data_7JZ6
#
_model_server_result.job_id            fSd2c1HJhQIHB9QjsqQpkQ 
_model_server_result.datetime_utc      '2024-11-16 10:11:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7jz6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1001}' 
#
_entry.id    7JZ6 
#
_exptl.entry_id    7JZ6 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7JZ6 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7JZ6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 267 A HIS 267 1_555 E FE HEM . A HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? 
metalc ? metalc2 B NE2 HIS 267 B HIS 267 1_555 F FE HEM . B HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? 
metalc ? metalc3 C NE2 HIS 267 C HIS 267 1_555 G FE HEM . C HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? 
metalc ? metalc4 D NE2 HIS 267 D HIS 267 1_555 H FE HEM . D HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     7JZ6 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 1001 1001 HEM HEM . 
F 2 HEM B 1 1001 1001 HEM HEM . 
G 2 HEM C 1 1001 1001 HEM HEM . 
H 2 HEM D 1 1001 1001 HEM HEM . 
I 3 HOH A 1 1101 5 HOH HOH . 
I 3 HOH A 2 1102 2 HOH HOH . 
I 3 HOH A 3 1103 4 HOH HOH . 
I 3 HOH A 4 1104 6 HOH HOH . 
I 3 HOH A 5 1105 3 HOH HOH . 
I 3 HOH A 6 1106 1 HOH HOH . 
J 3 HOH B 1 1101 7 HOH HOH . 
J 3 HOH B 2 1102 8 HOH HOH . 
J 3 HOH B 3 1103 10 HOH HOH . 
J 3 HOH B 4 1104 9 HOH HOH . 
K 3 HOH C 1 1101 12 HOH HOH . 
K 3 HOH C 2 1102 11 HOH HOH . 
K 3 HOH C 3 1103 14 HOH HOH . 
K 3 HOH C 4 1104 13 HOH HOH . 
L 3 HOH D 1 1101 15 HOH HOH . 
L 3 HOH D 2 1102 16 HOH HOH . 
L 3 HOH D 3 1103 18 HOH HOH . 
L 3 HOH D 4 1104 17 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . E 2 221.999 198.044 228.826 1 0 ? CHA HEM 1001 A 1 
HETATM 2 C CHB HEM . . . E 2 221.307 194.104 231.564 1 0 ? CHB HEM 1001 A 1 
HETATM 3 C CHC HEM . . . E 2 222.188 191.265 227.744 1 0 ? CHC HEM 1001 A 1 
HETATM 4 C CHD HEM . . . E 2 223.07 195.232 225.083 1 0 ? CHD HEM 1001 A 1 
HETATM 5 C C1A HEM . . . E 2 221.641 197.224 229.873 1 0 ? C1A HEM 1001 A 1 
HETATM 6 C C2A HEM . . . E 2 221.092 197.647 231.137 1 0 ? C2A HEM 1001 A 1 
HETATM 7 C C3A HEM . . . E 2 220.899 196.561 231.883 1 0 ? C3A HEM 1001 A 1 
HETATM 8 C C4A HEM . . . E 2 221.341 195.41 231.131 1 0 ? C4A HEM 1001 A 1 
HETATM 9 C CMA HEM . . . E 2 220.32 196.56 233.306 1 0 ? CMA HEM 1001 A 1 
HETATM 10 C CAA HEM . . . E 2 220.753 199.092 231.549 1 0 ? CAA HEM 1001 A 1 
HETATM 11 C CBA HEM . . . E 2 219.524 199.553 230.766 1 0 ? CBA HEM 1001 A 1 
HETATM 12 C CGA HEM . . . E 2 219.323 201.036 230.899 1 0 ? CGA HEM 1001 A 1 
HETATM 13 O O1A HEM . . . E 2 219.24 201.559 232.022 1 0 ? O1A HEM 1001 A 1 
HETATM 14 O O2A HEM . . . E 2 219.24 201.716 229.853 1 0 ? O2A HEM 1001 A 1 
HETATM 15 C C1B HEM . . . E 2 221.526 192.986 230.789 1 0 ? C1B HEM 1001 A 1 
HETATM 16 C C2B HEM . . . E 2 221.557 191.608 231.244 1 0 ? C2B HEM 1001 A 1 
HETATM 17 C C3B HEM . . . E 2 221.786 190.827 230.176 1 0 ? C3B HEM 1001 A 1 
HETATM 18 C C4B HEM . . . E 2 221.935 191.68 229.026 1 0 ? C4B HEM 1001 A 1 
HETATM 19 C CMB HEM . . . E 2 221.337 191.16 232.693 1 0 ? CMB HEM 1001 A 1 
HETATM 20 C CAB HEM . . . E 2 221.946 189.288 230.109 1 0 ? CAB HEM 1001 A 1 
HETATM 21 C CBB HEM . . . E 2 222.48 188.618 231.12 1 0 ? CBB HEM 1001 A 1 
HETATM 22 C C1C HEM . . . E 2 222.48 192.114 226.71 1 0 ? C1C HEM 1001 A 1 
HETATM 23 C C2C HEM . . . E 2 222.742 191.68 225.381 1 0 ? C2C HEM 1001 A 1 
HETATM 24 C C3C HEM . . . E 2 223 192.765 224.639 1 0 ? C3C HEM 1001 A 1 
HETATM 25 C C4C HEM . . . E 2 222.882 193.929 225.488 1 0 ? C4C HEM 1001 A 1 
HETATM 26 C CMC HEM . . . E 2 222.732 190.193 224.986 1 0 ? CMC HEM 1001 A 1 
HETATM 27 C CAC HEM . . . E 2 223.362 192.86 223.139 1 0 ? CAC HEM 1001 A 1 
HETATM 28 C CBC HEM . . . E 2 223.567 191.783 222.392 1 0 ? CBC HEM 1001 A 1 
HETATM 29 C C1D HEM . . . E 2 222.98 196.342 225.879 1 0 ? C1D HEM 1001 A 1 
HETATM 30 C C2D HEM . . . E 2 223.481 197.672 225.607 1 0 ? C2D HEM 1001 A 1 
HETATM 31 C C3D HEM . . . E 2 223.188 198.461 226.645 1 0 ? C3D HEM 1001 A 1 
HETATM 32 C C4D HEM . . . E 2 222.484 197.64 227.611 1 0 ? C4D HEM 1001 A 1 
HETATM 33 C CMD HEM . . . E 2 224.212 198.098 224.324 1 0 ? CMD HEM 1001 A 1 
HETATM 34 C CAD HEM . . . E 2 223.531 199.976 226.785 1 0 ? CAD HEM 1001 A 1 
HETATM 35 C CBD HEM . . . E 2 222.225 200.759 226.805 1 0 ? CBD HEM 1001 A 1 
HETATM 36 C CGD HEM . . . E 2 222.367 202.231 226.516 1 0 ? CGD HEM 1001 A 1 
HETATM 37 O O1D HEM . . . E 2 223.421 202.699 226.022 1 0 ? O1D HEM 1001 A 1 
HETATM 38 O O2D HEM . . . E 2 221.373 202.953 226.772 1 0 ? O2D HEM 1001 A 1 
HETATM 39 N NA HEM . . . E 2 221.778 195.858 229.903 1 0 ? NA HEM 1001 A 1 
HETATM 40 N NB HEM . . . E 2 221.768 192.982 229.431 1 0 ? NB HEM 1001 A 1 
HETATM 41 N NC HEM . . . E 2 222.552 193.5 226.752 1 0 ? NC HEM 1001 A 1 
HETATM 42 N ND HEM . . . E 2 222.39 196.357 227.116 1 0 ? ND HEM 1001 A 1 
HETATM 43 FE FE HEM . . . E 2 222.216 194.659 228.281 1 0 ? FE HEM 1001 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    75 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#