1 50.91 ? C05 VQA 601 A 1 
HETATM 18 C C06 VQA . . . C 3 37.249 -10.132 -3.869 1 55.62 ? C06 VQA 601 A 1 
HETATM 19 C C07 VQA . . . C 3 37.585 -9.294 -2.631 1 53.61 ? C07 VQA 601 A 1 
HETATM 20 C C08 VQA . . . C 3 38.788 -8.783 -2.466 1 49.37 ? C08 VQA 601 A 1 
HETATM 21 C C09 VQA . . . C 3 39.107 -7.943 -1.234 1 57.61 ? C09 VQA 601 A 1 
HETATM 22 C C23 VQA . . . C 3 42.522 -4.362 0.217 1 69.89 ? C23 VQA 601 A 1 
HETATM 23 C C24 VQA . . . C 3 43.578 -5.41 0.585 1 69.16 ? C24 VQA 601 A 1 
HETATM 24 C C25 VQA . . . C 3 43.805 -5.415 2.099 1 72.26 ? C25 VQA 601 A 1 
HETATM 25 C C26 VQA . . . C 3 44.372 -6.757 2.577 1 70.99 ? C26 VQA 601 A 1 
HETATM 26 C C29 VQA . . . C 3 38.716 -8.984 -5.54 1 43.44 ? C29 VQA 601 A 1 
HETATM 27 C C30 VQA . . . C 3 39.763 -9.949 -6.102 1 48.29 ? C30 VQA 601 A 1 
HETATM 28 C C31 VQA . . . C 3 40.606 -10.789 -5.152 1 54.5 ? C31 VQA 601 A 1 
HETATM 29 C C32 VQA . . . C 3 41.501 -11.623 -5.633 1 52.4 ? C32 VQA 601 A 1 
HETATM 30 C C33 VQA . . . C 3 41.69 -11.754 -7.142 1 50.73 ? C33 VQA 601 A 1 
HETATM 31 C C34 VQA . . . C 3 40.961 -11.028 -7.963 1 48.12 ? C34 VQA 601 A 1 
HETATM 32 C C35 VQA . . . C 3 39.927 -10.06 -7.404 1 49.33 ? C35 VQA 601 A 1 
HETATM 33 O O01 VQA . . . C 3 34.221 -8.192 -5.505 1 62.44 ? O01 VQA 601 A 1 
HETATM 34 O O27 VQA . . . C 3 45.334 -7.304 1.971 1 56.94 ? O27 VQA 601 A 1 
HETATM 35 O O28 VQA . . . C 3 43.879 -7.316 3.595 1 69.26 ? O28 VQA 601 A 1 
HETATM 36 H H101 VQA . . . C 3 38.375 -7.222 0.429 1 73.61 ? H101 VQA 601 A 1 
HETATM 37 H H111 VQA . . . C 3 36.133 -8.182 0.138 1 72.33 ? H111 VQA 601 A 1 
HETATM 38 H H121 VQA . . . C 3 35.659 -9.403 -1.685 1 64.47 ? H121 VQA 601 A 1 
HETATM 39 H H132 VQA . . . C 3 37.113 -12.174 -3.732 1 70.09 ? H132 VQA 601 A 1 
HETATM 40 H H131 VQA . . . C 3 38.47 -11.638 -3.2 1 70.09 ? H131 VQA 601 A 1 
HETATM 41 H H141 VQA . . . C 3 36.193 -8.009 -4.215 1 61.6 ? H141 VQA 601 A 1 
HETATM 42 H H152 VQA . . . C 3 37.169 -6.235 -6.004 1 60.57 ? H152 VQA 601 A 1 
HETATM 43 H H151 VQA . . . C 3 37.84 -6.417 -4.612 1 60.57 ? H151 VQA 601 A 1 
HETATM 44 H H171 VQA . . . C 3 39.997 -6.167 -6.409 1 74.46 ? H171 VQA 601 A 1 
HETATM 45 H H172 VQA . . . C 3 40.684 -7.538 -6.363 1 74.46 ? H172 VQA 601 A 1 
HETATM 46 H H182 VQA . . . C 3 40.823 -7.523 -4.153 1 94.51 ? H182 VQA 601 A 1 
HETATM 47 H H181 VQA . . . C 3 39.627 -6.575 -4.003 1 94.51 ? H181 VQA 601 A 1 
HETATM 48 H H191 VQA . . . C 3 41.174 -4.965 -5.099 1 86.65 ? H191 VQA 601 A 1 
HETATM 49 H H192 VQA . . . C 3 42.243 -5.871 -4.478 1 86.65 ? H192 VQA 601 A 1 
HETATM 50 H H201 VQA . . . C 3 40.369 -5.197 -2.655 1 85.61 ? H201 VQA 601 A 1 
HETATM 51 H H202 VQA . . . C 3 41.092 -3.953 -3.185 1 85.61 ? H202 VQA 601 A 1 
HETATM 52 H H212 VQA . . . C 3 43.1 -5.371 -2.677 1 82.66 ? H212 VQA 601 A 1 
HETATM 53 H H211 VQA . . . C 3 42.147 -5.93 -1.614 1 82.66 ? H211 VQA 601 A 1 
HETATM 54 H H221 VQA . . . C 3 42.008 -3.3 -1.451 1 80.96 ? H221 VQA 601 A 1 
HETATM 55 H H222 VQA . . . C 3 43.498 -3.663 -1.436 1 80.96 ? H222 VQA 601 A 1 
HETATM 56 H H021 VQA . . . C 3 35.536 -7.26 -6.558 1 68.91 ? H021 VQA 601 A 1 
HETATM 57 H H032 VQA . . . C 3 34.943 -9.729 -7.192 1 71.62 ? H032 VQA 601 A 1 
HETATM 58 H H031 VQA . . . C 3 36.109 -8.971 -7.85 1 71.62 ? H031 VQA 601 A 1 
HETATM 59 H H041 VQA . . . C 3 37.438 -10.492 -6.942 1 64.81 ? H041 VQA 601 A 1 
HETATM 60 H H042 VQA . . . C 3 36.322 -10.984 -5.992 1 64.81 ? H042 VQA 601 A 1 
HETATM 61 H H081 VQA . . . C 3 39.446 -8.936 -3.105 1 59.35 ? H081 VQA 601 A 1 
HETATM 62 H H091 VQA . . . C 3 39.957 -7.581 -1.126 1 69.24 ? H091 VQA 601 A 1 
HETATM 63 H H232 VQA . . . C 3 41.667 -4.715 0.382 1 83.98 ? H232 VQA 601 A 1 
HETATM 64 H H231 VQA . . . C 3 42.651 -3.596 0.745 1 83.98 ? H231 VQA 601 A 1 
HETATM 65 H H241 VQA . . . C 3 44.384 -5.204 0.15 1 83.1 ? H241 VQA 601 A 1 
HETATM 66 H H242 VQA . . . C 3 43.283 -6.258 0.311 1 83.1 ? H242 VQA 601 A 1 
HETATM 67 H H251 VQA . . . C 3 42.986 -5.258 2.531 1 86.82 ? H251 VQA 601 A 1 
HETATM 68 H H252 VQA . . . C 3 44.411 -4.732 2.319 1 86.82 ? H252 VQA 601 A 1 
HETATM 69 H H311 VQA . . . C 3 40.489 -10.712 -4.232 1 65.51 ? H311 VQA 601 A 1 
HETATM 70 H H321 VQA . . . C 3 42.019 -12.134 -5.054 1 62.98 ? H321 VQA 601 A 1 
HETATM 71 H H331 VQA . . . C 3 42.321 -12.347 -7.482 1 60.99 ? H331 VQA 601 A 1 
HETATM 72 H H341 VQA . . . C 3 41.078 -11.105 -8.883 1 57.85 ? H341 VQA 601 A 1 
HETATM 73 H H351 VQA . . . C 3 39.411 -9.547 -7.982 1 59.3 ? H351 VQA 601 A 1 
HETATM 74 H H011 VQA . . . C 3 33.736 -7.578 -5.804 1 75.04 ? H011 VQA 601 A 1 
#
_model_server_stats.io_time_ms              42 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           219 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           74 
#