data_7K0P
#
_model_server_result.job_id            SOuMZQdsayfsAq7Oy-5Wuw 
_model_server_result.datetime_utc      '2025-08-31 09:35:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7k0p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":102}' 
#
_entry.id    7K0P 
#
_exptl.entry_id    7K0P 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    13 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7K0P 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7K0P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
? 5 M N N 
? 5 N N N 
? 5 O N N 
? 5 P N N 
? 5 Q N N 
? 5 R N N 
? 5 S N N 
? 5 T N N 
? 5 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C THR 378 B THR 378 1_555 B N LLP 379 B LLP 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 B C LLP 379 B LLP 379 1_555 B N SER 380 B SER 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 F C THR 378 F THR 378 1_555 F N LLP 379 F LLP 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 F C LLP 379 F LLP 379 1_555 F N SER 380 F SER 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C12 POV sing 305 n n 
N C13 POV sing 306 n n 
N C14 POV sing 307 n n 
N C15 POV sing 308 n n 
P O11 POV sing 309 n n 
P O12 POV sing 310 n n 
P O13 POV sing 311 n n 
P O14 POV doub 312 n n 
C1 C2 POV sing 313 n n 
C1 O11 POV sing 314 n n 
C1 H1 POV sing 315 n n 
C1 H1A POV sing 316 n n 
C2 C3 POV sing 317 n n 
C2 O21 POV sing 318 n n 
C2 H2 POV sing 319 n n 
C3 O31 POV sing 320 n n 
C3 H3 POV sing 321 n n 
C3 H3A POV sing 322 n n 
C210 C211 POV sing 323 n n 
C210 C29 POV doub 324 z n 
C210 H210 POV sing 325 n n 
C310 C311 POV sing 326 n n 
C310 C39 POV sing 327 n n 
C310 H310 POV sing 328 n n 
C310 H31A POV sing 329 n n 
C11 C12 POV sing 330 n n 
C11 O12 POV sing 331 n n 
C11 H11 POV sing 332 n n 
C11 H11A POV sing 333 n n 
C211 C212 POV sing 334 n n 
C211 H211 POV sing 335 n n 
C211 H21A POV sing 336 n n 
C311 C312 POV sing 337 n n 
C311 H311 POV sing 338 n n 
C311 H31B POV sing 339 n n 
C12 H12 POV sing 340 n n 
C12 H12A POV sing 341 n n 
C212 C213 POV sing 342 n n 
C212 H212 POV sing 343 n n 
C212 H21B POV sing 344 n n 
C312 C313 POV sing 345 n n 
C312 H312 POV sing 346 n n 
C312 H31C POV sing 347 n n 
C13 H13 POV sing 348 n n 
C13 H13A POV sing 349 n n 
C13 H13B POV sing 350 n n 
C213 C214 POV sing 351 n n 
C213 H213 POV sing 352 n n 
C213 H21C POV sing 353 n n 
C313 C314 POV sing 354 n n 
C313 H313 POV sing 355 n n 
C313 H31D POV sing 356 n n 
C14 H14 POV sing 357 n n 
C14 H14A POV sing 358 n n 
C14 H14B POV sing 359 n n 
C214 C215 POV sing 360 n n 
C214 H214 POV sing 361 n n 
C214 H21D POV sing 362 n n 
C314 C315 POV sing 363 n n 
C314 H314 POV sing 364 n n 
C314 H31E POV sing 365 n n 
C15 H15 POV sing 366 n n 
C15 H15A POV sing 367 n n 
C15 H15B POV sing 368 n n 
C215 C216 POV sing 369 n n 
C215 H215 POV sing 370 n n 
C215 H21E POV sing 371 n n 
C315 C316 POV sing 372 n n 
C315 H315 POV sing 373 n n 
C315 H31F POV sing 374 n n 
C216 C217 POV sing 375 n n 
C216 H216 POV sing 376 n n 
C216 H21F POV sing 377 n n 
C316 H316 POV sing 378 n n 
C316 H31G POV sing 379 n n 
C316 H31H POV sing 380 n n 
C217 C218 POV sing 381 n n 
C217 H217 POV sing 382 n n 
C217 H21G POV sing 383 n n 
C218 H218 POV sing 384 n n 
C218 H21H POV sing 385 n n 
C218 H21J POV sing 386 n n 
C21 O21 POV sing 387 n n 
C21 C22 POV sing 388 n n 
C21 O22 POV doub 389 n n 
C22 C23 POV sing 390 n n 
C22 H22 POV sing 391 n n 
C22 H22A POV sing 392 n n 
C23 C24 POV sing 393 n n 
C23 H23 POV sing 394 n n 
C23 H23A POV sing 395 n n 
C24 C25 POV sing 396 n n 
C24 H24 POV sing 397 n n 
C24 H24A POV sing 398 n n 
C25 C26 POV sing 399 n n 
C25 H25 POV sing 400 n n 
C25 H25A POV sing 401 n n 
C26 C27 POV sing 402 n n 
C26 H26 POV sing 403 n n 
C26 H26A POV sing 404 n n 
C27 C28 POV sing 405 n n 
C27 H27 POV sing 406 n n 
C27 H27A POV sing 407 n n 
C28 C29 POV sing 408 n n 
C28 H28 POV sing 409 n n 
C28 H28A POV sing 410 n n 
C29 H29 POV sing 411 n n 
C31 O31 POV sing 412 n n 
C31 C32 POV sing 413 n n 
C31 O32 POV doub 414 n n 
C32 C33 POV sing 415 n n 
C32 H32 POV sing 416 n n 
C32 H32A POV sing 417 n n 
C33 C34 POV sing 418 n n 
C33 H33 POV sing 419 n n 
C33 H33A POV sing 420 n n 
C34 C35 POV sing 421 n n 
C34 H34 POV sing 422 n n 
C34 H34A POV sing 423 n n 
C35 C36 POV sing 424 n n 
C35 H35 POV sing 425 n n 
C35 H35A POV sing 426 n n 
C36 C37 POV sing 427 n n 
C36 H36 POV sing 428 n n 
C36 H36A POV sing 429 n n 
C37 C38 POV sing 430 n n 
C37 H37 POV sing 431 n n 
C37 H37A POV sing 432 n n 
C38 C39 POV sing 433 n n 
C38 H38 POV sing 434 n n 
C38 H38A POV sing 435 n n 
C39 H39 POV sing 436 n n 
C39 H39A POV sing 437 n n 
#
_atom_sites.entry_id                     7K0P 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 POV B 1 601 905 POV POV . 
J 5 POV B 1 602 903 POV POV . 
K 5 POV C 1 101 902 POV POV . 
L 5 POV C 1 102 903 POV POV . 
M 5 POV D 1 901 901 POV POV . 
N 5 POV D 1 902 902 POV POV . 
O 5 POV F 1 601 905 POV POV . 
P 5 POV F 1 602 903 POV POV . 
Q 5 POV G 1 101 902 POV POV . 
R 5 POV G 1 102 903 POV POV . 
S 5 POV G 1 103 904 POV POV . 
T 5 POV H 1 901 901 POV POV . 
U 5 POV H 1 902 902 POV POV . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C310 POV . . . L 5 179.299 159.513 124.92 1 67.81 ? C310 POV 102 C 1 
HETATM 2 C C311 POV . . . L 5 178.418 158.418 125.498 1 67.81 ? C311 POV 102 C 1 
HETATM 3 C C312 POV . . . L 5 178.829 158.116 126.928 1 67.81 ? C312 POV 102 C 1 
HETATM 4 C C313 POV . . . L 5 177.835 157.155 127.556 1 67.81 ? C313 POV 102 C 1 
HETATM 5 C C314 POV . . . L 5 178.135 156.98 129.033 1 67.81 ? C314 POV 102 C 1 
HETATM 6 C C315 POV . . . L 5 177.042 156.155 129.695 1 67.81 ? C315 POV 102 C 1 
HETATM 7 C C316 POV . . . L 5 177.335 155.988 131.175 1 67.81 ? C316 POV 102 C 1 
HETATM 8 C C36 POV . . . L 5 180.092 162.301 120.877 1 67.81 ? C36 POV 102 C 1 
HETATM 9 C C37 POV . . . L 5 179.075 161.463 121.628 1 67.81 ? C37 POV 102 C 1 
HETATM 10 C C38 POV . . . L 5 179.666 160.984 122.942 1 67.81 ? C38 POV 102 C 1 
HETATM 11 C C39 POV . . . L 5 178.752 159.95 123.571 1 67.81 ? C39 POV 102 C 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           360 
_model_server_stats.encode_time_ms          54 
_model_server_stats.element_count           11 
#