data_7JYP
#
_model_server_result.job_id            2yMe1g2CTtUVWWx0dno4SA 
_model_server_result.datetime_utc      '2024-11-21 16:59:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7jyp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    7JYP 
#
_exptl.entry_id    7JYP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7JYP 
_cell.length_a            58.15 
_cell.length_b            58.15 
_cell.length_c            163.13 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7JYP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             173 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              146 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             176 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              149 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.858 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 328 n n 
PA O2A NAD sing 329 n n 
PA O5B NAD sing 330 n n 
PA O3 NAD sing 331 n n 
O2A HOA2 NAD sing 332 n n 
O5B C5B NAD sing 333 n n 
C5B C4B NAD sing 334 n n 
C5B H51A NAD sing 335 n n 
C5B H52A NAD sing 336 n n 
C4B O4B NAD sing 337 n n 
C4B C3B NAD sing 338 n n 
C4B H4B NAD sing 339 n n 
O4B C1B NAD sing 340 n n 
C3B O3B NAD sing 341 n n 
C3B C2B NAD sing 342 n n 
C3B H3B NAD sing 343 n n 
O3B HO3A NAD sing 344 n n 
C2B O2B NAD sing 345 n n 
C2B C1B NAD sing 346 n n 
C2B H2B NAD sing 347 n n 
O2B HO2A NAD sing 348 n n 
C1B N9A NAD sing 349 n n 
C1B H1B NAD sing 350 n n 
N9A C8A NAD sing 351 n y 
N9A C4A NAD sing 352 n y 
C8A N7A NAD doub 353 n y 
C8A H8A NAD sing 354 n n 
N7A C5A NAD sing 355 n y 
C5A C6A NAD sing 356 n y 
C5A C4A NAD doub 357 n y 
C6A N6A NAD sing 358 n n 
C6A N1A NAD doub 359 n y 
N6A H61A NAD sing 360 n n 
N6A H62A NAD sing 361 n n 
N1A C2A NAD sing 362 n y 
C2A N3A NAD doub 363 n y 
C2A H2A NAD sing 364 n n 
N3A C4A NAD sing 365 n y 
O3 PN NAD sing 366 n n 
PN O1N NAD doub 367 n n 
PN O2N NAD sing 368 n n 
PN O5D NAD sing 369 n n 
O5D C5D NAD sing 370 n n 
C5D C4D NAD sing 371 n n 
C5D H51N NAD sing 372 n n 
C5D H52N NAD sing 373 n n 
C4D O4D NAD sing 374 n n 
C4D C3D NAD sing 375 n n 
C4D H4D NAD sing 376 n n 
O4D C1D NAD sing 377 n n 
C3D O3D NAD sing 378 n n 
C3D C2D NAD sing 379 n n 
C3D H3D NAD sing 380 n n 
O3D HO3N NAD sing 381 n n 
C2D O2D NAD sing 382 n n 
C2D C1D NAD sing 383 n n 
C2D H2D NAD sing 384 n n 
O2D HO2N NAD sing 385 n n 
C1D N1N NAD sing 386 n n 
C1D H1D NAD sing 387 n n 
N1N C2N NAD sing 388 n y 
N1N C6N NAD doub 389 n y 
C2N C3N NAD doub 390 n y 
C2N H2N NAD sing 391 n n 
C3N C7N NAD sing 392 n n 
C3N C4N NAD sing 393 n y 
C7N O7N NAD doub 394 n n 
C7N N7N NAD sing 395 n n 
N7N H71N NAD sing 396 n n 
N7N H72N NAD sing 397 n n 
C4N C5N NAD doub 398 n y 
C4N H4N NAD sing 399 n n 
C5N C6N NAD sing 400 n y 
C5N H5N NAD sing 401 n n 
C6N H6N NAD sing 402 n n 
#
_atom_sites.entry_id                     7JYP 
_atom_sites.fract_transf_matrix[1][1]    0.017197 
_atom_sites.fract_transf_matrix[1][2]    0.009929 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019857 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00613 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FAD A 1 401 1 FAD FAD . 
C 3 NAD A 1 402 1 NAD NAD . 
D 4 HOH A 1 501 31 HOH HOH . 
D 4 HOH A 2 502 15 HOH HOH . 
D 4 HOH A 3 503 76 HOH HOH . 
D 4 HOH A 4 504 80 HOH HOH . 
D 4 HOH A 5 505 1 HOH HOH . 
D 4 HOH A 6 506 55 HOH HOH . 
D 4 HOH A 7 507 25 HOH HOH . 
D 4 HOH A 8 508 4 HOH HOH . 
D 4 HOH A 9 509 7 HOH HOH . 
D 4 HOH A 10 510 13 HOH HOH . 
D 4 HOH A 11 511 48 HOH HOH . 
D 4 HOH A 12 512 113 HOH HOH . 
D 4 HOH A 13 513 139 HOH HOH . 
D 4 HOH A 14 514 3 HOH HOH . 
D 4 HOH A 15 515 9 HOH HOH . 
D 4 HOH A 16 516 14 HOH HOH . 
D 4 HOH A 17 517 75 HOH HOH . 
D 4 HOH A 18 518 56 HOH HOH . 
D 4 HOH A 19 519 29 HOH HOH . 
D 4 HOH A 20 520 58 HOH HOH . 
D 4 HOH A 21 521 40 HOH HOH . 
D 4 HOH A 22 522 23 HOH HOH . 
D 4 HOH A 23 523 63 HOH HOH . 
D 4 HOH A 24 524 109 HOH HOH . 
D 4 HOH A 25 525 51 HOH HOH . 
D 4 HOH A 26 526 71 HOH HOH . 
D 4 HOH A 27 527 102 HOH HOH . 
D 4 HOH A 28 528 61 HOH HOH . 
D 4 HOH A 29 529 2 HOH HOH . 
D 4 HOH A 30 530 17 HOH HOH . 
D 4 HOH A 31 531 69 HOH HOH . 
D 4 HOH A 32 532 45 HOH HOH . 
D 4 HOH A 33 533 72 HOH HOH . 
D 4 HOH A 34 534 108 HOH HOH . 
D 4 HOH A 35 535 19 HOH HOH . 
D 4 HOH A 36 536 47 HOH HOH . 
D 4 HOH A 37 537 33 HOH HOH . 
D 4 HOH A 38 538 10 HOH HOH . 
D 4 HOH A 39 539 65 HOH HOH . 
D 4 HOH A 40 540 32 HOH HOH . 
D 4 HOH A 41 541 22 HOH HOH . 
D 4 HOH A 42 542 111 HOH HOH . 
D 4 HOH A 43 543 44 HOH HOH . 
D 4 HOH A 44 544 36 HOH HOH . 
D 4 HOH A 45 545 27 HOH HOH . 
D 4 HOH A 46 546 11 HOH HOH . 
D 4 HOH A 47 547 53 HOH HOH . 
D 4 HOH A 48 548 8 HOH HOH . 
D 4 HOH A 49 549 6 HOH HOH . 
D 4 HOH A 50 550 52 HOH HOH . 
D 4 HOH A 51 551 60 HOH HOH . 
D 4 HOH A 52 552 107 HOH HOH . 
D 4 HOH A 53 553 67 HOH HOH . 
D 4 HOH A 54 554 110 HOH HOH . 
D 4 HOH A 55 555 35 HOH HOH . 
D 4 HOH A 56 556 28 HOH HOH . 
D 4 HOH A 57 557 46 HOH HOH . 
D 4 HOH A 58 558 16 HOH HOH . 
D 4 HOH A 59 559 74 HOH HOH . 
D 4 HOH A 60 560 133 HOH HOH . 
D 4 HOH A 61 561 30 HOH HOH . 
D 4 HOH A 62 562 85 HOH HOH . 
D 4 HOH A 63 563 21 HOH HOH . 
D 4 HOH A 64 564 34 HOH HOH . 
D 4 HOH A 65 565 59 HOH HOH . 
D 4 HOH A 66 566 68 HOH HOH . 
D 4 HOH A 67 567 41 HOH HOH . 
D 4 HOH A 68 568 12 HOH HOH . 
D 4 HOH A 69 569 37 HOH HOH . 
D 4 HOH A 70 570 20 HOH HOH . 
D 4 HOH A 71 571 112 HOH HOH . 
D 4 HOH A 72 572 50 HOH HOH . 
D 4 HOH A 73 573 64 HOH HOH . 
D 4 HOH A 74 574 49 HOH HOH . 
D 4 HOH A 75 575 24 HOH HOH . 
D 4 HOH A 76 576 43 HOH HOH . 
D 4 HOH A 77 577 105 HOH HOH . 
D 4 HOH A 78 578 73 HOH HOH . 
D 4 HOH A 79 579 38 HOH HOH . 
D 4 HOH A 80 580 98 HOH HOH . 
D 4 HOH A 81 581 62 HOH HOH . 
D 4 HOH A 82 582 103 HOH HOH . 
D 4 HOH A 83 583 18 HOH HOH . 
D 4 HOH A 84 584 39 HOH HOH . 
D 4 HOH A 85 585 5 HOH HOH . 
D 4 HOH A 86 586 106 HOH HOH . 
D 4 HOH A 87 587 138 HOH HOH . 
D 4 HOH A 88 588 26 HOH HOH . 
D 4 HOH A 89 589 66 HOH HOH . 
D 4 HOH A 90 590 42 HOH HOH . 
D 4 HOH A 91 591 54 HOH HOH . 
D 4 HOH A 92 592 152 HOH HOH . 
D 4 HOH A 93 593 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . C 3 8.467 -7.641 -20.678 1 47.39 ? PA NAD 402 A 1 
HETATM 2 O O1A NAD . . . C 3 7.632 -7.182 -21.775 1 52.62 ? O1A NAD 402 A 1 
HETATM 3 O O2A NAD . . . C 3 9.256 -6.664 -19.976 1 46.71 ? O2A NAD 402 A 1 
HETATM 4 O O5B NAD . . . C 3 9.379 -8.854 -21.1 1 44.84 ? O5B NAD 402 A 1 
HETATM 5 C C5B NAD . . . C 3 9.033 -9.879 -21.998 1 39.93 ? C5B NAD 402 A 1 
HETATM 6 C C4B NAD . . . C 3 10.299 -10.659 -22.25 1 36.94 ? C4B NAD 402 A 1 
HETATM 7 O O4B NAD . . . C 3 10.045 -11.74 -23.116 1 39.36 ? O4B NAD 402 A 1 
HETATM 8 C C3B NAD . . . C 3 11.221 -9.728 -22.976 1 42.28 ? C3B NAD 402 A 1 
HETATM 9 O O3B NAD . . . C 3 12.53 -9.97 -22.592 1 37.88 ? O3B NAD 402 A 1 
HETATM 10 C C2B NAD . . . C 3 10.985 -10.091 -24.421 1 38.79 ? C2B NAD 402 A 1 
HETATM 11 O O2B NAD . . . C 3 12.078 -9.89 -25.219 1 37.48 ? O2B NAD 402 A 1 
HETATM 12 C C1B NAD . . . C 3 10.752 -11.555 -24.324 1 42.47 ? C1B NAD 402 A 1 
HETATM 13 N N9A NAD . . . C 3 9.851 -11.987 -25.329 1 42.51 ? N9A NAD 402 A 1 
HETATM 14 C C8A NAD . . . C 3 8.871 -11.313 -25.885 1 34.41 ? C8A NAD 402 A 1 
HETATM 15 N N7A NAD . . . C 3 8.242 -12.096 -26.754 1 37.07 ? N7A NAD 402 A 1 
HETATM 16 C C5A NAD . . . C 3 8.829 -13.283 -26.753 1 33.96 ? C5A NAD 402 A 1 
HETATM 17 C C6A NAD . . . C 3 8.661 -14.57 -27.462 1 36.82 ? C6A NAD 402 A 1 
HETATM 18 N N6A NAD . . . C 3 7.708 -14.76 -28.371 1 34.15 ? N6A NAD 402 A 1 
HETATM 19 N N1A NAD . . . C 3 9.516 -15.539 -27.158 1 33.96 ? N1A NAD 402 A 1 
HETATM 20 C C2A NAD . . . C 3 10.469 -15.355 -26.258 1 31.2 ? C2A NAD 402 A 1 
HETATM 21 N N3A NAD . . . C 3 10.702 -14.237 -25.594 1 32.12 ? N3A NAD 402 A 1 
HETATM 22 C C4A NAD . . . C 3 9.909 -13.19 -25.801 1 33.05 ? C4A NAD 402 A 1 
HETATM 23 O O3 NAD . . . C 3 7.424 -8.26 -19.74 1 43.85 ? O3 NAD 402 A 1 
HETATM 24 P PN NAD . . . C 3 7.619 -8.499 -18.208 1 46.77 ? PN NAD 402 A 1 
HETATM 25 O O1N NAD . . . C 3 8.565 -9.537 -17.938 1 41.03 ? O1N NAD 402 A 1 
HETATM 26 O O2N NAD . . . C 3 6.226 -8.603 -17.758 1 45.17 ? O2N NAD 402 A 1 
HETATM 27 O O5D NAD . . . C 3 8.227 -7.149 -17.677 1 52 ? O5D NAD 402 A 1 
#
_model_server_stats.io_time_ms              76 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#