data_7JZ2
#
_model_server_result.job_id            3s17caZqWAI9JCmNRcjB3A 
_model_server_result.datetime_utc      '2024-11-04 22:49:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7jz2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":201}' 
#
_entry.id    7JZ2 
#
_exptl.entry_id    7JZ2 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          11 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 11 S N N 
? 11 Z N N 
? 11 HA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O MET 356 A MET 356 1_555 N NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? 
metalc ? metalc2 A O GLY 358 A GLY 358 1_555 N NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc3 A O GLU 388 A GLU 388 1_555 N NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? 
metalc ? metalc4 B OD1 ASP 63 B ASP 63 1_555 O FE1 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc5 B N ILE 209 B ILE 209 1_555 Q FE3 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? 
metalc ? metalc6 C NE2 HIS 84 C HIS 84 1_555 S FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? 
metalc ? metalc7 D NE2 HIS 71 D HIS 71 1_555 S FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? 
metalc ? metalc8 E O MET 356 E MET 356 1_555 V NA NA . E NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? 
metalc ? metalc9 E O GLY 358 E GLY 358 1_555 V NA NA . E NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc10 E O GLU 388 E GLU 388 1_555 V NA NA . E NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? 
metalc ? metalc11 F OD1 ASP 63 F ASP 63 1_555 W FE1 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc12 F N ILE 209 F ILE 209 1_555 Y FE3 F3S . F F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? 
metalc ? metalc13 G NE2 HIS 84 G HIS 84 1_555 Z FE HEM . G HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? 
metalc ? metalc14 I O MET 356 I MET 356 1_555 DA NA NA . I NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? 
metalc ? metalc15 I O GLY 358 I GLY 358 1_555 DA NA NA . I NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc16 I O GLU 388 I GLU 388 1_555 DA NA NA . I NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? 
metalc ? metalc17 J OD1 ASP 63 J ASP 63 1_555 EA FE1 FES . J FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc18 J N ILE 209 J ILE 209 1_555 GA FE3 F3S . J F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? 
metalc ? metalc19 K NE2 HIS 84 K HIS 84 1_555 HA FE HEM . K HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? 
metalc ? metalc20 HA FE HEM . K HEM 201 1_555 L NE2 HIS 71 L HIS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 365 n n 
CHA C4D HEM doub 366 n n 
CHA HHA HEM sing 367 n n 
CHB C4A HEM sing 368 n n 
CHB C1B HEM doub 369 n n 
CHB HHB HEM sing 370 n n 
CHC C4B HEM sing 371 n n 
CHC C1C HEM doub 372 n n 
CHC HHC HEM sing 373 n n 
CHD C4C HEM doub 374 n n 
CHD C1D HEM sing 375 n n 
CHD HHD HEM sing 376 n n 
C1A C2A HEM doub 377 n y 
C1A NA HEM sing 378 n y 
C2A C3A HEM sing 379 n y 
C2A CAA HEM sing 380 n n 
C3A C4A HEM doub 381 n y 
C3A CMA HEM sing 382 n n 
C4A NA HEM sing 383 n y 
CMA HMA HEM sing 384 n n 
CMA HMAA HEM sing 385 n n 
CMA HMAB HEM sing 386 n n 
CAA CBA HEM sing 387 n n 
CAA HAA HEM sing 388 n n 
CAA HAAA HEM sing 389 n n 
CBA CGA HEM sing 390 n n 
CBA HBA HEM sing 391 n n 
CBA HBAA HEM sing 392 n n 
CGA O1A HEM doub 393 n n 
CGA O2A HEM sing 394 n n 
C1B C2B HEM sing 395 n n 
C1B NB HEM sing 396 n n 
C2B C3B HEM doub 397 n n 
C2B CMB HEM sing 398 n n 
C3B C4B HEM sing 399 n n 
C3B CAB HEM sing 400 n n 
C4B NB HEM doub 401 n n 
CMB HMB HEM sing 402 n n 
CMB HMBA HEM sing 403 n n 
CMB HMBB HEM sing 404 n n 
CAB CBB HEM doub 405 n n 
CAB HAB HEM sing 406 n n 
CBB HBB HEM sing 407 n n 
CBB HBBA HEM sing 408 n n 
C1C C2C HEM sing 409 n y 
C1C NC HEM sing 410 n y 
C2C C3C HEM doub 411 n y 
C2C CMC HEM sing 412 n n 
C3C C4C HEM sing 413 n y 
C3C CAC HEM sing 414 n n 
C4C NC HEM sing 415 n y 
CMC HMC HEM sing 416 n n 
CMC HMCA HEM sing 417 n n 
CMC HMCB HEM sing 418 n n 
CAC CBC HEM doub 419 n n 
CAC HAC HEM sing 420 n n 
CBC HBC HEM sing 421 n n 
CBC HBCA HEM sing 422 n n 
C1D C2D HEM sing 423 n n 
C1D ND HEM doub 424 n n 
C2D C3D HEM doub 425 n n 
C2D CMD HEM sing 426 n n 
C3D C4D HEM sing 427 n n 
C3D CAD HEM sing 428 n n 
C4D ND HEM sing 429 n n 
CMD HMD HEM sing 430 n n 
CMD HMDA HEM sing 431 n n 
CMD HMDB HEM sing 432 n n 
CAD CBD HEM sing 433 n n 
CAD HAD HEM sing 434 n n 
CAD HADA HEM sing 435 n n 
CBD CGD HEM sing 436 n n 
CBD HBD HEM sing 437 n n 
CBD HBDA HEM sing 438 n n 
CGD O1D HEM doub 439 n n 
CGD O2D HEM sing 440 n n 
O2A H2A HEM sing 441 n n 
O2D H2D HEM sing 442 n n 
FE NA HEM sing 443 n n 
FE NB HEM sing 444 n n 
FE NC HEM sing 445 n n 
FE ND HEM sing 446 n n 
#
_atom_sites.entry_id                     7JZ2 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 5 FAD A 1 601 601 FAD FAD . 
N 6 NA A 1 602 1590 NA NA . 
O 7 FES B 1 301 302 FES FES . 
P 8 SF4 B 1 302 303 SF4 SF4 . 
Q 9 F3S B 1 303 304 F3S F3S . 
R 10 3PE C 1 1301 1301 3PE 3PE . 
S 11 HEM D 1 201 1129 HEM HEM . 
T 12 UQ2 D 1 202 1201 UQ2 UQ2 . 
U 5 FAD E 1 601 601 FAD FAD . 
V 6 NA E 1 602 1590 NA NA . 
W 7 FES F 1 301 302 FES FES . 
X 8 SF4 F 1 302 303 SF4 SF4 . 
Y 9 F3S F 1 303 304 F3S F3S . 
Z 11 HEM G 1 201 1129 HEM HEM . 
AA 10 3PE G 1 202 1301 3PE 3PE . 
BA 12 UQ2 H 1 1201 1201 UQ2 UQ2 . 
CA 5 FAD I 1 601 601 FAD FAD . 
DA 6 NA I 1 602 1590 NA NA . 
EA 7 FES J 1 301 302 FES FES . 
FA 8 SF4 J 1 302 303 SF4 SF4 . 
GA 9 F3S J 1 303 304 F3S F3S . 
HA 11 HEM K 1 201 1129 HEM HEM . 
IA 10 3PE K 1 202 1301 3PE 3PE . 
JA 12 UQ2 L 1 1201 1201 UQ2 UQ2 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . S 11 192.62 208.422 217.637 1 22.81 ? CHA HEM 201 D 1 
HETATM 2 C CHB HEM . . . S 11 194.598 207.15 221.879 1 22.81 ? CHB HEM 201 D 1 
HETATM 3 C CHC HEM . . . S 11 190.472 208.367 224.134 1 22.81 ? CHC HEM 201 D 1 
HETATM 4 C CHD HEM . . . S 11 188.704 210.101 219.951 1 22.81 ? CHD HEM 201 D 1 
HETATM 5 C C1A HEM . . . S 11 193.548 208.086 218.598 1 22.81 ? C1A HEM 201 D 1 
HETATM 6 C C2A HEM . . . S 11 194.98 207.977 218.41 1 22.81 ? C2A HEM 201 D 1 
HETATM 7 C C3A HEM . . . S 11 195.524 207.63 219.579 1 22.81 ? C3A HEM 201 D 1 
HETATM 8 C C4A HEM . . . S 11 194.459 207.497 220.552 1 22.81 ? C4A HEM 201 D 1 
HETATM 9 C CMA HEM . . . S 11 197.028 207.404 219.845 1 22.81 ? CMA HEM 201 D 1 
HETATM 10 C CAA HEM . . . S 11 195.744 208.233 217.093 1 22.81 ? CAA HEM 201 D 1 
HETATM 11 C CBA HEM . . . S 11 195.326 209.584 216.521 1 22.81 ? CBA HEM 201 D 1 
HETATM 12 C CGA HEM . . . S 11 195.854 209.735 215.119 1 22.81 ? CGA HEM 201 D 1 
HETATM 13 O O1A HEM . . . S 11 195.86 210.881 214.601 1 22.81 ? O1A HEM 201 D 1 
HETATM 14 O O2A HEM . . . S 11 196.274 208.711 214.521 1 22.81 ? O2A HEM 201 D 1 
HETATM 15 C C1B HEM . . . S 11 193.631 207.293 222.852 1 22.81 ? C1B HEM 201 D 1 
HETATM 16 C C2B HEM . . . S 11 193.709 206.817 224.217 1 22.81 ? C2B HEM 201 D 1 
HETATM 17 C C3B HEM . . . S 11 192.578 207.148 224.844 1 22.81 ? C3B HEM 201 D 1 
HETATM 18 C C4B HEM . . . S 11 191.729 207.851 223.897 1 22.81 ? C4B HEM 201 D 1 
HETATM 19 C CMB HEM . . . S 11 194.899 206.057 224.842 1 22.81 ? CMB HEM 201 D 1 
HETATM 20 C CAB HEM . . . S 11 192.261 206.823 226.322 1 22.81 ? CAB HEM 201 D 1 
HETATM 21 C CBB HEM . . . S 11 191.108 207.193 226.889 1 22.81 ? CBB HEM 201 D 1 
HETATM 22 C C1C HEM . . . S 11 189.637 208.956 223.207 1 22.81 ? C1C HEM 201 D 1 
HETATM 23 C C2C HEM . . . S 11 188.322 209.503 223.469 1 22.81 ? C2C HEM 201 D 1 
HETATM 24 C C3C HEM . . . S 11 187.828 209.982 222.325 1 22.81 ? C3C HEM 201 D 1 
HETATM 25 C C4C HEM . . . S 11 188.814 209.758 221.283 1 22.81 ? C4C HEM 201 D 1 
HETATM 26 C CMC HEM . . . S 11 187.613 209.528 224.84 1 22.81 ? CMC HEM 201 D 1 
HETATM 27 C CAC HEM . . . S 11 186.444 210.653 222.169 1 22.81 ? CAC HEM 201 D 1 
HETATM 28 C CBC HEM . . . S 11 186.011 211.107 220.988 1 22.81 ? CBC HEM 201 D 1 
HETATM 29 C C1D HEM . . . S 11 189.554 209.695 218.945 1 22.81 ? C1D HEM 201 D 1 
HETATM 30 C C2D HEM . . . S 11 189.27 209.684 217.523 1 22.81 ? C2D HEM 201 D 1 
HETATM 31 C C3D HEM . . . S 11 190.35 209.216 216.891 1 22.81 ? C3D HEM 201 D 1 
HETATM 32 C C4D HEM . . . S 11 191.36 208.92 217.883 1 22.81 ? C4D HEM 201 D 1 
HETATM 33 C CMD HEM . . . S 11 187.949 210.127 216.859 1 22.81 ? CMD HEM 201 D 1 
HETATM 34 C CAD HEM . . . S 11 190.519 209.028 215.368 1 22.81 ? CAD HEM 201 D 1 
HETATM 35 C CBD HEM . . . S 11 190.548 210.389 214.681 1 22.81 ? CBD HEM 201 D 1 
HETATM 36 C CGD HEM . . . S 11 191.29 210.264 213.377 1 22.81 ? CGD HEM 201 D 1 
HETATM 37 O O1D HEM . . . S 11 191.392 211.279 212.642 1 22.81 ? O1D HEM 201 D 1 
HETATM 38 O O2D HEM . . . S 11 191.782 209.146 213.073 1 22.81 ? O2D HEM 201 D 1 
HETATM 39 N NA HEM . . . S 11 193.266 207.784 219.917 1 22.81 ? NA HEM 201 D 1 
HETATM 40 N NB HEM . . . S 11 192.408 207.919 222.694 1 22.81 ? NB HEM 201 D 1 
HETATM 41 N NC HEM . . . S 11 189.903 209.13 221.861 1 22.81 ? NC HEM 201 D 1 
HETATM 42 N ND HEM . . . S 11 190.84 209.222 219.126 1 22.81 ? ND HEM 201 D 1 
HETATM 43 FE FE HEM . . . S 11 191.621 208.545 220.903 1 22.81 ? FE HEM 201 D 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           257 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#