data_7JYT
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_model_server_result.job_id            JaujFwJmZlNLppMVnhbBVw 
_model_server_result.datetime_utc      '2024-11-04 18:00:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7jyt 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1501}' 
#
_entry.id    7JYT 
#
_exptl.entry_id    7JYT 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7JYT 
_cell.length_a            51.826 
_cell.length_b            57.128 
_cell.length_c            103.561 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 7JYT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
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_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
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_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     7JYT 
_atom_sites.fract_transf_matrix[1][1]    0.019295 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017505 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009656 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 1501 1501 GOL GOL . 
C 3 VRM A 1 1502 2000 VRM LIG . 
D 4 HOH A 1 1601 40 HOH HOH . 
D 4 HOH A 2 1602 30 HOH HOH . 
D 4 HOH A 3 1603 45 HOH HOH . 
D 4 HOH A 4 1604 46 HOH HOH . 
D 4 HOH A 5 1605 19 HOH HOH . 
D 4 HOH A 6 1606 60 HOH HOH . 
D 4 HOH A 7 1607 2 HOH HOH . 
D 4 HOH A 8 1608 20 HOH HOH . 
D 4 HOH A 9 1609 53 HOH HOH . 
D 4 HOH A 10 1610 51 HOH HOH . 
D 4 HOH A 11 1611 33 HOH HOH . 
D 4 HOH A 12 1612 9 HOH HOH . 
D 4 HOH A 13 1613 18 HOH HOH . 
D 4 HOH A 14 1614 57 HOH HOH . 
D 4 HOH A 15 1615 66 HOH HOH . 
D 4 HOH A 16 1616 15 HOH HOH . 
D 4 HOH A 17 1617 3 HOH HOH . 
D 4 HOH A 18 1618 47 HOH HOH . 
D 4 HOH A 19 1619 48 HOH HOH . 
D 4 HOH A 20 1620 59 HOH HOH . 
D 4 HOH A 21 1621 4 HOH HOH . 
D 4 HOH A 22 1622 58 HOH HOH . 
D 4 HOH A 23 1623 37 HOH HOH . 
D 4 HOH A 24 1624 17 HOH HOH . 
D 4 HOH A 25 1625 31 HOH HOH . 
D 4 HOH A 26 1626 29 HOH HOH . 
D 4 HOH A 27 1627 50 HOH HOH . 
D 4 HOH A 28 1628 43 HOH HOH . 
D 4 HOH A 29 1629 38 HOH HOH . 
D 4 HOH A 30 1630 21 HOH HOH . 
D 4 HOH A 31 1631 24 HOH HOH . 
D 4 HOH A 32 1632 55 HOH HOH . 
D 4 HOH A 33 1633 26 HOH HOH . 
D 4 HOH A 34 1634 5 HOH HOH . 
D 4 HOH A 35 1635 11 HOH HOH . 
D 4 HOH A 36 1636 13 HOH HOH . 
D 4 HOH A 37 1637 32 HOH HOH . 
D 4 HOH A 38 1638 12 HOH HOH . 
D 4 HOH A 39 1639 63 HOH HOH . 
D 4 HOH A 40 1640 10 HOH HOH . 
D 4 HOH A 41 1641 42 HOH HOH . 
D 4 HOH A 42 1642 64 HOH HOH . 
D 4 HOH A 43 1643 36 HOH HOH . 
D 4 HOH A 44 1644 65 HOH HOH . 
D 4 HOH A 45 1645 41 HOH HOH . 
D 4 HOH A 46 1646 49 HOH HOH . 
D 4 HOH A 47 1647 6 HOH HOH . 
D 4 HOH A 48 1648 69 HOH HOH . 
D 4 HOH A 49 1649 23 HOH HOH . 
D 4 HOH A 50 1650 25 HOH HOH . 
D 4 HOH A 51 1651 44 HOH HOH . 
D 4 HOH A 52 1652 39 HOH HOH . 
D 4 HOH A 53 1653 54 HOH HOH . 
D 4 HOH A 54 1654 27 HOH HOH . 
D 4 HOH A 55 1655 14 HOH HOH . 
D 4 HOH A 56 1656 68 HOH HOH . 
D 4 HOH A 57 1657 35 HOH HOH . 
D 4 HOH A 58 1658 34 HOH HOH . 
D 4 HOH A 59 1659 28 HOH HOH . 
D 4 HOH A 60 1660 67 HOH HOH . 
D 4 HOH A 61 1661 62 HOH HOH . 
D 4 HOH A 62 1662 61 HOH HOH . 
D 4 HOH A 63 1663 52 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 25.018 -23.988 -18.46 1 61.92 ? C1 GOL 1501 A 1 
HETATM 2 O O1 GOL . . . B 2 25.007 -25.271 -19.017 1 73.42 ? O1 GOL 1501 A 1 
HETATM 3 C C2 GOL . . . B 2 23.953 -23.15 -19.224 1 60.25 ? C2 GOL 1501 A 1 
HETATM 4 O O2 GOL . . . B 2 23.304 -22.225 -18.399 1 49.28 ? O2 GOL 1501 A 1 
HETATM 5 C C3 GOL . . . B 2 24.741 -22.479 -20.377 1 50.18 ? C3 GOL 1501 A 1 
HETATM 6 O O3 GOL . . . B 2 23.834 -21.721 -21.115 1 42.95 ? O3 GOL 1501 A 1 
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_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
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