data_7JYT # _model_server_result.job_id pE5cQvKVO8-yNIiZuks9YQ _model_server_result.datetime_utc '2024-11-24 00:36:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jyt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 7JYT # _exptl.entry_id 7JYT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JYT _cell.length_a 51.826 _cell.length_b 57.128 _cell.length_c 103.561 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JYT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7JYT _atom_sites.fract_transf_matrix[1][1] 0.019295 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017505 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009656 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 1501 1501 GOL GOL . C 3 VRM A 1 1502 2000 VRM LIG . D 4 HOH A 1 1601 40 HOH HOH . D 4 HOH A 2 1602 30 HOH HOH . D 4 HOH A 3 1603 45 HOH HOH . D 4 HOH A 4 1604 46 HOH HOH . D 4 HOH A 5 1605 19 HOH HOH . D 4 HOH A 6 1606 60 HOH HOH . D 4 HOH A 7 1607 2 HOH HOH . D 4 HOH A 8 1608 20 HOH HOH . D 4 HOH A 9 1609 53 HOH HOH . D 4 HOH A 10 1610 51 HOH HOH . D 4 HOH A 11 1611 33 HOH HOH . D 4 HOH A 12 1612 9 HOH HOH . D 4 HOH A 13 1613 18 HOH HOH . D 4 HOH A 14 1614 57 HOH HOH . D 4 HOH A 15 1615 66 HOH HOH . D 4 HOH A 16 1616 15 HOH HOH . D 4 HOH A 17 1617 3 HOH HOH . D 4 HOH A 18 1618 47 HOH HOH . D 4 HOH A 19 1619 48 HOH HOH . D 4 HOH A 20 1620 59 HOH HOH . D 4 HOH A 21 1621 4 HOH HOH . D 4 HOH A 22 1622 58 HOH HOH . D 4 HOH A 23 1623 37 HOH HOH . D 4 HOH A 24 1624 17 HOH HOH . D 4 HOH A 25 1625 31 HOH HOH . D 4 HOH A 26 1626 29 HOH HOH . D 4 HOH A 27 1627 50 HOH HOH . D 4 HOH A 28 1628 43 HOH HOH . D 4 HOH A 29 1629 38 HOH HOH . D 4 HOH A 30 1630 21 HOH HOH . D 4 HOH A 31 1631 24 HOH HOH . D 4 HOH A 32 1632 55 HOH HOH . D 4 HOH A 33 1633 26 HOH HOH . D 4 HOH A 34 1634 5 HOH HOH . D 4 HOH A 35 1635 11 HOH HOH . D 4 HOH A 36 1636 13 HOH HOH . D 4 HOH A 37 1637 32 HOH HOH . D 4 HOH A 38 1638 12 HOH HOH . D 4 HOH A 39 1639 63 HOH HOH . D 4 HOH A 40 1640 10 HOH HOH . D 4 HOH A 41 1641 42 HOH HOH . D 4 HOH A 42 1642 64 HOH HOH . D 4 HOH A 43 1643 36 HOH HOH . D 4 HOH A 44 1644 65 HOH HOH . D 4 HOH A 45 1645 41 HOH HOH . D 4 HOH A 46 1646 49 HOH HOH . D 4 HOH A 47 1647 6 HOH HOH . D 4 HOH A 48 1648 69 HOH HOH . D 4 HOH A 49 1649 23 HOH HOH . D 4 HOH A 50 1650 25 HOH HOH . D 4 HOH A 51 1651 44 HOH HOH . D 4 HOH A 52 1652 39 HOH HOH . D 4 HOH A 53 1653 54 HOH HOH . D 4 HOH A 54 1654 27 HOH HOH . D 4 HOH A 55 1655 14 HOH HOH . D 4 HOH A 56 1656 68 HOH HOH . D 4 HOH A 57 1657 35 HOH HOH . D 4 HOH A 58 1658 34 HOH HOH . D 4 HOH A 59 1659 28 HOH HOH . D 4 HOH A 60 1660 67 HOH HOH . D 4 HOH A 61 1661 62 HOH HOH . D 4 HOH A 62 1662 61 HOH HOH . D 4 HOH A 63 1663 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 25.018 -23.988 -18.46 1 61.92 ? C1 GOL 1501 A 1 HETATM 2 O O1 GOL . . . B 2 25.007 -25.271 -19.017 1 73.42 ? O1 GOL 1501 A 1 HETATM 3 C C2 GOL . . . B 2 23.953 -23.15 -19.224 1 60.25 ? C2 GOL 1501 A 1 HETATM 4 O O2 GOL . . . B 2 23.304 -22.225 -18.399 1 49.28 ? O2 GOL 1501 A 1 HETATM 5 C C3 GOL . . . B 2 24.741 -22.479 -20.377 1 50.18 ? C3 GOL 1501 A 1 HETATM 6 O O3 GOL . . . B 2 23.834 -21.721 -21.115 1 42.95 ? O3 GOL 1501 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #