data_7JYP
#
_model_server_result.job_id            PhSMhYbvxhSfjZcMTJ9plw 
_model_server_result.datetime_utc      '2024-11-24 00:11:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7jyp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    7JYP 
#
_exptl.entry_id    7JYP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7JYP 
_cell.length_a            58.15 
_cell.length_b            58.15 
_cell.length_c            163.13 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7JYP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             173 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              146 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             176 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              149 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.858 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     7JYP 
_atom_sites.fract_transf_matrix[1][1]    0.017197 
_atom_sites.fract_transf_matrix[1][2]    0.009929 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019857 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00613 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FAD A 1 401 1 FAD FAD . 
C 3 NAD A 1 402 1 NAD NAD . 
D 4 HOH A 1 501 31 HOH HOH . 
D 4 HOH A 2 502 15 HOH HOH . 
D 4 HOH A 3 503 76 HOH HOH . 
D 4 HOH A 4 504 80 HOH HOH . 
D 4 HOH A 5 505 1 HOH HOH . 
D 4 HOH A 6 506 55 HOH HOH . 
D 4 HOH A 7 507 25 HOH HOH . 
D 4 HOH A 8 508 4 HOH HOH . 
D 4 HOH A 9 509 7 HOH HOH . 
D 4 HOH A 10 510 13 HOH HOH . 
D 4 HOH A 11 511 48 HOH HOH . 
D 4 HOH A 12 512 113 HOH HOH . 
D 4 HOH A 13 513 139 HOH HOH . 
D 4 HOH A 14 514 3 HOH HOH . 
D 4 HOH A 15 515 9 HOH HOH . 
D 4 HOH A 16 516 14 HOH HOH . 
D 4 HOH A 17 517 75 HOH HOH . 
D 4 HOH A 18 518 56 HOH HOH . 
D 4 HOH A 19 519 29 HOH HOH . 
D 4 HOH A 20 520 58 HOH HOH . 
D 4 HOH A 21 521 40 HOH HOH . 
D 4 HOH A 22 522 23 HOH HOH . 
D 4 HOH A 23 523 63 HOH HOH . 
D 4 HOH A 24 524 109 HOH HOH . 
D 4 HOH A 25 525 51 HOH HOH . 
D 4 HOH A 26 526 71 HOH HOH . 
D 4 HOH A 27 527 102 HOH HOH . 
D 4 HOH A 28 528 61 HOH HOH . 
D 4 HOH A 29 529 2 HOH HOH . 
D 4 HOH A 30 530 17 HOH HOH . 
D 4 HOH A 31 531 69 HOH HOH . 
D 4 HOH A 32 532 45 HOH HOH . 
D 4 HOH A 33 533 72 HOH HOH . 
D 4 HOH A 34 534 108 HOH HOH . 
D 4 HOH A 35 535 19 HOH HOH . 
D 4 HOH A 36 536 47 HOH HOH . 
D 4 HOH A 37 537 33 HOH HOH . 
D 4 HOH A 38 538 10 HOH HOH . 
D 4 HOH A 39 539 65 HOH HOH . 
D 4 HOH A 40 540 32 HOH HOH . 
D 4 HOH A 41 541 22 HOH HOH . 
D 4 HOH A 42 542 111 HOH HOH . 
D 4 HOH A 43 543 44 HOH HOH . 
D 4 HOH A 44 544 36 HOH HOH . 
D 4 HOH A 45 545 27 HOH HOH . 
D 4 HOH A 46 546 11 HOH HOH . 
D 4 HOH A 47 547 53 HOH HOH . 
D 4 HOH A 48 548 8 HOH HOH . 
D 4 HOH A 49 549 6 HOH HOH . 
D 4 HOH A 50 550 52 HOH HOH . 
D 4 HOH A 51 551 60 HOH HOH . 
D 4 HOH A 52 552 107 HOH HOH . 
D 4 HOH A 53 553 67 HOH HOH . 
D 4 HOH A 54 554 110 HOH HOH . 
D 4 HOH A 55 555 35 HOH HOH . 
D 4 HOH A 56 556 28 HOH HOH . 
D 4 HOH A 57 557 46 HOH HOH . 
D 4 HOH A 58 558 16 HOH HOH . 
D 4 HOH A 59 559 74 HOH HOH . 
D 4 HOH A 60 560 133 HOH HOH . 
D 4 HOH A 61 561 30 HOH HOH . 
D 4 HOH A 62 562 85 HOH HOH . 
D 4 HOH A 63 563 21 HOH HOH . 
D 4 HOH A 64 564 34 HOH HOH . 
D 4 HOH A 65 565 59 HOH HOH . 
D 4 HOH A 66 566 68 HOH HOH . 
D 4 HOH A 67 567 41 HOH HOH . 
D 4 HOH A 68 568 12 HOH HOH . 
D 4 HOH A 69 569 37 HOH HOH . 
D 4 HOH A 70 570 20 HOH HOH . 
D 4 HOH A 71 571 112 HOH HOH . 
D 4 HOH A 72 572 50 HOH HOH . 
D 4 HOH A 73 573 64 HOH HOH . 
D 4 HOH A 74 574 49 HOH HOH . 
D 4 HOH A 75 575 24 HOH HOH . 
D 4 HOH A 76 576 43 HOH HOH . 
D 4 HOH A 77 577 105 HOH HOH . 
D 4 HOH A 78 578 73 HOH HOH . 
D 4 HOH A 79 579 38 HOH HOH . 
D 4 HOH A 80 580 98 HOH HOH . 
D 4 HOH A 81 581 62 HOH HOH . 
D 4 HOH A 82 582 103 HOH HOH . 
D 4 HOH A 83 583 18 HOH HOH . 
D 4 HOH A 84 584 39 HOH HOH . 
D 4 HOH A 85 585 5 HOH HOH . 
D 4 HOH A 86 586 106 HOH HOH . 
D 4 HOH A 87 587 138 HOH HOH . 
D 4 HOH A 88 588 26 HOH HOH . 
D 4 HOH A 89 589 66 HOH HOH . 
D 4 HOH A 90 590 42 HOH HOH . 
D 4 HOH A 91 591 54 HOH HOH . 
D 4 HOH A 92 592 152 HOH HOH . 
D 4 HOH A 93 593 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . B 2 -9.502 -12.161 -13.975 1 25.31 ? PA FAD 401 A 1 
HETATM 2 O O1A FAD . . . B 2 -9.483 -13.383 -13.3 1 26.19 ? O1A FAD 401 A 1 
HETATM 3 O O2A FAD . . . B 2 -8.663 -12.088 -15.115 1 29.19 ? O2A FAD 401 A 1 
HETATM 4 O O5B FAD . . . B 2 -10.929 -11.771 -14.376 1 23.98 ? O5B FAD 401 A 1 
HETATM 5 C C5B FAD . . . B 2 -11.162 -10.694 -15.229 1 26.41 ? C5B FAD 401 A 1 
HETATM 6 C C4B FAD . . . B 2 -12.471 -10.868 -15.99 1 26.61 ? C4B FAD 401 A 1 
HETATM 7 O O4B FAD . . . B 2 -12.97 -9.669 -16.547 1 25.09 ? O4B FAD 401 A 1 
HETATM 8 C C3B FAD . . . B 2 -12.28 -11.841 -17.128 1 29.03 ? C3B FAD 401 A 1 
HETATM 9 O O3B FAD . . . B 2 -13.097 -12.951 -16.933 1 24.63 ? O3B FAD 401 A 1 
HETATM 10 C C2B FAD . . . B 2 -12.733 -11.076 -18.345 1 30.7 ? C2B FAD 401 A 1 
HETATM 11 O O2B FAD . . . B 2 -13.455 -11.869 -19.224 1 30.39 ? O2B FAD 401 A 1 
HETATM 12 C C1B FAD . . . B 2 -13.576 -9.959 -17.778 1 27.05 ? C1B FAD 401 A 1 
HETATM 13 N N9A FAD . . . B 2 -13.631 -8.752 -18.593 1 27.52 ? N9A FAD 401 A 1 
HETATM 14 C C8A FAD . . . B 2 -12.597 -8.079 -19.018 1 26.66 ? C8A FAD 401 A 1 
HETATM 15 N N7A FAD . . . B 2 -12.975 -7.023 -19.701 1 26.17 ? N7A FAD 401 A 1 
HETATM 16 C C5A FAD . . . B 2 -14.274 -7.007 -19.719 1 26.94 ? C5A FAD 401 A 1 
HETATM 17 C C6A FAD . . . B 2 -15.285 -6.127 -20.287 1 30.33 ? C6A FAD 401 A 1 
HETATM 18 N N6A FAD . . . B 2 -14.914 -5.048 -20.994 1 27.89 ? N6A FAD 401 A 1 
HETATM 19 N N1A FAD . . . B 2 -16.555 -6.457 -20.081 1 27.27 ? N1A FAD 401 A 1 
HETATM 20 C C2A FAD . . . B 2 -16.89 -7.529 -19.39 1 27.76 ? C2A FAD 401 A 1 
HETATM 21 N N3A FAD . . . B 2 -16.01 -8.358 -18.861 1 25.51 ? N3A FAD 401 A 1 
HETATM 22 C C4A FAD . . . B 2 -14.714 -8.148 -18.979 1 28.57 ? C4A FAD 401 A 1 
HETATM 23 C C1' FAD . . . B 2 -3.679 -16.195 -11.189 1 39.72 ? C1' FAD 401 A 1 
HETATM 24 C C2' FAD . . . B 2 -5.093 -15.778 -10.84 1 38.46 ? C2' FAD 401 A 1 
HETATM 25 O O2' FAD . . . B 2 -6.009 -16.584 -11.542 1 38.84 ? O2' FAD 401 A 1 
HETATM 26 C C3' FAD . . . B 2 -5.357 -14.343 -11.229 1 29.97 ? C3' FAD 401 A 1 
HETATM 27 O O3' FAD . . . B 2 -4.437 -13.512 -10.615 1 32.99 ? O3' FAD 401 A 1 
HETATM 28 C C4' FAD . . . B 2 -6.711 -13.906 -10.772 1 30.66 ? C4' FAD 401 A 1 
HETATM 29 O O4' FAD . . . B 2 -7.64 -14.735 -11.43 1 32.42 ? O4' FAD 401 A 1 
HETATM 30 C C5' FAD . . . B 2 -6.894 -12.423 -11.095 1 27.01 ? C5' FAD 401 A 1 
HETATM 31 O O5' FAD . . . B 2 -8.227 -12.094 -10.933 1 27.71 ? O5' FAD 401 A 1 
HETATM 32 P P FAD . . . B 2 -8.914 -10.843 -11.451 1 23.21 ? P FAD 401 A 1 
HETATM 33 O O1P FAD . . . B 2 -10.261 -10.877 -11.01 1 22.48 ? O1P FAD 401 A 1 
HETATM 34 O O2P FAD . . . B 2 -8.147 -9.682 -11.195 1 22.91 ? O2P FAD 401 A 1 
HETATM 35 O O3P FAD . . . B 2 -9.001 -11.002 -13.035 1 22.36 ? O3P FAD 401 A 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           35 
#