data_7JYT # _model_server_result.job_id F_leq7dl_nMpNyChN-wKVA _model_server_result.datetime_utc '2024-11-04 18:07:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jyt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1502}' # _entry.id 7JYT # _exptl.entry_id 7JYT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 159.188 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(3-methyl-1H-pyrazol-5-yl)pyridine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JYT _cell.length_a 51.826 _cell.length_b 57.128 _cell.length_c 103.561 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JYT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H9 N3' _chem_comp.formula_weight 159.188 _chem_comp.id VRM _chem_comp.mon_nstd_flag . _chem_comp.name 3-(3-methyl-1H-pyrazol-5-yl)pyridine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N7 C2 VRM doub 389 n y N7 N5 VRM sing 390 n y C1 C2 VRM sing 391 n n C2 C3 VRM sing 392 n y N5 C4 VRM sing 393 n y C4 C3 VRM doub 394 n y C4 C8 VRM sing 395 n n C8 C13 VRM doub 396 n y C8 C9 VRM sing 397 n y C13 N12 VRM sing 398 n y C9 C10 VRM doub 399 n y N12 C11 VRM doub 400 n y C10 C11 VRM sing 401 n y C10 H101 VRM sing 402 n n C13 H131 VRM sing 403 n n C1 H13 VRM sing 404 n n C1 H12 VRM sing 405 n n C1 H11 VRM sing 406 n n C11 H111 VRM sing 407 n n C3 H31 VRM sing 408 n n C9 H91 VRM sing 409 n n N5 H1 VRM sing 410 n n # _atom_sites.entry_id 7JYT _atom_sites.fract_transf_matrix[1][1] 0.019295 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017505 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009656 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 1501 1501 GOL GOL . C 3 VRM A 1 1502 2000 VRM LIG . D 4 HOH A 1 1601 40 HOH HOH . D 4 HOH A 2 1602 30 HOH HOH . D 4 HOH A 3 1603 45 HOH HOH . D 4 HOH A 4 1604 46 HOH HOH . D 4 HOH A 5 1605 19 HOH HOH . D 4 HOH A 6 1606 60 HOH HOH . D 4 HOH A 7 1607 2 HOH HOH . D 4 HOH A 8 1608 20 HOH HOH . D 4 HOH A 9 1609 53 HOH HOH . D 4 HOH A 10 1610 51 HOH HOH . D 4 HOH A 11 1611 33 HOH HOH . D 4 HOH A 12 1612 9 HOH HOH . D 4 HOH A 13 1613 18 HOH HOH . D 4 HOH A 14 1614 57 HOH HOH . D 4 HOH A 15 1615 66 HOH HOH . D 4 HOH A 16 1616 15 HOH HOH . D 4 HOH A 17 1617 3 HOH HOH . D 4 HOH A 18 1618 47 HOH HOH . D 4 HOH A 19 1619 48 HOH HOH . D 4 HOH A 20 1620 59 HOH HOH . D 4 HOH A 21 1621 4 HOH HOH . D 4 HOH A 22 1622 58 HOH HOH . D 4 HOH A 23 1623 37 HOH HOH . D 4 HOH A 24 1624 17 HOH HOH . D 4 HOH A 25 1625 31 HOH HOH . D 4 HOH A 26 1626 29 HOH HOH . D 4 HOH A 27 1627 50 HOH HOH . D 4 HOH A 28 1628 43 HOH HOH . D 4 HOH A 29 1629 38 HOH HOH . D 4 HOH A 30 1630 21 HOH HOH . D 4 HOH A 31 1631 24 HOH HOH . D 4 HOH A 32 1632 55 HOH HOH . D 4 HOH A 33 1633 26 HOH HOH . D 4 HOH A 34 1634 5 HOH HOH . D 4 HOH A 35 1635 11 HOH HOH . D 4 HOH A 36 1636 13 HOH HOH . D 4 HOH A 37 1637 32 HOH HOH . D 4 HOH A 38 1638 12 HOH HOH . D 4 HOH A 39 1639 63 HOH HOH . D 4 HOH A 40 1640 10 HOH HOH . D 4 HOH A 41 1641 42 HOH HOH . D 4 HOH A 42 1642 64 HOH HOH . D 4 HOH A 43 1643 36 HOH HOH . D 4 HOH A 44 1644 65 HOH HOH . D 4 HOH A 45 1645 41 HOH HOH . D 4 HOH A 46 1646 49 HOH HOH . D 4 HOH A 47 1647 6 HOH HOH . D 4 HOH A 48 1648 69 HOH HOH . D 4 HOH A 49 1649 23 HOH HOH . D 4 HOH A 50 1650 25 HOH HOH . D 4 HOH A 51 1651 44 HOH HOH . D 4 HOH A 52 1652 39 HOH HOH . D 4 HOH A 53 1653 54 HOH HOH . D 4 HOH A 54 1654 27 HOH HOH . D 4 HOH A 55 1655 14 HOH HOH . D 4 HOH A 56 1656 68 HOH HOH . D 4 HOH A 57 1657 35 HOH HOH . D 4 HOH A 58 1658 34 HOH HOH . D 4 HOH A 59 1659 28 HOH HOH . D 4 HOH A 60 1660 67 HOH HOH . D 4 HOH A 61 1661 62 HOH HOH . D 4 HOH A 62 1662 61 HOH HOH . D 4 HOH A 63 1663 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 VRM . . . C 3 23.085 -11.473 -9.06 1 48.23 ? C4 VRM 1502 A 1 HETATM 2 C C8 VRM . . . C 3 23.193 -10.158 -8.289 1 53.06 ? C8 VRM 1502 A 1 HETATM 3 C C10 VRM . . . C 3 22.221 -8.369 -7.056 1 61.02 ? C10 VRM 1502 A 1 HETATM 4 N N12 VRM . . . C 3 24.541 -8.397 -7.488 1 59.8 ? N12 VRM 1502 A 1 HETATM 5 C C13 VRM . . . C 3 24.423 -9.537 -8.143 1 57.14 ? C13 VRM 1502 A 1 HETATM 6 C C1 VRM . . . C 3 21.526 -14.635 -10.261 1 52.9 ? C1 VRM 1502 A 1 HETATM 7 C C11 VRM . . . C 3 23.487 -7.814 -6.952 1 63.88 ? C11 VRM 1502 A 1 HETATM 8 C C2 VRM . . . C 3 22.367 -13.407 -9.918 1 41.16 ? C2 VRM 1502 A 1 HETATM 9 C C3 VRM . . . C 3 21.984 -12.358 -9.05 1 45.93 ? C3 VRM 1502 A 1 HETATM 10 C C9 VRM . . . C 3 22.062 -9.567 -7.74 1 54.46 ? C9 VRM 1502 A 1 HETATM 11 N N5 VRM . . . C 3 23.986 -11.987 -9.86 1 41.18 ? N5 VRM 1502 A 1 HETATM 12 N N7 VRM . . . C 3 23.563 -13.138 -10.371 1 37.29 ? N7 VRM 1502 A 1 HETATM 13 H H101 VRM . . . C 3 21.367 -7.874 -6.61 1 73.26 ? H101 VRM 1502 A 1 HETATM 14 H H131 VRM . . . C 3 25.304 -9.996 -8.573 1 68.6 ? H131 VRM 1502 A 1 HETATM 15 H H13 VRM . . . C 3 22.056 -15.245 -10.987 1 63.51 ? H13 VRM 1502 A 1 HETATM 16 H H12 VRM . . . C 3 20.576 -14.318 -10.68 1 63.51 ? H12 VRM 1502 A 1 HETATM 17 H H11 VRM . . . C 3 21.35 -15.216 -9.36 1 63.51 ? H11 VRM 1502 A 1 HETATM 18 H H111 VRM . . . C 3 23.613 -6.88 -6.418 1 76.69 ? H111 VRM 1502 A 1 HETATM 19 H H31 VRM . . . C 3 21.056 -12.256 -8.502 1 55.15 ? H31 VRM 1502 A 1 HETATM 20 H H91 VRM . . . C 3 21.087 -10.027 -7.842 1 65.39 ? H91 VRM 1502 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #