data_7JZ2 # _model_server_result.job_id AjF8zohTgzDvQ9NZ_UXQ-A _model_server_result.datetime_utc '2024-11-04 22:47:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jz2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"BA","auth_seq_id":1201}' # _entry.id 7JZ2 # _exptl.entry_id 7JZ2 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 318.407 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-2 _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 T N N ? 12 BA N N ? 12 JA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O MET 356 A MET 356 1_555 N NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc2 A O GLY 358 A GLY 358 1_555 N NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc3 A O GLU 388 A GLU 388 1_555 N NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc4 B OD1 ASP 63 B ASP 63 1_555 O FE1 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc5 B N ILE 209 B ILE 209 1_555 Q FE3 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc6 C NE2 HIS 84 C HIS 84 1_555 S FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc7 D NE2 HIS 71 D HIS 71 1_555 S FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc8 E O MET 356 E MET 356 1_555 V NA NA . E NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc9 E O GLY 358 E GLY 358 1_555 V NA NA . E NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc10 E O GLU 388 E GLU 388 1_555 V NA NA . E NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc11 F OD1 ASP 63 F ASP 63 1_555 W FE1 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc12 F N ILE 209 F ILE 209 1_555 Y FE3 F3S . F F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc13 G NE2 HIS 84 G HIS 84 1_555 Z FE HEM . G HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc14 I O MET 356 I MET 356 1_555 DA NA NA . I NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc15 I O GLY 358 I GLY 358 1_555 DA NA NA . I NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc16 I O GLU 388 I GLU 388 1_555 DA NA NA . I NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc17 J OD1 ASP 63 J ASP 63 1_555 EA FE1 FES . J FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc18 J N ILE 209 J ILE 209 1_555 GA FE3 F3S . J F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc19 K NE2 HIS 84 K HIS 84 1_555 HA FE HEM . K HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? metalc ? metalc20 HA FE HEM . K HEM 201 1_555 L NE2 HIS 71 L HIS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? # _chem_comp.formula 'C19 H26 O4' _chem_comp.formula_weight 318.407 _chem_comp.id UQ2 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-2 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 UQ2 sing 686 n n C1 C6 UQ2 sing 687 n n C1 O1 UQ2 doub 688 n n C2 C3 UQ2 doub 689 n n C2 O2 UQ2 sing 690 n n C3 C4 UQ2 sing 691 n n C3 O3 UQ2 sing 692 n n C4 C5 UQ2 sing 693 n n C4 O4 UQ2 doub 694 n n C5 C6 UQ2 doub 695 n n C5 CM5 UQ2 sing 696 n n C6 C7 UQ2 sing 697 n n CM2 O2 UQ2 sing 698 n n CM2 H2M1 UQ2 sing 699 n n CM2 H2M2 UQ2 sing 700 n n CM2 H2M3 UQ2 sing 701 n n CM3 O3 UQ2 sing 702 n n CM3 H3M1 UQ2 sing 703 n n CM3 H3M2 UQ2 sing 704 n n CM3 H3M3 UQ2 sing 705 n n CM5 H5M1 UQ2 sing 706 n n CM5 H5M2 UQ2 sing 707 n n CM5 H5M3 UQ2 sing 708 n n C7 C8 UQ2 sing 709 n n C7 H71 UQ2 sing 710 n n C7 H72 UQ2 sing 711 n n C8 C9 UQ2 doub 712 e n C8 H8 UQ2 sing 713 n n C9 C10 UQ2 sing 714 n n C9 C11 UQ2 sing 715 n n C10 H101 UQ2 sing 716 n n C10 H102 UQ2 sing 717 n n C10 H103 UQ2 sing 718 n n C11 C12 UQ2 sing 719 n n C11 H111 UQ2 sing 720 n n C11 H112 UQ2 sing 721 n n C12 C13 UQ2 sing 722 n n C12 H121 UQ2 sing 723 n n C12 H122 UQ2 sing 724 n n C13 C14 UQ2 doub 725 n n C13 H13 UQ2 sing 726 n n C14 C15 UQ2 sing 727 n n C14 C16 UQ2 sing 728 n n C15 H151 UQ2 sing 729 n n C15 H152 UQ2 sing 730 n n C15 H153 UQ2 sing 731 n n C16 H161 UQ2 sing 732 n n C16 H162 UQ2 sing 733 n n C16 H163 UQ2 sing 734 n n # _atom_sites.entry_id 7JZ2 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 5 FAD A 1 601 601 FAD FAD . N 6 NA A 1 602 1590 NA NA . O 7 FES B 1 301 302 FES FES . P 8 SF4 B 1 302 303 SF4 SF4 . Q 9 F3S B 1 303 304 F3S F3S . R 10 3PE C 1 1301 1301 3PE 3PE . S 11 HEM D 1 201 1129 HEM HEM . T 12 UQ2 D 1 202 1201 UQ2 UQ2 . U 5 FAD E 1 601 601 FAD FAD . V 6 NA E 1 602 1590 NA NA . W 7 FES F 1 301 302 FES FES . X 8 SF4 F 1 302 303 SF4 SF4 . Y 9 F3S F 1 303 304 F3S F3S . Z 11 HEM G 1 201 1129 HEM HEM . AA 10 3PE G 1 202 1301 3PE 3PE . BA 12 UQ2 H 1 1201 1201 UQ2 UQ2 . CA 5 FAD I 1 601 601 FAD FAD . DA 6 NA I 1 602 1590 NA NA . EA 7 FES J 1 301 302 FES FES . FA 8 SF4 J 1 302 303 SF4 SF4 . GA 9 F3S J 1 303 304 F3S F3S . HA 11 HEM K 1 201 1129 HEM HEM . IA 10 3PE K 1 202 1301 3PE 3PE . JA 12 UQ2 L 1 1201 1201 UQ2 UQ2 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 UQ2 . . . BA 12 159.534 187.315 210.847 1 28.15 ? C1 UQ2 1201 H 1 HETATM 2 C C2 UQ2 . . . BA 12 160.171 185.972 210.511 1 28.15 ? C2 UQ2 1201 H 1 HETATM 3 C C3 UQ2 . . . BA 12 159.301 184.814 210.043 1 28.15 ? C3 UQ2 1201 H 1 HETATM 4 C C4 UQ2 . . . BA 12 157.792 184.992 209.909 1 28.15 ? C4 UQ2 1201 H 1 HETATM 5 C C5 UQ2 . . . BA 12 157.149 186.337 210.242 1 28.15 ? C5 UQ2 1201 H 1 HETATM 6 C C6 UQ2 . . . BA 12 158.022 187.505 210.715 1 28.15 ? C6 UQ2 1201 H 1 HETATM 7 C CM2 UQ2 . . . BA 12 162.261 185.88 209.432 1 28.15 ? CM2 UQ2 1201 H 1 HETATM 8 C CM3 UQ2 . . . BA 12 159.479 182.538 210.564 1 28.15 ? CM3 UQ2 1201 H 1 HETATM 9 C CM5 UQ2 . . . BA 12 155.636 186.498 210.103 1 28.15 ? CM5 UQ2 1201 H 1 HETATM 10 C C7 UQ2 . . . BA 12 157.405 188.86 211.056 1 28.15 ? C7 UQ2 1201 H 1 HETATM 11 C C8 UQ2 . . . BA 12 157.944 189.32 212.412 1 28.15 ? C8 UQ2 1201 H 1 HETATM 12 C C9 UQ2 . . . BA 12 158.512 190.498 212.599 1 28.15 ? C9 UQ2 1201 H 1 HETATM 13 C C10 UQ2 . . . BA 12 158.664 191.513 211.463 1 28.15 ? C10 UQ2 1201 H 1 HETATM 14 C C11 UQ2 . . . BA 12 159.026 190.876 213.989 1 28.15 ? C11 UQ2 1201 H 1 HETATM 15 C C12 UQ2 . . . BA 12 160.042 189.85 214.495 1 28.15 ? C12 UQ2 1201 H 1 HETATM 16 C C13 UQ2 . . . BA 12 160.09 189.909 216.024 1 28.15 ? C13 UQ2 1201 H 1 HETATM 17 C C14 UQ2 . . . BA 12 161.161 190.298 216.697 1 28.15 ? C14 UQ2 1201 H 1 HETATM 18 C C15 UQ2 . . . BA 12 162.455 190.721 216.006 1 28.15 ? C15 UQ2 1201 H 1 HETATM 19 C C16 UQ2 . . . BA 12 161.105 190.322 218.223 1 28.15 ? C16 UQ2 1201 H 1 HETATM 20 O O1 UQ2 . . . BA 12 160.218 188.211 211.21 1 28.15 ? O1 UQ2 1201 H 1 HETATM 21 O O2 UQ2 . . . BA 12 161.554 185.8 210.635 1 28.15 ? O2 UQ2 1201 H 1 HETATM 22 O O3 UQ2 . . . BA 12 159.891 183.584 209.735 1 28.15 ? O3 UQ2 1201 H 1 HETATM 23 O O4 UQ2 . . . BA 12 157.119 184.087 209.544 1 28.15 ? O4 UQ2 1201 H 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #