data_7JYQ # _model_server_result.job_id 0ArSX4638us9-_PHQLy-5Q _model_server_result.datetime_utc '2024-11-23 00:35:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jyq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 7JYQ # _exptl.entry_id 7JYQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.554 _cell.angle_gamma 90 _cell.entry_id 7JYQ _cell.length_a 44.446 _cell.length_b 57.337 _cell.length_c 60.965 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JYQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7JYQ _atom_sites.fract_transf_matrix[1][1] 0.022499 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008436 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017441 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017518 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 901 901 GOL GOL . C 3 VPJ A 1 902 1 VPJ LIG . D 4 HOH A 1 1001 224 HOH HOH . D 4 HOH A 2 1002 58 HOH HOH . D 4 HOH A 3 1003 112 HOH HOH . D 4 HOH A 4 1004 66 HOH HOH . D 4 HOH A 5 1005 169 HOH HOH . D 4 HOH A 6 1006 16 HOH HOH . D 4 HOH A 7 1007 74 HOH HOH . D 4 HOH A 8 1008 118 HOH HOH . D 4 HOH A 9 1009 100 HOH HOH . D 4 HOH A 10 1010 102 HOH HOH . D 4 HOH A 11 1011 45 HOH HOH . D 4 HOH A 12 1012 115 HOH HOH . D 4 HOH A 13 1013 104 HOH HOH . D 4 HOH A 14 1014 61 HOH HOH . D 4 HOH A 15 1015 70 HOH HOH . D 4 HOH A 16 1016 176 HOH HOH . D 4 HOH A 17 1017 106 HOH HOH . D 4 HOH A 18 1018 85 HOH HOH . D 4 HOH A 19 1019 3 HOH HOH . D 4 HOH A 20 1020 11 HOH HOH . D 4 HOH A 21 1021 19 HOH HOH . D 4 HOH A 22 1022 9 HOH HOH . D 4 HOH A 23 1023 120 HOH HOH . D 4 HOH A 24 1024 166 HOH HOH . D 4 HOH A 25 1025 105 HOH HOH . D 4 HOH A 26 1026 76 HOH HOH . D 4 HOH A 27 1027 53 HOH HOH . D 4 HOH A 28 1028 209 HOH HOH . D 4 HOH A 29 1029 44 HOH HOH . D 4 HOH A 30 1030 222 HOH HOH . D 4 HOH A 31 1031 128 HOH HOH . D 4 HOH A 32 1032 25 HOH HOH . D 4 HOH A 33 1033 56 HOH HOH . D 4 HOH A 34 1034 31 HOH HOH . D 4 HOH A 35 1035 96 HOH HOH . D 4 HOH A 36 1036 7 HOH HOH . D 4 HOH A 37 1037 12 HOH HOH . D 4 HOH A 38 1038 203 HOH HOH . D 4 HOH A 39 1039 83 HOH HOH . D 4 HOH A 40 1040 35 HOH HOH . D 4 HOH A 41 1041 124 HOH HOH . D 4 HOH A 42 1042 55 HOH HOH . D 4 HOH A 43 1043 111 HOH HOH . D 4 HOH A 44 1044 162 HOH HOH . D 4 HOH A 45 1045 97 HOH HOH . D 4 HOH A 46 1046 46 HOH HOH . D 4 HOH A 47 1047 134 HOH HOH . D 4 HOH A 48 1048 78 HOH HOH . D 4 HOH A 49 1049 57 HOH HOH . D 4 HOH A 50 1050 10 HOH HOH . D 4 HOH A 51 1051 41 HOH HOH . D 4 HOH A 52 1052 153 HOH HOH . D 4 HOH A 53 1053 79 HOH HOH . D 4 HOH A 54 1054 71 HOH HOH . D 4 HOH A 55 1055 36 HOH HOH . D 4 HOH A 56 1056 59 HOH HOH . D 4 HOH A 57 1057 131 HOH HOH . D 4 HOH A 58 1058 88 HOH HOH . D 4 HOH A 59 1059 69 HOH HOH . D 4 HOH A 60 1060 65 HOH HOH . D 4 HOH A 61 1061 18 HOH HOH . D 4 HOH A 62 1062 51 HOH HOH . D 4 HOH A 63 1063 68 HOH HOH . D 4 HOH A 64 1064 193 HOH HOH . D 4 HOH A 65 1065 89 HOH HOH . D 4 HOH A 66 1066 6 HOH HOH . D 4 HOH A 67 1067 2 HOH HOH . D 4 HOH A 68 1068 8 HOH HOH . D 4 HOH A 69 1069 38 HOH HOH . D 4 HOH A 70 1070 77 HOH HOH . D 4 HOH A 71 1071 194 HOH HOH . D 4 HOH A 72 1072 52 HOH HOH . D 4 HOH A 73 1073 49 HOH HOH . D 4 HOH A 74 1074 64 HOH HOH . D 4 HOH A 75 1075 47 HOH HOH . D 4 HOH A 76 1076 23 HOH HOH . D 4 HOH A 77 1077 72 HOH HOH . D 4 HOH A 78 1078 42 HOH HOH . D 4 HOH A 79 1079 24 HOH HOH . D 4 HOH A 80 1080 1 HOH HOH . D 4 HOH A 81 1081 14 HOH HOH . D 4 HOH A 82 1082 4 HOH HOH . D 4 HOH A 83 1083 121 HOH HOH . D 4 HOH A 84 1084 22 HOH HOH . D 4 HOH A 85 1085 21 HOH HOH . D 4 HOH A 86 1086 133 HOH HOH . D 4 HOH A 87 1087 5 HOH HOH . D 4 HOH A 88 1088 13 HOH HOH . D 4 HOH A 89 1089 39 HOH HOH . D 4 HOH A 90 1090 92 HOH HOH . D 4 HOH A 91 1091 235 HOH HOH . D 4 HOH A 92 1092 139 HOH HOH . D 4 HOH A 93 1093 168 HOH HOH . D 4 HOH A 94 1094 123 HOH HOH . D 4 HOH A 95 1095 250 HOH HOH . D 4 HOH A 96 1096 95 HOH HOH . D 4 HOH A 97 1097 93 HOH HOH . D 4 HOH A 98 1098 146 HOH HOH . D 4 HOH A 99 1099 32 HOH HOH . D 4 HOH A 100 1100 15 HOH HOH . D 4 HOH A 101 1101 67 HOH HOH . D 4 HOH A 102 1102 142 HOH HOH . D 4 HOH A 103 1103 48 HOH HOH . D 4 HOH A 104 1104 103 HOH HOH . D 4 HOH A 105 1105 86 HOH HOH . D 4 HOH A 106 1106 137 HOH HOH . D 4 HOH A 107 1107 73 HOH HOH . D 4 HOH A 108 1108 43 HOH HOH . D 4 HOH A 109 1109 33 HOH HOH . D 4 HOH A 110 1110 108 HOH HOH . D 4 HOH A 111 1111 75 HOH HOH . D 4 HOH A 112 1112 107 HOH HOH . D 4 HOH A 113 1113 28 HOH HOH . D 4 HOH A 114 1114 84 HOH HOH . D 4 HOH A 115 1115 20 HOH HOH . D 4 HOH A 116 1116 17 HOH HOH . D 4 HOH A 117 1117 60 HOH HOH . D 4 HOH A 118 1118 172 HOH HOH . D 4 HOH A 119 1119 127 HOH HOH . D 4 HOH A 120 1120 54 HOH HOH . D 4 HOH A 121 1121 37 HOH HOH . D 4 HOH A 122 1122 34 HOH HOH . D 4 HOH A 123 1123 27 HOH HOH . D 4 HOH A 124 1124 257 HOH HOH . D 4 HOH A 125 1125 29 HOH HOH . D 4 HOH A 126 1126 140 HOH HOH . D 4 HOH A 127 1127 122 HOH HOH . D 4 HOH A 128 1128 160 HOH HOH . D 4 HOH A 129 1129 252 HOH HOH . D 4 HOH A 130 1130 207 HOH HOH . D 4 HOH A 131 1131 229 HOH HOH . D 4 HOH A 132 1132 204 HOH HOH . D 4 HOH A 133 1133 138 HOH HOH . D 4 HOH A 134 1134 117 HOH HOH . D 4 HOH A 135 1135 116 HOH HOH . D 4 HOH A 136 1136 180 HOH HOH . D 4 HOH A 137 1137 247 HOH HOH . D 4 HOH A 138 1138 260 HOH HOH . D 4 HOH A 139 1139 231 HOH HOH . D 4 HOH A 140 1140 259 HOH HOH . D 4 HOH A 141 1141 91 HOH HOH . D 4 HOH A 142 1142 130 HOH HOH . D 4 HOH A 143 1143 129 HOH HOH . D 4 HOH A 144 1144 232 HOH HOH . D 4 HOH A 145 1145 136 HOH HOH . D 4 HOH A 146 1146 90 HOH HOH . D 4 HOH A 147 1147 109 HOH HOH . D 4 HOH A 148 1148 113 HOH HOH . D 4 HOH A 149 1149 40 HOH HOH . D 4 HOH A 150 1150 158 HOH HOH . D 4 HOH A 151 1151 101 HOH HOH . D 4 HOH A 152 1152 186 HOH HOH . D 4 HOH A 153 1153 148 HOH HOH . D 4 HOH A 154 1154 82 HOH HOH . D 4 HOH A 155 1155 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -3.654 1.566 19.097 1 26.96 ? C1 GOL 901 A 1 HETATM 2 O O1 GOL . . . B 2 -4.954 1.428 19.637 1 35.73 ? O1 GOL 901 A 1 HETATM 3 C C2 GOL . . . B 2 -2.606 0.954 20.025 1 14.69 ? C2 GOL 901 A 1 HETATM 4 O O2 GOL . . . B 2 -2.244 1.922 20.968 1 29.66 ? O2 GOL 901 A 1 HETATM 5 C C3 GOL . . . B 2 -1.392 0.619 19.202 1 27.59 ? C3 GOL 901 A 1 HETATM 6 O O3 GOL . . . B 2 -1.095 1.74 18.418 1 28.44 ? O3 GOL 901 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #