data_7JZ2
#
_model_server_result.job_id            7chMZyWkGZeQNFR81tsegw 
_model_server_result.datetime_utc      '2024-11-04 22:51:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7jz2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":202}' 
#
_entry.id    7JZ2 
#
_exptl.entry_id    7JZ2 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              318.407 
_entity.id                          12 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            UBIQUINONE-2 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 12 T N N 
? 12 BA N N 
? 12 JA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O MET 356 A MET 356 1_555 N NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? 
metalc ? metalc2 A O GLY 358 A GLY 358 1_555 N NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc3 A O GLU 388 A GLU 388 1_555 N NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? 
metalc ? metalc4 B OD1 ASP 63 B ASP 63 1_555 O FE1 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc5 B N ILE 209 B ILE 209 1_555 Q FE3 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? 
metalc ? metalc6 C NE2 HIS 84 C HIS 84 1_555 S FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? 
metalc ? metalc7 D NE2 HIS 71 D HIS 71 1_555 S FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? 
metalc ? metalc8 E O MET 356 E MET 356 1_555 V NA NA . E NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? 
metalc ? metalc9 E O GLY 358 E GLY 358 1_555 V NA NA . E NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc10 E O GLU 388 E GLU 388 1_555 V NA NA . E NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? 
metalc ? metalc11 F OD1 ASP 63 F ASP 63 1_555 W FE1 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc12 F N ILE 209 F ILE 209 1_555 Y FE3 F3S . F F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? 
metalc ? metalc13 G NE2 HIS 84 G HIS 84 1_555 Z FE HEM . G HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? 
metalc ? metalc14 I O MET 356 I MET 356 1_555 DA NA NA . I NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? 
metalc ? metalc15 I O GLY 358 I GLY 358 1_555 DA NA NA . I NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc16 I O GLU 388 I GLU 388 1_555 DA NA NA . I NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? 
metalc ? metalc17 J OD1 ASP 63 J ASP 63 1_555 EA FE1 FES . J FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc18 J N ILE 209 J ILE 209 1_555 GA FE3 F3S . J F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? 
metalc ? metalc19 K NE2 HIS 84 K HIS 84 1_555 HA FE HEM . K HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? 
metalc ? metalc20 HA FE HEM . K HEM 201 1_555 L NE2 HIS 71 L HIS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? 
#
_chem_comp.formula           'C19 H26 O4' 
_chem_comp.formula_weight    318.407 
_chem_comp.id                UQ2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              UBIQUINONE-2 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 UQ2 sing 686 n n 
C1 C6 UQ2 sing 687 n n 
C1 O1 UQ2 doub 688 n n 
C2 C3 UQ2 doub 689 n n 
C2 O2 UQ2 sing 690 n n 
C3 C4 UQ2 sing 691 n n 
C3 O3 UQ2 sing 692 n n 
C4 C5 UQ2 sing 693 n n 
C4 O4 UQ2 doub 694 n n 
C5 C6 UQ2 doub 695 n n 
C5 CM5 UQ2 sing 696 n n 
C6 C7 UQ2 sing 697 n n 
CM2 O2 UQ2 sing 698 n n 
CM2 H2M1 UQ2 sing 699 n n 
CM2 H2M2 UQ2 sing 700 n n 
CM2 H2M3 UQ2 sing 701 n n 
CM3 O3 UQ2 sing 702 n n 
CM3 H3M1 UQ2 sing 703 n n 
CM3 H3M2 UQ2 sing 704 n n 
CM3 H3M3 UQ2 sing 705 n n 
CM5 H5M1 UQ2 sing 706 n n 
CM5 H5M2 UQ2 sing 707 n n 
CM5 H5M3 UQ2 sing 708 n n 
C7 C8 UQ2 sing 709 n n 
C7 H71 UQ2 sing 710 n n 
C7 H72 UQ2 sing 711 n n 
C8 C9 UQ2 doub 712 e n 
C8 H8 UQ2 sing 713 n n 
C9 C10 UQ2 sing 714 n n 
C9 C11 UQ2 sing 715 n n 
C10 H101 UQ2 sing 716 n n 
C10 H102 UQ2 sing 717 n n 
C10 H103 UQ2 sing 718 n n 
C11 C12 UQ2 sing 719 n n 
C11 H111 UQ2 sing 720 n n 
C11 H112 UQ2 sing 721 n n 
C12 C13 UQ2 sing 722 n n 
C12 H121 UQ2 sing 723 n n 
C12 H122 UQ2 sing 724 n n 
C13 C14 UQ2 doub 725 n n 
C13 H13 UQ2 sing 726 n n 
C14 C15 UQ2 sing 727 n n 
C14 C16 UQ2 sing 728 n n 
C15 H151 UQ2 sing 729 n n 
C15 H152 UQ2 sing 730 n n 
C15 H153 UQ2 sing 731 n n 
C16 H161 UQ2 sing 732 n n 
C16 H162 UQ2 sing 733 n n 
C16 H163 UQ2 sing 734 n n 
#
_atom_sites.entry_id                     7JZ2 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 5 FAD A 1 601 601 FAD FAD . 
N 6 NA A 1 602 1590 NA NA . 
O 7 FES B 1 301 302 FES FES . 
P 8 SF4 B 1 302 303 SF4 SF4 . 
Q 9 F3S B 1 303 304 F3S F3S . 
R 10 3PE C 1 1301 1301 3PE 3PE . 
S 11 HEM D 1 201 1129 HEM HEM . 
T 12 UQ2 D 1 202 1201 UQ2 UQ2 . 
U 5 FAD E 1 601 601 FAD FAD . 
V 6 NA E 1 602 1590 NA NA . 
W 7 FES F 1 301 302 FES FES . 
X 8 SF4 F 1 302 303 SF4 SF4 . 
Y 9 F3S F 1 303 304 F3S F3S . 
Z 11 HEM G 1 201 1129 HEM HEM . 
AA 10 3PE G 1 202 1301 3PE 3PE . 
BA 12 UQ2 H 1 1201 1201 UQ2 UQ2 . 
CA 5 FAD I 1 601 601 FAD FAD . 
DA 6 NA I 1 602 1590 NA NA . 
EA 7 FES J 1 301 302 FES FES . 
FA 8 SF4 J 1 302 303 SF4 SF4 . 
GA 9 F3S J 1 303 304 F3S F3S . 
HA 11 HEM K 1 201 1129 HEM HEM . 
IA 10 3PE K 1 202 1301 3PE 3PE . 
JA 12 UQ2 L 1 1201 1201 UQ2 UQ2 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 UQ2 . . . T 12 202.252 215.356 210.86 1 28.15 ? C1 UQ2 202 D 1 
HETATM 2 C C2 UQ2 . . . T 12 200.77 215.474 210.523 1 28.15 ? C2 UQ2 202 D 1 
HETATM 3 C C3 UQ2 . . . T 12 200.2 216.805 210.054 1 28.15 ? C3 UQ2 202 D 1 
HETATM 4 C C4 UQ2 . . . T 12 201.107 218.024 209.919 1 28.15 ? C4 UQ2 202 D 1 
HETATM 5 C C5 UQ2 . . . T 12 202.594 217.911 210.253 1 28.15 ? C5 UQ2 202 D 1 
HETATM 6 C C6 UQ2 . . . T 12 203.17 216.572 210.727 1 28.15 ? C6 UQ2 202 D 1 
HETATM 7 C CM2 UQ2 . . . T 12 199.648 213.707 209.445 1 28.15 ? CM2 UQ2 202 D 1 
HETATM 8 C CM3 UQ2 . . . T 12 198.139 217.786 210.574 1 28.15 ? CM3 UQ2 202 D 1 
HETATM 9 C CM5 UQ2 . . . T 12 203.488 219.142 210.113 1 28.15 ? CM5 UQ2 202 D 1 
HETATM 10 C C7 UQ2 . . . T 12 204.652 216.431 211.069 1 28.15 ? C7 UQ2 202 D 1 
HETATM 11 C C8 UQ2 . . . T 12 204.782 215.736 212.425 1 28.15 ? C8 UQ2 202 D 1 
HETATM 12 C C9 UQ2 . . . T 12 205.52 214.656 212.613 1 28.15 ? C9 UQ2 202 D 1 
HETATM 13 C C10 UQ2 . . . T 12 206.324 214.017 211.478 1 28.15 ? C10 UQ2 202 D 1 
HETATM 14 C C11 UQ2 . . . T 12 205.59 214.023 214.004 1 28.15 ? C11 UQ2 202 D 1 
HETATM 15 C C12 UQ2 . . . T 12 204.194 213.654 214.51 1 28.15 ? C12 UQ2 202 D 1 
HETATM 16 C C13 UQ2 . . . T 12 204.221 213.584 216.039 1 28.15 ? C13 UQ2 202 D 1 
HETATM 17 C C14 UQ2 . . . T 12 204.024 212.463 216.713 1 28.15 ? C14 UQ2 202 D 1 
HETATM 18 C C15 UQ2 . . . T 12 203.745 211.13 216.022 1 28.15 ? C15 UQ2 202 D 1 
HETATM 19 C C16 UQ2 . . . T 12 204.072 212.501 218.239 1 28.15 ? C16 UQ2 202 D 1 
HETATM 20 O O1 UQ2 . . . T 12 202.687 214.317 211.224 1 28.15 ? O1 UQ2 202 D 1 
HETATM 21 O O2 UQ2 . . . T 12 199.931 214.361 210.648 1 28.15 ? O2 UQ2 202 D 1 
HETATM 22 O O3 UQ2 . . . T 12 198.84 216.907 209.746 1 28.15 ? O3 UQ2 202 D 1 
HETATM 23 O O4 UQ2 . . . T 12 200.659 219.058 209.553 1 28.15 ? O4 UQ2 202 D 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    47 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           23 
#