data_7JYM # _model_server_result.job_id At3hYLl5xAoUA4a5sUQYdg _model_server_result.datetime_utc '2024-10-10 16:26:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jym # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":4000}' # _entry.id 7JYM # _exptl.entry_id 7JYM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 700.612 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R,5S)-3-fluoro-5-[(3aR,9bR)-9b-[(4-fluorophenyl)sulfonyl]-7-(1,1,1,2,3,3,3-heptafluoropropan-2-yl)-1,2,3a,4,5,9b-hexahydro-3H-benzo[e]indole-3-carbonyl]-1-(2-hydroxy-2-methylpropyl)pyrrolidin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JYM _cell.length_a 61.297 _cell.length_b 61.297 _cell.length_c 155.945 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JYM _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H29 F9 N2 O5 S' _chem_comp.formula_weight 700.612 _chem_comp.id Z8I _chem_comp.mon_nstd_flag . _chem_comp.name (3R,5S)-3-fluoro-5-[(3aR,9bR)-9b-[(4-fluorophenyl)sulfonyl]-7-(1,1,1,2,3,3,3-heptafluoropropan-2-yl)-1,2,3a,4,5,9b-hexahydro-3H-benzo[e]indole-3-carbonyl]-1-(2-hydroxy-2-methylpropyl)pyrrolidin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O45 C44 Z8I sing 376 n n C47 C44 Z8I sing 377 n n O22 S15 Z8I doub 378 n n C46 C44 Z8I sing 379 n n C44 C43 Z8I sing 380 n n O23 S15 Z8I doub 381 n n C1 C2 Z8I sing 382 n n C1 C5 Z8I sing 383 n n S15 C5 Z8I sing 384 n n S15 C16 Z8I sing 385 n n C13 C12 Z8I doub 386 n y C13 C9 Z8I sing 387 n y C2 N3 Z8I sing 388 n n F29 C25 Z8I sing 389 n n C43 N40 Z8I sing 390 n n C5 C9 Z8I sing 391 n n C5 C4 Z8I sing 392 n n C12 C11 Z8I sing 393 n y C20 C16 Z8I doub 394 n y C20 C19 Z8I sing 395 n y C16 C17 Z8I sing 396 n y C35 N40 Z8I sing 397 n n C35 C34 Z8I sing 398 n n C35 C37 Z8I sing 399 n n C9 C8 Z8I doub 400 n y N3 C34 Z8I sing 401 n n N3 C4 Z8I sing 402 n n N40 C39 Z8I sing 403 n n F32 C24 Z8I sing 404 n n C34 O36 Z8I doub 405 n n F28 C25 Z8I sing 406 n n C25 F27 Z8I sing 407 n n C25 C14 Z8I sing 408 n n C4 C6 Z8I sing 409 n n C19 C21 Z8I doub 410 n y C17 C18 Z8I doub 411 n y C37 C38 Z8I sing 412 n n C11 C14 Z8I sing 413 n n C11 C10 Z8I doub 414 n y C39 O41 Z8I doub 415 n n C39 C38 Z8I sing 416 n n C8 C10 Z8I sing 417 n y C8 C7 Z8I sing 418 n n C14 C24 Z8I sing 419 n n C14 F26 Z8I sing 420 n n C24 F31 Z8I sing 421 n n C24 F30 Z8I sing 422 n n C21 C18 Z8I sing 423 n y C21 F33 Z8I sing 424 n n C38 F42 Z8I sing 425 n n C6 C7 Z8I sing 426 n n C1 H49 Z8I sing 427 n n C1 H48 Z8I sing 428 n n C2 H50 Z8I sing 429 n n C2 H51 Z8I sing 430 n n C4 H52 Z8I sing 431 n n C6 H53 Z8I sing 432 n n C6 H54 Z8I sing 433 n n C7 H56 Z8I sing 434 n n C7 H55 Z8I sing 435 n n C10 H57 Z8I sing 436 n n C12 H58 Z8I sing 437 n n C13 H59 Z8I sing 438 n n C17 H60 Z8I sing 439 n n C18 H61 Z8I sing 440 n n C19 H62 Z8I sing 441 n n C20 H63 Z8I sing 442 n n C35 H64 Z8I sing 443 n n C37 H66 Z8I sing 444 n n C37 H65 Z8I sing 445 n n C38 H67 Z8I sing 446 n n C43 H69 Z8I sing 447 n n C43 H68 Z8I sing 448 n n O45 H70 Z8I sing 449 n n C46 H71 Z8I sing 450 n n C46 H73 Z8I sing 451 n n C46 H72 Z8I sing 452 n n C47 H75 Z8I sing 453 n n C47 H74 Z8I sing 454 n n C47 H76 Z8I sing 455 n n # _atom_sites.entry_id 7JYM _atom_sites.fract_transf_matrix[1][1] 0.016314 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016314 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006413 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Z8I A 1 4000 4000 Z8I Z8I . C 3 HOH A 1 4101 8 HOH HOH . C 3 HOH A 2 4102 6 HOH HOH . C 3 HOH A 3 4103 5 HOH HOH . C 3 HOH A 4 4104 7 HOH HOH . C 3 HOH A 5 4105 1 HOH HOH . C 3 HOH A 6 4106 2 HOH HOH . C 3 HOH A 7 4107 3 HOH HOH . C 3 HOH A 8 4108 4 HOH HOH . C 3 HOH A 9 4109 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 Z8I . . . B 2 -23.407 -5.069 -26.155 1 50.49 ? C1 Z8I 4000 A 1 HETATM 2 C C2 Z8I . . . B 2 -23.034 -3.707 -25.562 1 49.94 ? C2 Z8I 4000 A 1 HETATM 3 N N3 Z8I . . . B 2 -24.164 -3.383 -24.669 1 49.61 ? N3 Z8I 4000 A 1 HETATM 4 C C4 Z8I . . . B 2 -24.71 -4.614 -24.077 1 50.41 ? C4 Z8I 4000 A 1 HETATM 5 C C5 Z8I . . . B 2 -24.475 -5.667 -25.208 1 51.38 ? C5 Z8I 4000 A 1 HETATM 6 C C6 Z8I . . . B 2 -24.083 -4.928 -22.728 1 50.35 ? C6 Z8I 4000 A 1 HETATM 7 C C7 Z8I . . . B 2 -24.466 -6.332 -22.303 1 50.43 ? C7 Z8I 4000 A 1 HETATM 8 C C8 Z8I . . . B 2 -24.092 -7.356 -23.341 1 50.55 ? C8 Z8I 4000 A 1 HETATM 9 C C9 Z8I . . . B 2 -24.048 -7.047 -24.707 1 50.88 ? C9 Z8I 4000 A 1 HETATM 10 C C10 Z8I . . . B 2 -23.777 -8.643 -22.926 1 50.66 ? C10 Z8I 4000 A 1 HETATM 11 C C11 Z8I . . . B 2 -23.415 -9.641 -23.819 1 50.91 ? C11 Z8I 4000 A 1 HETATM 12 C C12 Z8I . . . B 2 -23.348 -9.314 -25.167 1 50.56 ? C12 Z8I 4000 A 1 HETATM 13 C C13 Z8I . . . B 2 -23.66 -8.039 -25.599 1 50.63 ? C13 Z8I 4000 A 1 HETATM 14 C C14 Z8I . . . B 2 -23.152 -11.049 -23.323 1 51.75 ? C14 Z8I 4000 A 1 HETATM 15 S S15 Z8I . . . B 2 -26.066 -5.994 -26.089 1 53.52 ? S15 Z8I 4000 A 1 HETATM 16 C C16 Z8I . . . B 2 -27.031 -6.897 -24.921 1 52.32 ? C16 Z8I 4000 A 1 HETATM 17 C C17 Z8I . . . B 2 -27.776 -6.209 -23.98 1 51.86 ? C17 Z8I 4000 A 1 HETATM 18 C C18 Z8I . . . B 2 -28.487 -6.914 -23.03 1 51.67 ? C18 Z8I 4000 A 1 HETATM 19 C C19 Z8I . . . B 2 -27.717 -8.984 -23.984 1 51.52 ? C19 Z8I 4000 A 1 HETATM 20 C C20 Z8I . . . B 2 -27.004 -8.282 -24.935 1 51.75 ? C20 Z8I 4000 A 1 HETATM 21 C C21 Z8I . . . B 2 -28.433 -8.281 -23.056 1 51.58 ? C21 Z8I 4000 A 1 HETATM 22 O O22 Z8I . . . B 2 -25.805 -6.847 -27.219 1 53.69 ? O22 Z8I 4000 A 1 HETATM 23 O O23 Z8I . . . B 2 -26.721 -4.733 -26.324 1 54.29 ? O23 Z8I 4000 A 1 HETATM 24 C C24 Z8I . . . B 2 -24.469 -11.853 -23.252 1 50.82 ? C24 Z8I 4000 A 1 HETATM 25 C C25 Z8I . . . B 2 -22.088 -11.814 -24.131 1 53.56 ? C25 Z8I 4000 A 1 HETATM 26 F F26 Z8I . . . B 2 -22.673 -11.04 -22.029 1 51.37 ? F26 Z8I 4000 A 1 HETATM 27 F F27 Z8I . . . B 2 -21.744 -12.945 -23.51 1 54.3 ? F27 Z8I 4000 A 1 HETATM 28 F F28 Z8I . . . B 2 -20.981 -11.088 -24.298 1 53.98 ? F28 Z8I 4000 A 1 HETATM 29 F F29 Z8I . . . B 2 -22.543 -12.152 -25.342 1 53.86 ? F29 Z8I 4000 A 1 HETATM 30 F F30 Z8I . . . B 2 -25.383 -11.241 -22.5 1 50.74 ? F30 Z8I 4000 A 1 HETATM 31 F F31 Z8I . . . B 2 -24.259 -13.056 -22.732 1 50.79 ? F31 Z8I 4000 A 1 HETATM 32 F F32 Z8I . . . B 2 -25.003 -12.03 -24.46 1 50.05 ? F32 Z8I 4000 A 1 HETATM 33 F F33 Z8I . . . B 2 -29.111 -8.971 -22.108 1 51.68 ? F33 Z8I 4000 A 1 HETATM 34 C C34 Z8I . . . B 2 -24.708 -2.187 -24.352 1 48.61 ? C34 Z8I 4000 A 1 HETATM 35 C C35 Z8I . . . B 2 -23.99 -0.897 -24.774 1 47.85 ? C35 Z8I 4000 A 1 HETATM 36 O O36 Z8I . . . B 2 -25.758 -2.118 -23.733 1 48.44 ? O36 Z8I 4000 A 1 HETATM 37 C C37 Z8I . . . B 2 -22.783 -0.628 -23.863 1 47.45 ? C37 Z8I 4000 A 1 HETATM 38 C C38 Z8I . . . B 2 -23.309 0.31 -22.814 1 47.48 ? C38 Z8I 4000 A 1 HETATM 39 C C39 Z8I . . . B 2 -24.416 1.086 -23.553 1 47.36 ? C39 Z8I 4000 A 1 HETATM 40 N N40 Z8I . . . B 2 -24.846 0.293 -24.549 1 47.7 ? N40 Z8I 4000 A 1 HETATM 41 O O41 Z8I . . . B 2 -24.831 2.2 -23.291 1 47.22 ? O41 Z8I 4000 A 1 HETATM 42 F F42 Z8I . . . B 2 -22.3 1.17 -22.426 1 47.77 ? F42 Z8I 4000 A 1 HETATM 43 C C43 Z8I . . . B 2 -26.077 0.602 -25.328 1 47.86 ? C43 Z8I 4000 A 1 HETATM 44 C C44 Z8I . . . B 2 -25.838 0.996 -26.787 1 47.72 ? C44 Z8I 4000 A 1 HETATM 45 O O45 Z8I . . . B 2 -25.341 -0.158 -27.49 1 47.79 ? O45 Z8I 4000 A 1 HETATM 46 C C46 Z8I . . . B 2 -24.809 2.118 -26.894 1 47.38 ? C46 Z8I 4000 A 1 HETATM 47 C C47 Z8I . . . B 2 -27.155 1.403 -27.429 1 47.66 ? C47 Z8I 4000 A 1 HETATM 48 H H49 Z8I . . . B 2 -22.517 -5.689 -26.246 0 60.59 ? H49 Z8I 4000 A 1 HETATM 49 H H48 Z8I . . . B 2 -23.777 -4.967 -27.175 0 60.59 ? H48 Z8I 4000 A 1 HETATM 50 H H50 Z8I . . . B 2 -22.881 -2.953 -26.326 0 59.92 ? H50 Z8I 4000 A 1 HETATM 51 H H51 Z8I . . . B 2 -22.103 -3.749 -24.997 0 59.92 ? H51 Z8I 4000 A 1 HETATM 52 H H52 Z8I . . . B 2 -25.78 -4.506 -23.899 0 60.49 ? H52 Z8I 4000 A 1 HETATM 53 H H53 Z8I . . . B 2 -24.402 -4.196 -21.988 0 60.42 ? H53 Z8I 4000 A 1 HETATM 54 H H54 Z8I . . . B 2 -22.999 -4.839 -22.769 0 60.42 ? H54 Z8I 4000 A 1 HETATM 55 H H56 Z8I . . . B 2 -23.997 -6.561 -21.348 0 60.51 ? H56 Z8I 4000 A 1 HETATM 56 H H55 Z8I . . . B 2 -25.538 -6.404 -22.121 0 60.51 ? H55 Z8I 4000 A 1 HETATM 57 H H57 Z8I . . . B 2 -23.821 -8.859 -21.86 0 60.8 ? H57 Z8I 4000 A 1 HETATM 58 H H58 Z8I . . . B 2 -23.054 -10.037 -25.927 0 60.67 ? H58 Z8I 4000 A 1 HETATM 59 H H59 Z8I . . . B 2 -23.589 -7.842 -26.666 0 60.75 ? H59 Z8I 4000 A 1 HETATM 60 H H60 Z8I . . . B 2 -27.814 -5.123 -23.978 0 62.23 ? H60 Z8I 4000 A 1 HETATM 61 H H61 Z8I . . . B 2 -29.076 -6.387 -22.28 0 62 ? H61 Z8I 4000 A 1 HETATM 62 H H62 Z8I . . . B 2 -27.705 -10.073 -23.976 0 61.83 ? H62 Z8I 4000 A 1 HETATM 63 H H63 Z8I . . . B 2 -26.427 -8.82 -25.687 0 62.1 ? H63 Z8I 4000 A 1 HETATM 64 H H64 Z8I . . . B 2 -23.694 -0.955 -25.836 0 57.42 ? H64 Z8I 4000 A 1 HETATM 65 H H66 Z8I . . . B 2 -21.96 -0.2 -24.434 0 56.94 ? H66 Z8I 4000 A 1 HETATM 66 H H65 Z8I . . . B 2 -22.372 -1.545 -23.44 0 56.94 ? H65 Z8I 4000 A 1 HETATM 67 H H67 Z8I . . . B 2 -23.706 -0.178 -21.925 0 56.97 ? H67 Z8I 4000 A 1 HETATM 68 H H69 Z8I . . . B 2 -26.739 -0.262 -25.301 0 57.44 ? H69 Z8I 4000 A 1 HETATM 69 H H68 Z8I . . . B 2 -26.632 1.4 -24.837 0 57.44 ? H68 Z8I 4000 A 1 HETATM 70 H H70 Z8I . . . B 2 -25.163 0.127 -28.424 0 57.34 ? H70 Z8I 4000 A 1 HETATM 71 H H71 Z8I . . . B 2 -24.678 2.471 -27.916 0 56.86 ? H71 Z8I 4000 A 1 HETATM 72 H H73 Z8I . . . B 2 -23.825 1.81 -26.543 0 56.86 ? H73 Z8I 4000 A 1 HETATM 73 H H72 Z8I . . . B 2 -25.095 2.987 -26.302 0 56.86 ? H72 Z8I 4000 A 1 HETATM 74 H H75 Z8I . . . B 2 -27.039 1.684 -28.475 0 57.19 ? H75 Z8I 4000 A 1 HETATM 75 H H74 Z8I . . . B 2 -27.608 2.258 -26.929 0 57.19 ? H74 Z8I 4000 A 1 HETATM 76 H H76 Z8I . . . B 2 -27.887 0.596 -27.405 0 57.19 ? H76 Z8I 4000 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 76 #