data_7JYO
#
_model_server_result.job_id            8N6Orb8O-d8RmHjEbpELEA 
_model_server_result.datetime_utc      '2024-11-26 11:14:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7jyo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":902}' 
#
_entry.id    7JYO 
#
_exptl.entry_id    7JYO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.004 
_cell.angle_gamma         90 
_cell.entry_id            7JYO 
_cell.length_a            44.568 
_cell.length_b            57.375 
_cell.length_c            61.071 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7JYO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     7JYO 
_atom_sites.fract_transf_matrix[1][1]    0.022438 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008615 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017429 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01754 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 VPS A 1 901 1 VPS LIG . 
C 3 GOL A 1 902 1 GOL GOL . 
D 4 HOH A 1 1001 26 HOH HOH . 
D 4 HOH A 2 1002 153 HOH HOH . 
D 4 HOH A 3 1003 17 HOH HOH . 
D 4 HOH A 4 1004 59 HOH HOH . 
D 4 HOH A 5 1005 51 HOH HOH . 
D 4 HOH A 6 1006 112 HOH HOH . 
D 4 HOH A 7 1007 33 HOH HOH . 
D 4 HOH A 8 1008 39 HOH HOH . 
D 4 HOH A 9 1009 1 HOH HOH . 
D 4 HOH A 10 1010 57 HOH HOH . 
D 4 HOH A 11 1011 55 HOH HOH . 
D 4 HOH A 12 1012 10 HOH HOH . 
D 4 HOH A 13 1013 9 HOH HOH . 
D 4 HOH A 14 1014 46 HOH HOH . 
D 4 HOH A 15 1015 20 HOH HOH . 
D 4 HOH A 16 1016 53 HOH HOH . 
D 4 HOH A 17 1017 31 HOH HOH . 
D 4 HOH A 18 1018 66 HOH HOH . 
D 4 HOH A 19 1019 99 HOH HOH . 
D 4 HOH A 20 1020 41 HOH HOH . 
D 4 HOH A 21 1021 11 HOH HOH . 
D 4 HOH A 22 1022 72 HOH HOH . 
D 4 HOH A 23 1023 22 HOH HOH . 
D 4 HOH A 24 1024 7 HOH HOH . 
D 4 HOH A 25 1025 158 HOH HOH . 
D 4 HOH A 26 1026 52 HOH HOH . 
D 4 HOH A 27 1027 2 HOH HOH . 
D 4 HOH A 28 1028 96 HOH HOH . 
D 4 HOH A 29 1029 28 HOH HOH . 
D 4 HOH A 30 1030 44 HOH HOH . 
D 4 HOH A 31 1031 5 HOH HOH . 
D 4 HOH A 32 1032 155 HOH HOH . 
D 4 HOH A 33 1033 19 HOH HOH . 
D 4 HOH A 34 1034 77 HOH HOH . 
D 4 HOH A 35 1035 36 HOH HOH . 
D 4 HOH A 36 1036 65 HOH HOH . 
D 4 HOH A 37 1037 40 HOH HOH . 
D 4 HOH A 38 1038 38 HOH HOH . 
D 4 HOH A 39 1039 70 HOH HOH . 
D 4 HOH A 40 1040 32 HOH HOH . 
D 4 HOH A 41 1041 25 HOH HOH . 
D 4 HOH A 42 1042 15 HOH HOH . 
D 4 HOH A 43 1043 143 HOH HOH . 
D 4 HOH A 44 1044 30 HOH HOH . 
D 4 HOH A 45 1045 12 HOH HOH . 
D 4 HOH A 46 1046 61 HOH HOH . 
D 4 HOH A 47 1047 78 HOH HOH . 
D 4 HOH A 48 1048 23 HOH HOH . 
D 4 HOH A 49 1049 84 HOH HOH . 
D 4 HOH A 50 1050 18 HOH HOH . 
D 4 HOH A 51 1051 14 HOH HOH . 
D 4 HOH A 52 1052 58 HOH HOH . 
D 4 HOH A 53 1053 6 HOH HOH . 
D 4 HOH A 54 1054 4 HOH HOH . 
D 4 HOH A 55 1055 45 HOH HOH . 
D 4 HOH A 56 1056 113 HOH HOH . 
D 4 HOH A 57 1057 48 HOH HOH . 
D 4 HOH A 58 1058 37 HOH HOH . 
D 4 HOH A 59 1059 47 HOH HOH . 
D 4 HOH A 60 1060 27 HOH HOH . 
D 4 HOH A 61 1061 56 HOH HOH . 
D 4 HOH A 62 1062 74 HOH HOH . 
D 4 HOH A 63 1063 115 HOH HOH . 
D 4 HOH A 64 1064 68 HOH HOH . 
D 4 HOH A 65 1065 29 HOH HOH . 
D 4 HOH A 66 1066 13 HOH HOH . 
D 4 HOH A 67 1067 94 HOH HOH . 
D 4 HOH A 68 1068 3 HOH HOH . 
D 4 HOH A 69 1069 80 HOH HOH . 
D 4 HOH A 70 1070 54 HOH HOH . 
D 4 HOH A 71 1071 50 HOH HOH . 
D 4 HOH A 72 1072 116 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 -4.43 1.654 19.282 1 28.22 ? C1 GOL 902 A 1 
HETATM 2 O O1 GOL . . . C 3 -5.596 2.403 19.564 1 31.48 ? O1 GOL 902 A 1 
HETATM 3 C C2 GOL . . . C 3 -3.18 2.491 19.506 1 28.22 ? C2 GOL 902 A 1 
HETATM 4 O O2 GOL . . . C 3 -2.67 2.251 20.788 1 31.25 ? O2 GOL 902 A 1 
HETATM 5 C C3 GOL . . . C 3 -2.103 2.08 18.522 1 28.37 ? C3 GOL 902 A 1 
HETATM 6 O O3 GOL . . . C 3 -0.87 2.361 19.149 1 34.02 ? O3 GOL 902 A 1 
#
_model_server_stats.io_time_ms              98 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           6 
#