data_7K07 # _model_server_result.job_id DE3w0Z3QKmUuTzUZSKdZeA _model_server_result.datetime_utc '2024-11-23 05:10:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k07 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 7K07 # _exptl.entry_id 7K07 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7K07 _cell.length_a 58.627 _cell.length_b 74.777 _cell.length_c 96.725 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K07 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 164 A CYS 285 1_555 B SG CYS 164 B CYS 285 2_765 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc1 A OD2 ASP 29 A ASP 150 1_555 D MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc2 A OD1 ASP 29 A ASP 150 1_555 E MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc3 A OE2 GLU 31 A GLU 152 1_555 D MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc4 A OD2 ASP 191 A ASP 312 1_555 D MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc5 C O2P AMP . A AMP 501 1_555 D MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc6 C O1P AMP . A AMP 501 1_555 E MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc7 C O2P AMP . A AMP 501 1_555 E MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc8 D MN MN . A MN 502 1_555 I O HOH . A HOH 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc9 E MN MN . A MN 503 1_555 I O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc10 E MN MN . A MN 503 1_555 I O HOH . A HOH 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc11 E MN MN . A MN 503 1_555 I O HOH . A HOH 673 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc12 B OD2 ASP 29 B ASP 150 1_555 G MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc13 B OD1 ASP 29 B ASP 150 1_555 H MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc14 B OE2 GLU 31 B GLU 152 1_555 G MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc15 B OD2 ASP 191 B ASP 312 1_555 G MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc16 F O3P AMP . B AMP 501 1_555 G MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc17 F O1P AMP . B AMP 501 1_555 H MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc18 F O3P AMP . B AMP 501 1_555 H MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc19 H MN MN . B MN 503 1_555 J O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc20 H MN MN . B MN 503 1_555 J O HOH . B HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc21 H MN MN . B MN 503 1_555 J O HOH . B HOH 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7K07 _atom_sites.fract_transf_matrix[1][1] 0.017057 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013373 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010339 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMP A 1 501 501 AMP AMP . D 3 MN A 1 502 502 MN MN . E 3 MN A 1 503 503 MN MN . F 2 AMP B 1 501 501 AMP AMP . G 3 MN B 1 502 502 MN MN . H 3 MN B 1 503 503 MN MN . I 4 HOH A 1 601 34 HOH HOH . I 4 HOH A 2 602 152 HOH HOH . I 4 HOH A 3 603 125 HOH HOH . I 4 HOH A 4 604 19 HOH HOH . I 4 HOH A 5 605 52 HOH HOH . I 4 HOH A 6 606 106 HOH HOH . I 4 HOH A 7 607 71 HOH HOH . I 4 HOH A 8 608 118 HOH HOH . I 4 HOH A 9 609 11 HOH HOH . I 4 HOH A 10 610 16 HOH HOH . I 4 HOH A 11 611 1 HOH HOH . I 4 HOH A 12 612 135 HOH HOH . I 4 HOH A 13 613 17 HOH HOH . I 4 HOH A 14 614 37 HOH HOH . I 4 HOH A 15 615 5 HOH HOH . I 4 HOH A 16 616 15 HOH HOH . I 4 HOH A 17 617 6 HOH HOH . I 4 HOH A 18 618 101 HOH HOH . I 4 HOH A 19 619 10 HOH HOH . I 4 HOH A 20 620 36 HOH HOH . I 4 HOH A 21 621 171 HOH HOH . I 4 HOH A 22 622 24 HOH HOH . I 4 HOH A 23 623 100 HOH HOH . I 4 HOH A 24 624 7 HOH HOH . I 4 HOH A 25 625 164 HOH HOH . I 4 HOH A 26 626 3 HOH HOH . I 4 HOH A 27 627 40 HOH HOH . I 4 HOH A 28 628 161 HOH HOH . I 4 HOH A 29 629 72 HOH HOH . I 4 HOH A 30 630 150 HOH HOH . I 4 HOH A 31 631 35 HOH HOH . I 4 HOH A 32 632 45 HOH HOH . I 4 HOH A 33 633 27 HOH HOH . I 4 HOH A 34 634 126 HOH HOH . I 4 HOH A 35 635 157 HOH HOH . I 4 HOH A 36 636 2 HOH HOH . I 4 HOH A 37 637 30 HOH HOH . I 4 HOH A 38 638 77 HOH HOH . I 4 HOH A 39 639 123 HOH HOH . I 4 HOH A 40 640 21 HOH HOH . I 4 HOH A 41 641 33 HOH HOH . I 4 HOH A 42 642 89 HOH HOH . I 4 HOH A 43 643 68 HOH HOH . I 4 HOH A 44 644 73 HOH HOH . I 4 HOH A 45 645 59 HOH HOH . I 4 HOH A 46 646 20 HOH HOH . I 4 HOH A 47 647 134 HOH HOH . I 4 HOH A 48 648 54 HOH HOH . I 4 HOH A 49 649 83 HOH HOH . I 4 HOH A 50 650 66 HOH HOH . I 4 HOH A 51 651 25 HOH HOH . I 4 HOH A 52 652 42 HOH HOH . I 4 HOH A 53 653 65 HOH HOH . I 4 HOH A 54 654 13 HOH HOH . I 4 HOH A 55 655 111 HOH HOH . I 4 HOH A 56 656 43 HOH HOH . I 4 HOH A 57 657 18 HOH HOH . I 4 HOH A 58 658 84 HOH HOH . I 4 HOH A 59 659 47 HOH HOH . I 4 HOH A 60 660 50 HOH HOH . I 4 HOH A 61 661 163 HOH HOH . I 4 HOH A 62 662 165 HOH HOH . I 4 HOH A 63 663 78 HOH HOH . I 4 HOH A 64 664 140 HOH HOH . I 4 HOH A 65 665 57 HOH HOH . I 4 HOH A 66 666 63 HOH HOH . I 4 HOH A 67 667 14 HOH HOH . I 4 HOH A 68 668 85 HOH HOH . I 4 HOH A 69 669 112 HOH HOH . I 4 HOH A 70 670 22 HOH HOH . I 4 HOH A 71 671 56 HOH HOH . I 4 HOH A 72 672 38 HOH HOH . I 4 HOH A 73 673 155 HOH HOH . I 4 HOH A 74 674 94 HOH HOH . I 4 HOH A 75 675 41 HOH HOH . I 4 HOH A 76 676 64 HOH HOH . I 4 HOH A 77 677 144 HOH HOH . I 4 HOH A 78 678 69 HOH HOH . I 4 HOH A 79 679 81 HOH HOH . I 4 HOH A 80 680 12 HOH HOH . I 4 HOH A 81 681 129 HOH HOH . I 4 HOH A 82 682 51 HOH HOH . I 4 HOH A 83 683 130 HOH HOH . I 4 HOH A 84 684 103 HOH HOH . I 4 HOH A 85 685 160 HOH HOH . I 4 HOH A 86 686 162 HOH HOH . I 4 HOH A 87 687 105 HOH HOH . I 4 HOH A 88 688 119 HOH HOH . I 4 HOH A 89 689 166 HOH HOH . I 4 HOH A 90 690 158 HOH HOH . I 4 HOH A 91 691 169 HOH HOH . I 4 HOH A 92 692 124 HOH HOH . I 4 HOH A 93 693 76 HOH HOH . I 4 HOH A 94 694 107 HOH HOH . I 4 HOH A 95 695 114 HOH HOH . I 4 HOH A 96 696 117 HOH HOH . I 4 HOH A 97 697 159 HOH HOH . I 4 HOH A 98 698 138 HOH HOH . I 4 HOH A 99 699 70 HOH HOH . I 4 HOH A 100 700 131 HOH HOH . I 4 HOH A 101 701 86 HOH HOH . I 4 HOH A 102 702 74 HOH HOH . J 4 HOH B 1 601 75 HOH HOH . J 4 HOH B 2 602 151 HOH HOH . J 4 HOH B 3 603 116 HOH HOH . J 4 HOH B 4 604 87 HOH HOH . J 4 HOH B 5 605 9 HOH HOH . J 4 HOH B 6 606 153 HOH HOH . J 4 HOH B 7 607 39 HOH HOH . J 4 HOH B 8 608 133 HOH HOH . J 4 HOH B 9 609 149 HOH HOH . J 4 HOH B 10 610 91 HOH HOH . J 4 HOH B 11 611 4 HOH HOH . J 4 HOH B 12 612 90 HOH HOH . J 4 HOH B 13 613 8 HOH HOH . J 4 HOH B 14 614 62 HOH HOH . J 4 HOH B 15 615 108 HOH HOH . J 4 HOH B 16 616 93 HOH HOH . J 4 HOH B 17 617 109 HOH HOH . J 4 HOH B 18 618 80 HOH HOH . J 4 HOH B 19 619 67 HOH HOH . J 4 HOH B 20 620 88 HOH HOH . J 4 HOH B 21 621 168 HOH HOH . J 4 HOH B 22 622 170 HOH HOH . J 4 HOH B 23 623 32 HOH HOH . J 4 HOH B 24 624 23 HOH HOH . J 4 HOH B 25 625 145 HOH HOH . J 4 HOH B 26 626 58 HOH HOH . J 4 HOH B 27 627 99 HOH HOH . J 4 HOH B 28 628 79 HOH HOH . J 4 HOH B 29 629 156 HOH HOH . J 4 HOH B 30 630 132 HOH HOH . J 4 HOH B 31 631 28 HOH HOH . J 4 HOH B 32 632 143 HOH HOH . J 4 HOH B 33 633 136 HOH HOH . J 4 HOH B 34 634 148 HOH HOH . J 4 HOH B 35 635 53 HOH HOH . J 4 HOH B 36 636 61 HOH HOH . J 4 HOH B 37 637 46 HOH HOH . J 4 HOH B 38 638 137 HOH HOH . J 4 HOH B 39 639 31 HOH HOH . J 4 HOH B 40 640 29 HOH HOH . J 4 HOH B 41 641 147 HOH HOH . J 4 HOH B 42 642 104 HOH HOH . J 4 HOH B 43 643 95 HOH HOH . J 4 HOH B 44 644 44 HOH HOH . J 4 HOH B 45 645 121 HOH HOH . J 4 HOH B 46 646 115 HOH HOH . J 4 HOH B 47 647 128 HOH HOH . J 4 HOH B 48 648 154 HOH HOH . J 4 HOH B 49 649 120 HOH HOH . J 4 HOH B 50 650 102 HOH HOH . J 4 HOH B 51 651 110 HOH HOH . J 4 HOH B 52 652 146 HOH HOH . J 4 HOH B 53 653 55 HOH HOH . J 4 HOH B 54 654 82 HOH HOH . J 4 HOH B 55 655 49 HOH HOH . J 4 HOH B 56 656 167 HOH HOH . J 4 HOH B 57 657 60 HOH HOH . J 4 HOH B 58 658 26 HOH HOH . J 4 HOH B 59 659 142 HOH HOH . J 4 HOH B 60 660 122 HOH HOH . J 4 HOH B 61 661 92 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 63.694 _atom_site.Cartn_y 13.105 _atom_site.Cartn_z 5.898 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.6 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #