data_7JYR # _model_server_result.job_id eZG4-sCkiKaOn18NVApC6w _model_server_result.datetime_utc '2025-02-04 09:44:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jyr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1601}' # _entry.id 7JYR # _exptl.entry_id 7JYR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.349 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{[(1R,2R)-2-(2,4-difluorophenyl)cyclopropyl]oxy}-3-(5-methyl-1H-pyrazol-3-yl)benzonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JYR _cell.length_a 51.604 _cell.length_b 56.89 _cell.length_c 103.403 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JYR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H15 F2 N3 O' _chem_comp.formula_weight 351.349 _chem_comp.id VTA _chem_comp.mon_nstd_flag . _chem_comp.name 4-{[(1R,2R)-2-(2,4-difluorophenyl)cyclopropyl]oxy}-3-(5-methyl-1H-pyrazol-3-yl)benzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F24 C23 VTA sing 385 n n C23 C22 VTA doub 386 n y C23 C25 VTA sing 387 n y N6 C2 VTA sing 388 n y N6 N5 VTA sing 389 n y C22 C21 VTA sing 390 n y C1 C2 VTA sing 391 n n C2 C3 VTA doub 392 n y C25 C26 VTA doub 393 n y N5 C4 VTA doub 394 n y C21 C20 VTA doub 395 n y C3 C4 VTA sing 396 n y C4 C8 VTA sing 397 n n C26 C20 VTA sing 398 n y C26 F27 VTA sing 399 n n C20 C18 VTA sing 400 n n C8 C9 VTA doub 401 n y C8 C13 VTA sing 402 n y C9 C10 VTA sing 403 n y C13 O14 VTA sing 404 n n C13 C12 VTA doub 405 n y O14 C15 VTA sing 406 n n C10 C28 VTA sing 407 n n C10 C11 VTA doub 408 n y C28 N29 VTA trip 409 n n C18 C15 VTA sing 410 n n C18 C17 VTA sing 411 n n C12 C11 VTA sing 412 n y C15 C17 VTA sing 413 n n C15 H1 VTA sing 414 n n C17 H2 VTA sing 415 n n C17 H3 VTA sing 416 n n C21 H4 VTA sing 417 n n C22 H5 VTA sing 418 n n C1 H6 VTA sing 419 n n C1 H7 VTA sing 420 n n C1 H8 VTA sing 421 n n C11 H9 VTA sing 422 n n C12 H10 VTA sing 423 n n C18 H11 VTA sing 424 n n C25 H12 VTA sing 425 n n C3 H13 VTA sing 426 n n C9 H14 VTA sing 427 n n N6 H15 VTA sing 428 n n # _atom_sites.entry_id 7JYR _atom_sites.fract_transf_matrix[1][1] 0.019378 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017578 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009671 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VTA A 1 1601 1601 VTA LIG . C 3 EDO A 1 1602 1701 EDO EDO . D 3 EDO A 1 1603 1901 EDO EDO . E 4 HOH A 1 1701 64 HOH HOH . E 4 HOH A 2 1702 62 HOH HOH . E 4 HOH A 3 1703 37 HOH HOH . E 4 HOH A 4 1704 85 HOH HOH . E 4 HOH A 5 1705 66 HOH HOH . E 4 HOH A 6 1706 57 HOH HOH . E 4 HOH A 7 1707 87 HOH HOH . E 4 HOH A 8 1708 28 HOH HOH . E 4 HOH A 9 1709 51 HOH HOH . E 4 HOH A 10 1710 53 HOH HOH . E 4 HOH A 11 1711 72 HOH HOH . E 4 HOH A 12 1712 82 HOH HOH . E 4 HOH A 13 1713 71 HOH HOH . E 4 HOH A 14 1714 23 HOH HOH . E 4 HOH A 15 1715 13 HOH HOH . E 4 HOH A 16 1716 5 HOH HOH . E 4 HOH A 17 1717 61 HOH HOH . E 4 HOH A 18 1718 47 HOH HOH . E 4 HOH A 19 1719 15 HOH HOH . E 4 HOH A 20 1720 75 HOH HOH . E 4 HOH A 21 1721 46 HOH HOH . E 4 HOH A 22 1722 80 HOH HOH . E 4 HOH A 23 1723 25 HOH HOH . E 4 HOH A 24 1724 7 HOH HOH . E 4 HOH A 25 1725 50 HOH HOH . E 4 HOH A 26 1726 36 HOH HOH . E 4 HOH A 27 1727 30 HOH HOH . E 4 HOH A 28 1728 68 HOH HOH . E 4 HOH A 29 1729 18 HOH HOH . E 4 HOH A 30 1730 35 HOH HOH . E 4 HOH A 31 1731 14 HOH HOH . E 4 HOH A 32 1732 2 HOH HOH . E 4 HOH A 33 1733 48 HOH HOH . E 4 HOH A 34 1734 73 HOH HOH . E 4 HOH A 35 1735 86 HOH HOH . E 4 HOH A 36 1736 45 HOH HOH . E 4 HOH A 37 1737 65 HOH HOH . E 4 HOH A 38 1738 21 HOH HOH . E 4 HOH A 39 1739 24 HOH HOH . E 4 HOH A 40 1740 27 HOH HOH . E 4 HOH A 41 1741 60 HOH HOH . E 4 HOH A 42 1742 49 HOH HOH . E 4 HOH A 43 1743 84 HOH HOH . E 4 HOH A 44 1744 59 HOH HOH . E 4 HOH A 45 1745 31 HOH HOH . E 4 HOH A 46 1746 81 HOH HOH . E 4 HOH A 47 1747 67 HOH HOH . E 4 HOH A 48 1748 39 HOH HOH . E 4 HOH A 49 1749 9 HOH HOH . E 4 HOH A 50 1750 55 HOH HOH . E 4 HOH A 51 1751 42 HOH HOH . E 4 HOH A 52 1752 38 HOH HOH . E 4 HOH A 53 1753 79 HOH HOH . E 4 HOH A 54 1754 6 HOH HOH . E 4 HOH A 55 1755 16 HOH HOH . E 4 HOH A 56 1756 70 HOH HOH . E 4 HOH A 57 1757 34 HOH HOH . E 4 HOH A 58 1758 19 HOH HOH . E 4 HOH A 59 1759 20 HOH HOH . E 4 HOH A 60 1760 76 HOH HOH . E 4 HOH A 61 1761 41 HOH HOH . E 4 HOH A 62 1762 40 HOH HOH . E 4 HOH A 63 1763 32 HOH HOH . E 4 HOH A 64 1764 52 HOH HOH . E 4 HOH A 65 1765 22 HOH HOH . E 4 HOH A 66 1766 33 HOH HOH . E 4 HOH A 67 1767 77 HOH HOH . E 4 HOH A 68 1768 56 HOH HOH . E 4 HOH A 69 1769 83 HOH HOH . E 4 HOH A 70 1770 74 HOH HOH . E 4 HOH A 71 1771 58 HOH HOH . E 4 HOH A 72 1772 3 HOH HOH . E 4 HOH A 73 1773 43 HOH HOH . E 4 HOH A 74 1774 54 HOH HOH . E 4 HOH A 75 1775 69 HOH HOH . E 4 HOH A 76 1776 44 HOH HOH . E 4 HOH A 77 1777 63 HOH HOH . E 4 HOH A 78 1778 10 HOH HOH . E 4 HOH A 79 1779 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 VTA . . . B 2 23.103 -11.372 -9.176 1 46.32 ? C4 VTA 1601 A 1 HETATM 2 C C8 VTA . . . B 2 23.223 -10.144 -8.347 1 48.26 ? C8 VTA 1601 A 1 HETATM 3 C C10 VTA . . . B 2 24.621 -8.338 -7.563 1 53.64 ? C10 VTA 1601 A 1 HETATM 4 C C13 VTA . . . B 2 22.153 -9.627 -7.596 1 49.61 ? C13 VTA 1601 A 1 HETATM 5 C C15 VTA . . . B 2 19.979 -9.659 -6.676 1 69.25 ? C15 VTA 1601 A 1 HETATM 6 C C17 VTA . . . B 2 18.997 -10.607 -5.982 1 81.4 ? C17 VTA 1601 A 1 HETATM 7 C C20 VTA . . . B 2 18.056 -10.143 -8.414 1 55.74 ? C20 VTA 1601 A 1 HETATM 8 C C21 VTA . . . B 2 17.48 -9.23 -9.277 1 50.53 ? C21 VTA 1601 A 1 HETATM 9 C C22 VTA . . . B 2 17.052 -9.613 -10.533 1 47.11 ? C22 VTA 1601 A 1 HETATM 10 C C26 VTA . . . B 2 18.197 -11.468 -8.82 1 53.77 ? C26 VTA 1601 A 1 HETATM 11 C C28 VTA . . . B 2 25.889 -7.674 -7.544 1 52.68 ? C28 VTA 1601 A 1 HETATM 12 C C1 VTA . . . B 2 21.455 -14.407 -10.507 1 47.1 ? C1 VTA 1601 A 1 HETATM 13 C C11 VTA . . . B 2 23.553 -7.83 -6.82 1 53.4 ? C11 VTA 1601 A 1 HETATM 14 C C12 VTA . . . B 2 22.336 -8.474 -6.842 1 51.62 ? C12 VTA 1601 A 1 HETATM 15 C C18 VTA . . . B 2 18.494 -9.635 -7.055 1 58.95 ? C18 VTA 1601 A 1 HETATM 16 C C2 VTA . . . B 2 22.329 -13.241 -10.122 1 42.69 ? C2 VTA 1601 A 1 HETATM 17 C C23 VTA . . . B 2 17.195 -10.928 -10.935 1 45.34 ? C23 VTA 1601 A 1 HETATM 18 C C25 VTA . . . B 2 17.767 -11.851 -10.079 1 48.85 ? C25 VTA 1601 A 1 HETATM 19 C C3 VTA . . . B 2 22.012 -12.262 -9.245 1 45.65 ? C3 VTA 1601 A 1 HETATM 20 C C9 VTA . . . B 2 24.45 -9.494 -8.322 1 48.56 ? C9 VTA 1601 A 1 HETATM 21 F F24 VTA . . . B 2 16.777 -11.306 -12.162 1 47.94 ? F24 VTA 1601 A 1 HETATM 22 F F27 VTA . . . B 2 18.749 -12.405 -8.02 1 55.45 ? F27 VTA 1601 A 1 HETATM 23 N N29 VTA . . . B 2 26.894 -7.146 -7.528 1 51.25 ? N29 VTA 1601 A 1 HETATM 24 N N5 VTA . . . B 2 24.034 -11.818 -9.992 1 42.64 ? N5 VTA 1601 A 1 HETATM 25 N N6 VTA . . . B 2 23.567 -12.992 -10.596 1 42.64 ? N6 VTA 1601 A 1 HETATM 26 O O14 VTA . . . B 2 20.932 -10.223 -7.584 1 53.04 ? O14 VTA 1601 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #