data_7JYQ # _model_server_result.job_id PgP-WxTj9ScKf7rweOq9eQ _model_server_result.datetime_utc '2024-11-23 00:06:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jyq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":902}' # _entry.id 7JYQ # _exptl.entry_id 7JYQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 434.514 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description N~2~-(4-fluorophenyl)-6-{[(5-{[(oxolan-2-yl)methyl]amino}-1,3,4-thiadiazol-2-yl)sulfanyl]methyl}-1,3,5-triazine-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.554 _cell.angle_gamma 90 _cell.entry_id 7JYQ _cell.length_a 44.446 _cell.length_b 57.337 _cell.length_c 60.965 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JYQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H19 F N8 O S2' _chem_comp.formula_weight 434.514 _chem_comp.id VPJ _chem_comp.mon_nstd_flag . _chem_comp.name N~2~-(4-fluorophenyl)-6-{[(5-{[(oxolan-2-yl)methyl]amino}-1,3,4-thiadiazol-2-yl)sulfanyl]methyl}-1,3,5-triazine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C02 VPJ sing 389 n n C02 N23 VPJ doub 390 n y C02 N03 VPJ sing 391 n y N23 C14 VPJ sing 392 n y N03 C04 VPJ doub 393 n y C14 N15 VPJ sing 394 n n C14 N13 VPJ doub 395 n y N15 C16 VPJ sing 396 n n C17 C16 VPJ doub 397 n y C17 C18 VPJ sing 398 n y S06 C05 VPJ sing 399 n n S06 C07 VPJ sing 400 n n C04 N13 VPJ sing 401 n y C04 C05 VPJ sing 402 n n C16 C22 VPJ sing 403 n y C18 C19 VPJ doub 404 n y N08 C07 VPJ doub 405 n y N08 N09 VPJ sing 406 n y C07 S12 VPJ sing 407 n y C22 C21 VPJ doub 408 n y C19 C21 VPJ sing 409 n y C19 F20 VPJ sing 410 n n N09 C10 VPJ doub 411 n y S12 C10 VPJ sing 412 n y C10 N11 VPJ sing 413 n n C17 H1 VPJ sing 414 n n C21 H2 VPJ sing 415 n n C22 H3 VPJ sing 416 n n C05 H4 VPJ sing 417 n n C05 H5 VPJ sing 418 n n C18 H6 VPJ sing 419 n n N01 H7 VPJ sing 420 n n N01 H8 VPJ sing 421 n n N11 H9 VPJ sing 422 n n N15 H11 VPJ sing 423 n n N11 C1 VPJ sing 424 n n C1 C2 VPJ sing 425 n n C2 C3 VPJ sing 426 n n C3 C4 VPJ sing 427 n n C4 C5 VPJ sing 428 n n C5 O1 VPJ sing 429 n n O1 C2 VPJ sing 430 n n C1 H10 VPJ sing 431 n n C1 H12 VPJ sing 432 n n C2 H13 VPJ sing 433 n n C3 H14 VPJ sing 434 n n C3 H15 VPJ sing 435 n n C4 H16 VPJ sing 436 n n C4 H17 VPJ sing 437 n n C5 H18 VPJ sing 438 n n C5 H19 VPJ sing 439 n n # _atom_sites.entry_id 7JYQ _atom_sites.fract_transf_matrix[1][1] 0.022499 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008436 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017441 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017518 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 901 901 GOL GOL . C 3 VPJ A 1 902 1 VPJ LIG . D 4 HOH A 1 1001 224 HOH HOH . D 4 HOH A 2 1002 58 HOH HOH . D 4 HOH A 3 1003 112 HOH HOH . D 4 HOH A 4 1004 66 HOH HOH . D 4 HOH A 5 1005 169 HOH HOH . D 4 HOH A 6 1006 16 HOH HOH . D 4 HOH A 7 1007 74 HOH HOH . D 4 HOH A 8 1008 118 HOH HOH . D 4 HOH A 9 1009 100 HOH HOH . D 4 HOH A 10 1010 102 HOH HOH . D 4 HOH A 11 1011 45 HOH HOH . D 4 HOH A 12 1012 115 HOH HOH . D 4 HOH A 13 1013 104 HOH HOH . D 4 HOH A 14 1014 61 HOH HOH . D 4 HOH A 15 1015 70 HOH HOH . D 4 HOH A 16 1016 176 HOH HOH . D 4 HOH A 17 1017 106 HOH HOH . D 4 HOH A 18 1018 85 HOH HOH . D 4 HOH A 19 1019 3 HOH HOH . D 4 HOH A 20 1020 11 HOH HOH . D 4 HOH A 21 1021 19 HOH HOH . D 4 HOH A 22 1022 9 HOH HOH . D 4 HOH A 23 1023 120 HOH HOH . D 4 HOH A 24 1024 166 HOH HOH . D 4 HOH A 25 1025 105 HOH HOH . D 4 HOH A 26 1026 76 HOH HOH . D 4 HOH A 27 1027 53 HOH HOH . D 4 HOH A 28 1028 209 HOH HOH . D 4 HOH A 29 1029 44 HOH HOH . D 4 HOH A 30 1030 222 HOH HOH . D 4 HOH A 31 1031 128 HOH HOH . D 4 HOH A 32 1032 25 HOH HOH . D 4 HOH A 33 1033 56 HOH HOH . D 4 HOH A 34 1034 31 HOH HOH . D 4 HOH A 35 1035 96 HOH HOH . D 4 HOH A 36 1036 7 HOH HOH . D 4 HOH A 37 1037 12 HOH HOH . D 4 HOH A 38 1038 203 HOH HOH . D 4 HOH A 39 1039 83 HOH HOH . D 4 HOH A 40 1040 35 HOH HOH . D 4 HOH A 41 1041 124 HOH HOH . D 4 HOH A 42 1042 55 HOH HOH . D 4 HOH A 43 1043 111 HOH HOH . D 4 HOH A 44 1044 162 HOH HOH . D 4 HOH A 45 1045 97 HOH HOH . D 4 HOH A 46 1046 46 HOH HOH . D 4 HOH A 47 1047 134 HOH HOH . D 4 HOH A 48 1048 78 HOH HOH . D 4 HOH A 49 1049 57 HOH HOH . D 4 HOH A 50 1050 10 HOH HOH . D 4 HOH A 51 1051 41 HOH HOH . D 4 HOH A 52 1052 153 HOH HOH . D 4 HOH A 53 1053 79 HOH HOH . D 4 HOH A 54 1054 71 HOH HOH . D 4 HOH A 55 1055 36 HOH HOH . D 4 HOH A 56 1056 59 HOH HOH . D 4 HOH A 57 1057 131 HOH HOH . D 4 HOH A 58 1058 88 HOH HOH . D 4 HOH A 59 1059 69 HOH HOH . D 4 HOH A 60 1060 65 HOH HOH . D 4 HOH A 61 1061 18 HOH HOH . D 4 HOH A 62 1062 51 HOH HOH . D 4 HOH A 63 1063 68 HOH HOH . D 4 HOH A 64 1064 193 HOH HOH . D 4 HOH A 65 1065 89 HOH HOH . D 4 HOH A 66 1066 6 HOH HOH . D 4 HOH A 67 1067 2 HOH HOH . D 4 HOH A 68 1068 8 HOH HOH . D 4 HOH A 69 1069 38 HOH HOH . D 4 HOH A 70 1070 77 HOH HOH . D 4 HOH A 71 1071 194 HOH HOH . D 4 HOH A 72 1072 52 HOH HOH . D 4 HOH A 73 1073 49 HOH HOH . D 4 HOH A 74 1074 64 HOH HOH . D 4 HOH A 75 1075 47 HOH HOH . D 4 HOH A 76 1076 23 HOH HOH . D 4 HOH A 77 1077 72 HOH HOH . D 4 HOH A 78 1078 42 HOH HOH . D 4 HOH A 79 1079 24 HOH HOH . D 4 HOH A 80 1080 1 HOH HOH . D 4 HOH A 81 1081 14 HOH HOH . D 4 HOH A 82 1082 4 HOH HOH . D 4 HOH A 83 1083 121 HOH HOH . D 4 HOH A 84 1084 22 HOH HOH . D 4 HOH A 85 1085 21 HOH HOH . D 4 HOH A 86 1086 133 HOH HOH . D 4 HOH A 87 1087 5 HOH HOH . D 4 HOH A 88 1088 13 HOH HOH . D 4 HOH A 89 1089 39 HOH HOH . D 4 HOH A 90 1090 92 HOH HOH . D 4 HOH A 91 1091 235 HOH HOH . D 4 HOH A 92 1092 139 HOH HOH . D 4 HOH A 93 1093 168 HOH HOH . D 4 HOH A 94 1094 123 HOH HOH . D 4 HOH A 95 1095 250 HOH HOH . D 4 HOH A 96 1096 95 HOH HOH . D 4 HOH A 97 1097 93 HOH HOH . D 4 HOH A 98 1098 146 HOH HOH . D 4 HOH A 99 1099 32 HOH HOH . D 4 HOH A 100 1100 15 HOH HOH . D 4 HOH A 101 1101 67 HOH HOH . D 4 HOH A 102 1102 142 HOH HOH . D 4 HOH A 103 1103 48 HOH HOH . D 4 HOH A 104 1104 103 HOH HOH . D 4 HOH A 105 1105 86 HOH HOH . D 4 HOH A 106 1106 137 HOH HOH . D 4 HOH A 107 1107 73 HOH HOH . D 4 HOH A 108 1108 43 HOH HOH . D 4 HOH A 109 1109 33 HOH HOH . D 4 HOH A 110 1110 108 HOH HOH . D 4 HOH A 111 1111 75 HOH HOH . D 4 HOH A 112 1112 107 HOH HOH . D 4 HOH A 113 1113 28 HOH HOH . D 4 HOH A 114 1114 84 HOH HOH . D 4 HOH A 115 1115 20 HOH HOH . D 4 HOH A 116 1116 17 HOH HOH . D 4 HOH A 117 1117 60 HOH HOH . D 4 HOH A 118 1118 172 HOH HOH . D 4 HOH A 119 1119 127 HOH HOH . D 4 HOH A 120 1120 54 HOH HOH . D 4 HOH A 121 1121 37 HOH HOH . D 4 HOH A 122 1122 34 HOH HOH . D 4 HOH A 123 1123 27 HOH HOH . D 4 HOH A 124 1124 257 HOH HOH . D 4 HOH A 125 1125 29 HOH HOH . D 4 HOH A 126 1126 140 HOH HOH . D 4 HOH A 127 1127 122 HOH HOH . D 4 HOH A 128 1128 160 HOH HOH . D 4 HOH A 129 1129 252 HOH HOH . D 4 HOH A 130 1130 207 HOH HOH . D 4 HOH A 131 1131 229 HOH HOH . D 4 HOH A 132 1132 204 HOH HOH . D 4 HOH A 133 1133 138 HOH HOH . D 4 HOH A 134 1134 117 HOH HOH . D 4 HOH A 135 1135 116 HOH HOH . D 4 HOH A 136 1136 180 HOH HOH . D 4 HOH A 137 1137 247 HOH HOH . D 4 HOH A 138 1138 260 HOH HOH . D 4 HOH A 139 1139 231 HOH HOH . D 4 HOH A 140 1140 259 HOH HOH . D 4 HOH A 141 1141 91 HOH HOH . D 4 HOH A 142 1142 130 HOH HOH . D 4 HOH A 143 1143 129 HOH HOH . D 4 HOH A 144 1144 232 HOH HOH . D 4 HOH A 145 1145 136 HOH HOH . D 4 HOH A 146 1146 90 HOH HOH . D 4 HOH A 147 1147 109 HOH HOH . D 4 HOH A 148 1148 113 HOH HOH . D 4 HOH A 149 1149 40 HOH HOH . D 4 HOH A 150 1150 158 HOH HOH . D 4 HOH A 151 1151 101 HOH HOH . D 4 HOH A 152 1152 186 HOH HOH . D 4 HOH A 153 1153 148 HOH HOH . D 4 HOH A 154 1154 82 HOH HOH . D 4 HOH A 155 1155 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 VPJ . . . C 3 -12.083 11.239 22.789 1 39.04 ? C10 VPJ 902 A 1 HETATM 2 C C17 VPJ . . . C 3 -14.084 15.795 19.636 1 28.63 ? C17 VPJ 902 A 1 HETATM 3 C C21 VPJ . . . C 3 -13.722 14.165 21.826 1 30.59 ? C21 VPJ 902 A 1 HETATM 4 C C22 VPJ . . . C 3 -12.625 14.773 21.238 1 30.97 ? C22 VPJ 902 A 1 HETATM 5 C C02 VPJ . . . C 3 -8.18 16.308 18.666 1 26.68 ? C02 VPJ 902 A 1 HETATM 6 C C04 VPJ . . . C 3 -8.566 14.484 20.006 1 29 ? C04 VPJ 902 A 1 HETATM 7 C C05 VPJ . . . C 3 -8 13.259 20.721 1 30.39 ? C05 VPJ 902 A 1 HETATM 8 C C07 VPJ . . . C 3 -10.345 11.556 20.968 1 36.95 ? C07 VPJ 902 A 1 HETATM 9 C C14 VPJ . . . C 3 -10.303 15.861 19.442 1 23.21 ? C14 VPJ 902 A 1 HETATM 10 C C16 VPJ . . . C 3 -12.804 15.588 20.13 1 30.62 ? C16 VPJ 902 A 1 HETATM 11 C C18 VPJ . . . C 3 -15.178 15.185 20.22 1 32.28 ? C18 VPJ 902 A 1 HETATM 12 C C19 VPJ . . . C 3 -14.991 14.371 21.323 1 30.01 ? C19 VPJ 902 A 1 HETATM 13 F F20 VPJ . . . C 3 -16.066 13.767 21.911 1 39.99 ? F20 VPJ 902 A 1 HETATM 14 N N01 VPJ . . . C 3 -7.231 17.112 17.905 1 21.02 ? N01 VPJ 902 A 1 HETATM 15 N N03 VPJ . . . C 3 -7.741 15.234 19.298 1 28.85 ? N03 VPJ 902 A 1 HETATM 16 N N08 VPJ . . . C 3 -11.582 11.316 20.549 1 33.72 ? N08 VPJ 902 A 1 HETATM 17 N N09 VPJ . . . C 3 -12.515 11.139 21.535 1 39.3 ? N09 VPJ 902 A 1 HETATM 18 N N11 VPJ . . . C 3 -12.868 11.101 24.005 1 31.92 ? N11 VPJ 902 A 1 HETATM 19 N N13 VPJ . . . C 3 -9.855 14.789 20.077 1 27.9 ? N13 VPJ 902 A 1 HETATM 20 N N15 VPJ . . . C 3 -11.699 16.262 19.469 1 26.86 ? N15 VPJ 902 A 1 HETATM 21 N N23 VPJ . . . C 3 -9.463 16.622 18.746 1 20.38 ? N23 VPJ 902 A 1 HETATM 22 S S06 VPJ . . . C 3 -8.846 11.831 19.986 1 45.29 ? S06 VPJ 902 A 1 HETATM 23 S S12 VPJ . . . C 3 -10.385 11.58 22.69 1 39.19 ? S12 VPJ 902 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #