data_7JYE # _model_server_result.job_id m0bNoHuvvAsKLtEGZRpGkA _model_server_result.datetime_utc '2025-08-30 23:32:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jye # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 7JYE # _exptl.entry_id 7JYE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 610.783 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '9-[(3~{a}~{R},6~{R},6~{a}~{R})-6-oxidanyl-3-phenyl-3~{a}-(1-phenylethenyl)-4,5,6,6~{a}-tetrahydro-1~{H}-pentalen-2-yl]nonyl 2-(trimethyl-$l^{4}-azanyl)ethyl hydrogen phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JYE _cell.length_a 89.24 _cell.length_b 89.24 _cell.length_c 106.537 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JYE _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C36 H53 N O5 P 1' _chem_comp.formula_weight 610.783 _chem_comp.id VQY _chem_comp.mon_nstd_flag . _chem_comp.name '9-[(3~{a}~{R},6~{R},6~{a}~{R})-6-oxidanyl-3-phenyl-3~{a}-(1-phenylethenyl)-4,5,6,6~{a}-tetrahydro-1~{H}-pentalen-2-yl]nonyl 2-(trimethyl-$l^{4}-azanyl)ethyl hydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C21 VQY doub 376 n y C20 C19 VQY sing 377 n y C21 C16 VQY sing 378 n y C19 C18 VQY doub 379 n y C04 C02 VQY sing 380 n n C04 C05 VQY sing 381 n n C02 O03 VQY sing 382 n n C02 C01 VQY sing 383 n n C16 C15 VQY sing 384 n n C16 C17 VQY doub 385 n y C05 C06 VQY sing 386 n n C23 C22 VQY sing 387 n n C23 C24 VQY sing 388 n n C15 C22 VQY doub 389 n n C15 C06 VQY sing 390 n n C22 C43 VQY sing 391 n n C18 C17 VQY sing 392 n y C06 C01 VQY sing 393 n n C06 C07 VQY sing 394 n n C01 C43 VQY sing 395 n n C24 C25 VQY sing 396 n n C25 C26 VQY sing 397 n n C07 C14 VQY doub 398 n n C07 C08 VQY sing 399 n n C26 C27 VQY sing 400 n n C08 C09 VQY doub 401 n y C08 C13 VQY sing 402 n y C27 C28 VQY sing 403 n n C09 C10 VQY sing 404 n y C13 C12 VQY doub 405 n y C10 C11 VQY doub 406 n y C28 C29 VQY sing 407 n n C12 C11 VQY sing 408 n y C29 C30 VQY sing 409 n n C30 C31 VQY sing 410 n n C31 O32 VQY sing 411 n n O41 P33 VQY doub 412 n n O32 P33 VQY sing 413 n n P33 O34 VQY sing 414 n n P33 O42 VQY sing 415 n n O34 C35 VQY sing 416 n n C35 C36 VQY sing 417 n n C39 N37 VQY sing 418 n n C36 N37 VQY sing 419 n n N37 C38 VQY sing 420 n n N37 C40 VQY sing 421 n n C11 H111 VQY sing 422 n n C12 H121 VQY sing 423 n n C13 H131 VQY sing 424 n n C10 H101 VQY sing 425 n n C01 H011 VQY sing 426 n n C02 H021 VQY sing 427 n n C04 H042 VQY sing 428 n n C04 H041 VQY sing 429 n n C05 H051 VQY sing 430 n n C05 H052 VQY sing 431 n n C09 H091 VQY sing 432 n n C14 H142 VQY sing 433 n n C14 H141 VQY sing 434 n n C17 H171 VQY sing 435 n n C18 H181 VQY sing 436 n n C19 H191 VQY sing 437 n n C20 H201 VQY sing 438 n n C21 H211 VQY sing 439 n n C23 H232 VQY sing 440 n n C23 H231 VQY sing 441 n n C24 H241 VQY sing 442 n n C24 H242 VQY sing 443 n n C25 H251 VQY sing 444 n n C25 H252 VQY sing 445 n n C26 H261 VQY sing 446 n n C26 H262 VQY sing 447 n n C27 H272 VQY sing 448 n n C27 H271 VQY sing 449 n n C28 H281 VQY sing 450 n n C28 H282 VQY sing 451 n n C29 H292 VQY sing 452 n n C29 H291 VQY sing 453 n n C30 H302 VQY sing 454 n n C30 H301 VQY sing 455 n n C31 H311 VQY sing 456 n n C31 H312 VQY sing 457 n n C35 H351 VQY sing 458 n n C35 H352 VQY sing 459 n n C36 H361 VQY sing 460 n n C36 H362 VQY sing 461 n n C38 H382 VQY sing 462 n n C38 H383 VQY sing 463 n n C38 H381 VQY sing 464 n n C39 H393 VQY sing 465 n n C39 H392 VQY sing 466 n n C39 H391 VQY sing 467 n n C40 H401 VQY sing 468 n n C40 H403 VQY sing 469 n n C40 H402 VQY sing 470 n n C43 H432 VQY sing 471 n n C43 H431 VQY sing 472 n n O03 H031 VQY sing 473 n n O42 H1 VQY sing 474 n n # _atom_sites.entry_id 7JYE _atom_sites.fract_transf_matrix[1][1] 0.011206 _atom_sites.fract_transf_matrix[1][2] 0.00647 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VQY A 1 601 1 VQY 9PC . D 4 HOH A 1 701 17 HOH HOH . D 4 HOH A 2 702 2 HOH HOH . D 4 HOH A 3 703 27 HOH HOH . D 4 HOH A 4 704 3 HOH HOH . D 4 HOH A 5 705 19 HOH HOH . D 4 HOH A 6 706 25 HOH HOH . D 4 HOH A 7 707 33 HOH HOH . D 4 HOH A 8 708 9 HOH HOH . D 4 HOH A 9 709 4 HOH HOH . D 4 HOH A 10 710 37 HOH HOH . D 4 HOH A 11 711 8 HOH HOH . D 4 HOH A 12 712 34 HOH HOH . D 4 HOH A 13 713 24 HOH HOH . D 4 HOH A 14 714 36 HOH HOH . D 4 HOH A 15 715 30 HOH HOH . D 4 HOH A 16 716 32 HOH HOH . D 4 HOH A 17 717 11 HOH HOH . E 4 HOH C 1 801 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 VQY . . . C 3 -32.626 40.418 17.403 1 59.16 ? C11 VQY 601 A 1 HETATM 2 C C12 VQY . . . C 3 -33.758 41.121 17.134 1 66.27 ? C12 VQY 601 A 1 HETATM 3 C C13 VQY . . . C 3 -34.507 40.831 16.013 1 66.27 ? C13 VQY 601 A 1 HETATM 4 C C10 VQY . . . C 3 -32.217 39.393 16.535 1 51.41 ? C10 VQY 601 A 1 HETATM 5 C C01 VQY . . . C 3 -33.702 41.257 12.613 1 60.03 ? C01 VQY 601 A 1 HETATM 6 C C02 VQY . . . C 3 -33.93 42.036 11.309 1 63.14 ? C02 VQY 601 A 1 HETATM 7 C C04 VQY . . . C 3 -35.253 41.493 10.74 1 60.07 ? C04 VQY 601 A 1 HETATM 8 C C05 VQY . . . C 3 -35.614 40.274 11.568 1 49.53 ? C05 VQY 601 A 1 HETATM 9 C C06 VQY . . . C 3 -34.397 39.974 12.477 1 50.54 ? C06 VQY 601 A 1 HETATM 10 C C07 VQY . . . C 3 -34.893 39.465 13.909 1 52.76 ? C07 VQY 601 A 1 HETATM 11 C C08 VQY . . . C 3 -34.101 39.807 15.145 1 64.93 ? C08 VQY 601 A 1 HETATM 12 C C09 VQY . . . C 3 -32.962 39.101 15.417 1 64.64 ? C09 VQY 601 A 1 HETATM 13 C C14 VQY . . . C 3 -35.971 38.728 14.015 1 50.96 ? C14 VQY 601 A 1 HETATM 14 C C15 VQY . . . C 3 -33.32 38.935 11.941 1 49.16 ? C15 VQY 601 A 1 HETATM 15 C C16 VQY . . . C 3 -33.592 37.489 11.526 1 49.36 ? C16 VQY 601 A 1 HETATM 16 C C17 VQY . . . C 3 -33.462 36.445 12.456 1 42.31 ? C17 VQY 601 A 1 HETATM 17 C C18 VQY . . . C 3 -33.707 35.16 12.076 1 48.77 ? C18 VQY 601 A 1 HETATM 18 C C19 VQY . . . C 3 -34.093 34.876 10.734 1 61.82 ? C19 VQY 601 A 1 HETATM 19 C C20 VQY . . . C 3 -34.22 35.923 9.807 1 65.9 ? C20 VQY 601 A 1 HETATM 20 C C21 VQY . . . C 3 -33.974 37.21 10.193 1 63.02 ? C21 VQY 601 A 1 HETATM 21 C C22 VQY . . . C 3 -32.038 39.578 11.947 1 49.33 ? C22 VQY 601 A 1 HETATM 22 C C23 VQY . . . C 3 -30.633 38.839 11.666 1 49.84 ? C23 VQY 601 A 1 HETATM 23 C C24 VQY . . . C 3 -29.552 39.311 12.631 1 61.72 ? C24 VQY 601 A 1 HETATM 24 C C25 VQY . . . C 3 -29.147 38.184 13.687 1 68.47 ? C25 VQY 601 A 1 HETATM 25 C C26 VQY . . . C 3 -28.291 38.748 14.864 1 74.23 ? C26 VQY 601 A 1 HETATM 26 C C27 VQY . . . C 3 -27.099 37.845 15.186 1 82.71 ? C27 VQY 601 A 1 HETATM 27 C C28 VQY . . . C 3 -26.398 38.141 16.582 1 83.88 ? C28 VQY 601 A 1 HETATM 28 C C29 VQY . . . C 3 -27.415 38.485 17.756 1 67.83 ? C29 VQY 601 A 1 HETATM 29 C C30 VQY . . . C 3 -27.039 37.754 19.125 1 62.45 ? C30 VQY 601 A 1 HETATM 30 C C31 VQY . . . C 3 -28.311 37.183 19.842 1 63.91 ? C31 VQY 601 A 1 HETATM 31 C C35 VQY . . . C 3 -25.831 34.947 22.325 1 83.13 ? C35 VQY 601 A 1 HETATM 32 C C36 VQY . . . C 3 -25.558 34.789 23.842 1 88.77 ? C36 VQY 601 A 1 HETATM 33 C C38 VQY . . . C 3 -27.06 33.052 24.597 1 93.89 ? C38 VQY 601 A 1 HETATM 34 C C39 VQY . . . C 3 -25.115 32.475 23.296 1 95.4 ? C39 VQY 601 A 1 HETATM 35 C C40 VQY . . . C 3 -24.854 33.248 25.545 1 103.52 ? C40 VQY 601 A 1 HETATM 36 C C43 VQY . . . C 3 -32.203 40.925 12.623 1 55.31 ? C43 VQY 601 A 1 HETATM 37 N N37 VQY . . . C 3 -25.647 33.388 24.305 1 93.67 ? N37 VQY 601 A 1 HETATM 38 O O03 VQY . . . C 3 -34.03 43.369 11.565 1 74.27 ? O03 VQY 601 A 1 HETATM 39 O O32 VQY . . . C 3 -27.919 36.535 21.016 1 57.55 ? O32 VQY 601 A 1 HETATM 40 O O34 VQY . . . C 3 -26.968 34.15 21.949 1 70.19 ? O34 VQY 601 A 1 HETATM 41 O O41 VQY . . . C 3 -28.566 34.266 19.862 1 49.5 -1 O41 VQY 601 A 1 HETATM 42 O O42 VQY . . . C 3 -29.502 34.782 22.093 1 65 ? O42 VQY 601 A 1 HETATM 43 P P33 VQY . . . C 3 -28.287 34.914 21.211 1 58.67 ? P33 VQY 601 A 1 HETATM 44 H H111 VQY . . . C 3 -32.123 40.617 18.159 1 71 ? H111 VQY 601 A 1 HETATM 45 H H121 VQY . . . C 3 -34.028 41.8 17.708 1 79.53 ? H121 VQY 601 A 1 HETATM 46 H H131 VQY . . . C 3 -35.281 41.314 15.833 1 79.52 ? H131 VQY 601 A 1 HETATM 47 H H101 VQY . . . C 3 -31.443 38.911 16.718 1 61.7 ? H101 VQY 601 A 1 HETATM 48 H H011 VQY . . . C 3 -33.997 41.749 13.396 1 72.04 ? H011 VQY 601 A 1 HETATM 49 H H021 VQY . . . C 3 -33.204 41.88 10.685 1 75.77 ? H021 VQY 601 A 1 HETATM 50 H H042 VQY . . . C 3 -35.135 41.239 9.811 1 72.09 ? H042 VQY 601 A 1 HETATM 51 H H041 VQY . . . C 3 -35.948 42.165 10.82 1 72.09 ? H041 VQY 601 A 1 HETATM 52 H H051 VQY . . . C 3 -35.784 39.518 10.985 1 59.44 ? H051 VQY 601 A 1 HETATM 53 H H052 VQY . . . C 3 -36.394 40.463 12.112 1 59.44 ? H052 VQY 601 A 1 HETATM 54 H H091 VQY . . . C 3 -32.691 38.42 14.845 1 77.57 ? H091 VQY 601 A 1 HETATM 55 H H142 VQY . . . C 3 -36.456 38.504 13.253 1 61.15 ? H142 VQY 601 A 1 HETATM 56 H H141 VQY . . . C 3 -36.249 38.431 14.851 1 61.15 ? H141 VQY 601 A 1 HETATM 57 H H171 VQY . . . C 3 -33.208 36.632 13.331 1 50.78 ? H171 VQY 601 A 1 HETATM 58 H H181 VQY . . . C 3 -33.623 34.469 12.693 1 58.52 ? H181 VQY 601 A 1 HETATM 59 H H191 VQY . . . C 3 -34.261 34 10.472 1 74.19 ? H191 VQY 601 A 1 HETATM 60 H H201 VQY . . . C 3 -34.472 35.741 8.93 1 79.08 ? H201 VQY 601 A 1 HETATM 61 H H211 VQY . . . C 3 -34.056 37.904 9.579 1 75.63 ? H211 VQY 601 A 1 HETATM 62 H H232 VQY . . . C 3 -30.351 39.028 10.757 1 59.8 ? H232 VQY 601 A 1 HETATM 63 H H231 VQY . . . C 3 -30.752 37.882 11.766 1 59.8 ? H231 VQY 601 A 1 HETATM 64 H H241 VQY . . . C 3 -29.877 40.089 13.111 1 74.07 ? H241 VQY 601 A 1 HETATM 65 H H242 VQY . . . C 3 -28.765 39.562 12.123 1 74.07 ? H242 VQY 601 A 1 HETATM 66 H H251 VQY . . . C 3 -28.637 37.496 13.23 1 82.16 ? H251 VQY 601 A 1 HETATM 67 H H252 VQY . . . C 3 -29.955 37.789 14.048 1 82.16 ? H252 VQY 601 A 1 HETATM 68 H H261 VQY . . . C 3 -28.852 38.824 15.652 1 89.08 ? H261 VQY 601 A 1 HETATM 69 H H262 VQY . . . C 3 -27.965 39.629 14.622 1 89.08 ? H262 VQY 601 A 1 HETATM 70 H H272 VQY . . . C 3 -26.437 37.954 14.485 1 99.25 ? H272 VQY 601 A 1 HETATM 71 H H271 VQY . . . C 3 -27.406 36.925 15.189 1 99.25 ? H271 VQY 601 A 1 HETATM 72 H H281 VQY . . . C 3 -25.793 38.891 16.47 1 100.65 ? H281 VQY 601 A 1 HETATM 73 H H282 VQY . . . C 3 -25.885 37.359 16.84 1 100.65 ? H282 VQY 601 A 1 HETATM 74 H H292 VQY . . . C 3 -28.306 38.211 17.491 1 81.39 ? H292 VQY 601 A 1 HETATM 75 H H291 VQY . . . C 3 -27.411 39.444 17.904 1 81.39 ? H291 VQY 601 A 1 HETATM 76 H H302 VQY . . . C 3 -26.602 38.389 19.714 1 74.95 ? H302 VQY 601 A 1 HETATM 77 H H301 VQY . . . C 3 -26.428 37.025 18.937 1 74.95 ? H301 VQY 601 A 1 HETATM 78 H H311 VQY . . . C 3 -28.757 36.551 19.256 1 76.69 ? H311 VQY 601 A 1 HETATM 79 H H312 VQY . . . C 3 -28.914 37.911 20.06 1 76.69 ? H312 VQY 601 A 1 HETATM 80 H H351 VQY . . . C 3 -26.012 35.879 22.128 1 99.75 ? H351 VQY 601 A 1 HETATM 81 H H352 VQY . . . C 3 -25.052 34.653 21.827 1 99.75 ? H352 VQY 601 A 1 HETATM 82 H H361 VQY . . . C 3 -26.209 35.317 24.33 1 106.52 ? H361 VQY 601 A 1 HETATM 83 H H362 VQY . . . C 3 -24.667 35.121 24.033 1 106.52 ? H362 VQY 601 A 1 HETATM 84 H H382 VQY . . . C 3 -27.45 32.603 23.83 1 112.66 ? H382 VQY 601 A 1 HETATM 85 H H383 VQY . . . C 3 -27.554 33.866 24.781 1 112.66 ? H383 VQY 601 A 1 HETATM 86 H H381 VQY . . . C 3 -27.1 32.467 25.369 1 112.66 ? H381 VQY 601 A 1 HETATM 87 H H393 VQY . . . C 3 -25.767 32.36 22.587 1 114.48 ? H393 VQY 601 A 1 HETATM 88 H H392 VQY . . . C 3 -24.926 31.616 23.703 1 114.48 ? H392 VQY 601 A 1 HETATM 89 H H391 VQY . . . C 3 -24.298 32.842 22.924 1 114.48 ? H391 VQY 601 A 1 HETATM 90 H H401 VQY . . . C 3 -24.077 33.826 25.5 1 124.23 ? H401 VQY 601 A 1 HETATM 91 H H403 VQY . . . C 3 -24.567 32.327 25.643 1 124.23 ? H403 VQY 601 A 1 HETATM 92 H H402 VQY . . . C 3 -25.399 33.499 26.308 1 124.23 ? H402 VQY 601 A 1 HETATM 93 H H432 VQY . . . C 3 -31.714 41.602 12.13 1 66.37 ? H432 VQY 601 A 1 HETATM 94 H H431 VQY . . . C 3 -31.885 40.875 13.538 1 66.37 ? H431 VQY 601 A 1 HETATM 95 H H031 VQY . . . C 3 -34.458 43.746 10.935 1 89.13 ? H031 VQY 601 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 397 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 95 #