data_7K0R
#
_model_server_result.job_id            O6dJ09cSYzXCGBYoR8X-qw 
_model_server_result.datetime_utc      '2024-11-08 16:39:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7k0r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":401}' 
#
_entry.id    7K0R 
#
_exptl.entry_id    7K0R 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              324.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "URIDINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7K0R 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7K0R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 Q N N 
#
_chem_comp.formula           'C9 H13 N2 O9 P' 
_chem_comp.formula_weight    324.181 
_chem_comp.id                U5P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "URIDINE-5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 U5P sing 360 n n 
N1 C6 U5P sing 361 n n 
N1 C1' U5P sing 362 n n 
C2 N3 U5P sing 363 n n 
C2 O2 U5P doub 364 n n 
N3 C4 U5P sing 365 n n 
N3 HN3 U5P sing 366 n n 
C4 C5 U5P sing 367 n n 
C4 O4 U5P doub 368 n n 
C5 C6 U5P doub 369 n n 
C5 H5 U5P sing 370 n n 
C6 H6 U5P sing 371 n n 
C1' C2' U5P sing 372 n n 
C1' O4' U5P sing 373 n n 
C1' H1' U5P sing 374 n n 
C2' O2' U5P sing 375 n n 
C2' C3' U5P sing 376 n n 
C2' H2' U5P sing 377 n n 
O2' HO2' U5P sing 378 n n 
C3' C4' U5P sing 379 n n 
C3' O3' U5P sing 380 n n 
C3' H3' U5P sing 381 n n 
C4' O4' U5P sing 382 n n 
C4' C5' U5P sing 383 n n 
C4' H4' U5P sing 384 n n 
O3' HO3' U5P sing 385 n n 
C5' O5' U5P sing 386 n n 
C5' "H5'1" U5P sing 387 n n 
C5' "H5'2" U5P sing 388 n n 
O5' P U5P sing 389 n n 
P O1P U5P doub 390 n n 
P O2P U5P sing 391 n n 
P O3P U5P sing 392 n n 
O2P HOP2 U5P sing 393 n n 
O3P HOP3 U5P sing 394 n n 
#
_atom_sites.entry_id                     7K0R 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 U5P A 1 401 401 U5P U5P . 
H 3 PO4 A 1 402 402 PO4 PO4 . 
I 2 U5P B 1 401 401 U5P U5P . 
J 3 PO4 B 1 402 402 PO4 PO4 . 
K 2 U5P C 1 401 401 U5P U5P . 
L 3 PO4 C 1 402 402 PO4 PO4 . 
M 2 U5P D 1 401 401 U5P U5P . 
N 3 PO4 D 1 402 402 PO4 PO4 . 
O 2 U5P E 1 401 401 U5P U5P . 
P 3 PO4 E 1 402 402 PO4 PO4 . 
Q 2 U5P F 1 401 401 U5P U5P . 
R 3 PO4 F 1 402 402 PO4 PO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 U5P . . . G 2 173.649 136.523 121.563 1 135.42 ? N1 U5P 401 A 1 
HETATM 2 C C2 U5P . . . G 2 173.341 137.837 121.303 1 135.42 ? C2 U5P 401 A 1 
HETATM 3 N N3 U5P . . . G 2 173.754 138.705 122.273 1 135.42 ? N3 U5P 401 A 1 
HETATM 4 C C4 U5P . . . G 2 174.416 138.433 123.446 1 135.42 ? C4 U5P 401 A 1 
HETATM 5 C C5 U5P . . . G 2 174.696 137.056 123.643 1 135.42 ? C5 U5P 401 A 1 
HETATM 6 C C6 U5P . . . G 2 174.306 136.185 122.716 1 135.42 ? C6 U5P 401 A 1 
HETATM 7 O O2 U5P . . . G 2 172.755 138.221 120.308 1 135.42 ? O2 U5P 401 A 1 
HETATM 8 O O4 U5P . . . G 2 174.713 139.347 124.212 1 135.42 ? O4 U5P 401 A 1 
HETATM 9 C C1' U5P . . . G 2 173.264 135.478 120.606 1 135.42 ? C1' U5P 401 A 1 
HETATM 10 C C2' U5P . . . G 2 174.274 135.272 119.47 1 135.42 ? C2' U5P 401 A 1 
HETATM 11 O O2' U5P . . . G 2 173.836 135.901 118.287 1 135.42 ? O2' U5P 401 A 1 
HETATM 12 C C3' U5P . . . G 2 174.359 133.754 119.355 1 135.42 ? C3' U5P 401 A 1 
HETATM 13 C C4' U5P . . . G 2 174.093 133.292 120.77 1 135.42 ? C4' U5P 401 A 1 
HETATM 14 O O3' U5P . . . G 2 173.317 133.293 118.501 1 135.42 ? O3' U5P 401 A 1 
HETATM 15 O O4' U5P . . . G 2 173.174 134.258 121.321 1 135.42 ? O4' U5P 401 A 1 
HETATM 16 C C5' U5P . . . G 2 175.309 133.202 121.656 1 135.42 ? C5' U5P 401 A 1 
HETATM 17 O O5' U5P . . . G 2 176.012 131.98 121.477 1 135.42 ? O5' U5P 401 A 1 
HETATM 18 P P U5P . . . G 2 177.27 131.634 122.387 1 135.42 ? P U5P 401 A 1 
HETATM 19 O O1P U5P . . . G 2 177.655 130.254 121.914 1 135.42 ? O1P U5P 401 A 1 
HETATM 20 O O2P U5P . . . G 2 176.76 131.604 123.806 1 135.42 ? O2P U5P 401 A 1 
HETATM 21 O O3P U5P . . . G 2 178.348 132.629 122.034 1 135.42 ? O3P U5P 401 A 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    78 
_model_server_stats.query_time_ms           539 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#