data_7K14 # _model_server_result.job_id qXLHhX9nXOy_bVq8p1eCqg _model_server_result.datetime_utc '2024-11-23 04:04:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k14 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":401}' # _entry.id 7K14 # _exptl.entry_id 7K14 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.049 _cell.angle_gamma 90 _cell.entry_id 7K14 _cell.length_a 94 _cell.length_b 211.93 _cell.length_c 94.35 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K14 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,O,P,X,Y,Z,AA 1 1 E,F,G,H,Q,R,S,T,U,V,W,BA,CA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N ? 2 T N N ? 2 V N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 91 n n N1 C10 FMN doub 92 n n C2 O2 FMN doub 93 n n C2 N3 FMN sing 94 n n N3 C4 FMN sing 95 n n N3 HN3 FMN sing 96 n n C4 O4 FMN doub 97 n n C4 C4A FMN sing 98 n n C4A N5 FMN doub 99 n n C4A C10 FMN sing 100 n n N5 C5A FMN sing 101 n n C5A C6 FMN doub 102 n y C5A C9A FMN sing 103 n y C6 C7 FMN sing 104 n y C6 H6 FMN sing 105 n n C7 C7M FMN sing 106 n n C7 C8 FMN doub 107 n y C7M HM71 FMN sing 108 n n C7M HM72 FMN sing 109 n n C7M HM73 FMN sing 110 n n C8 C8M FMN sing 111 n n C8 C9 FMN sing 112 n y C8M HM81 FMN sing 113 n n C8M HM82 FMN sing 114 n n C8M HM83 FMN sing 115 n n C9 C9A FMN doub 116 n y C9 H9 FMN sing 117 n n C9A N10 FMN sing 118 n n N10 C10 FMN sing 119 n n N10 C1' FMN sing 120 n n C1' C2' FMN sing 121 n n C1' "H1'1" FMN sing 122 n n C1' "H1'2" FMN sing 123 n n C2' O2' FMN sing 124 n n C2' C3' FMN sing 125 n n C2' H2' FMN sing 126 n n O2' HO2' FMN sing 127 n n C3' O3' FMN sing 128 n n C3' C4' FMN sing 129 n n C3' H3' FMN sing 130 n n O3' HO3' FMN sing 131 n n C4' O4' FMN sing 132 n n C4' C5' FMN sing 133 n n C4' H4' FMN sing 134 n n O4' HO4' FMN sing 135 n n C5' O5' FMN sing 136 n n C5' "H5'1" FMN sing 137 n n C5' "H5'2" FMN sing 138 n n O5' P FMN sing 139 n n P O1P FMN doub 140 n n P O2P FMN sing 141 n n P O3P FMN sing 142 n n O2P HOP2 FMN sing 143 n n O3P HOP3 FMN sing 144 n n # _atom_sites.entry_id 7K14 _atom_sites.fract_transf_matrix[1][1] 0.010638 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005909 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004719 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012124 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 FMN A 1 401 401 FMN FMN . J 3 03S A 1 402 501 03S 03S . K 2 FMN B 1 401 401 FMN FMN . L 3 03S B 1 402 501 03S 03S . M 2 FMN C 1 401 401 FMN FMN . N 3 03S C 1 402 501 03S 03S . O 2 FMN D 1 401 401 FMN FMN . P 3 03S D 1 402 501 03S 03S . Q 2 FMN E 1 401 401 FMN FMN . R 3 03S E 1 402 501 03S 03S . S 4 PO4 F 1 401 401 PO4 PO4 . T 2 FMN G 1 401 401 FMN FMN . U 5 CL G 1 402 501 CL CL . V 2 FMN H 1 401 401 FMN FMN . W 5 CL H 1 402 501 CL CL . X 6 HOH A 1 501 14 HOH HOH . X 6 HOH A 2 502 11 HOH HOH . X 6 HOH A 3 503 1 HOH HOH . Y 6 HOH B 1 501 9 HOH HOH . Y 6 HOH B 2 502 6 HOH HOH . Y 6 HOH B 3 503 13 HOH HOH . Y 6 HOH B 4 504 8 HOH HOH . Y 6 HOH B 5 505 5 HOH HOH . Z 6 HOH C 1 501 15 HOH HOH . AA 6 HOH D 1 501 3 HOH HOH . AA 6 HOH D 2 502 4 HOH HOH . AA 6 HOH D 3 503 7 HOH HOH . BA 6 HOH E 1 501 12 HOH HOH . CA 6 HOH F 1 501 10 HOH HOH . CA 6 HOH F 2 502 2 HOH HOH . CA 6 HOH F 3 503 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . Q 2 -17.526 -38.425 -14.852 0.92 67.63 ? N1 FMN 401 E 1 HETATM 2 C C2 FMN . . . Q 2 -17.853 -39.615 -15.363 0.92 67.97 ? C2 FMN 401 E 1 HETATM 3 O O2 FMN . . . Q 2 -16.963 -40.353 -15.761 0.92 69.91 ? O2 FMN 401 E 1 HETATM 4 N N3 FMN . . . Q 2 -19.109 -40.077 -15.445 0.92 68.68 ? N3 FMN 401 E 1 HETATM 5 C C4 FMN . . . Q 2 -20.154 -39.363 -14.976 0.92 68.04 ? C4 FMN 401 E 1 HETATM 6 O O4 FMN . . . Q 2 -21.289 -39.776 -15.078 0.92 68.8 ? O4 FMN 401 E 1 HETATM 7 C C4A FMN . . . Q 2 -19.863 -38.048 -14.37 0.92 66.05 ? C4A FMN 401 E 1 HETATM 8 N N5 FMN . . . Q 2 -20.806 -37.294 -13.871 0.92 64.24 ? N5 FMN 401 E 1 HETATM 9 C C5A FMN . . . Q 2 -20.502 -36.108 -13.339 0.92 64.55 ? C5A FMN 401 E 1 HETATM 10 C C6 FMN . . . Q 2 -21.527 -35.337 -12.766 0.92 62.04 ? C6 FMN 401 E 1 HETATM 11 C C7 FMN . . . Q 2 -21.226 -34.167 -12.15 0.92 63.54 ? C7 FMN 401 E 1 HETATM 12 C C7M FMN . . . Q 2 -22.331 -33.401 -11.474 0.92 62.02 ? C7M FMN 401 E 1 HETATM 13 C C8 FMN . . . Q 2 -19.907 -33.704 -12.1 0.92 66.67 ? C8 FMN 401 E 1 HETATM 14 C C8M FMN . . . Q 2 -19.577 -32.432 -11.36 0.92 66.05 ? C8M FMN 401 E 1 HETATM 15 C C9 FMN . . . Q 2 -18.884 -34.421 -12.683 0.92 68.11 ? C9 FMN 401 E 1 HETATM 16 C C9A FMN . . . Q 2 -19.162 -35.64 -13.304 0.92 67.63 ? C9A FMN 401 E 1 HETATM 17 N N10 FMN . . . Q 2 -18.135 -36.411 -13.835 0.92 68.68 ? N10 FMN 401 E 1 HETATM 18 C C10 FMN . . . Q 2 -18.449 -37.62 -14.358 0.92 68.13 ? C10 FMN 401 E 1 HETATM 19 C C1' FMN . . . Q 2 -16.743 -35.955 -13.862 0.92 69.02 ? C1' FMN 401 E 1 HETATM 20 C C2' FMN . . . Q 2 -16.377 -35.127 -15.106 0.92 71.08 ? C2' FMN 401 E 1 HETATM 21 O O2' FMN . . . Q 2 -17.422 -35.212 -16.069 0.92 70.36 ? O2' FMN 401 E 1 HETATM 22 C C3' FMN . . . Q 2 -15.118 -35.624 -15.835 0.92 72.46 ? C3' FMN 401 E 1 HETATM 23 O O3' FMN . . . Q 2 -15.265 -37.015 -16.133 0.92 73.59 ? O3' FMN 401 E 1 HETATM 24 C C4' FMN . . . Q 2 -13.809 -35.379 -15.07 0.92 74.25 ? C4' FMN 401 E 1 HETATM 25 O O4' FMN . . . Q 2 -13.818 -36.027 -13.793 0.92 74.78 ? O4' FMN 401 E 1 HETATM 26 C C5' FMN . . . Q 2 -13.533 -33.88 -14.894 0.92 72.84 ? C5' FMN 401 E 1 HETATM 27 O O5' FMN . . . Q 2 -12.122 -33.679 -14.728 0.92 72.66 ? O5' FMN 401 E 1 HETATM 28 P P FMN . . . Q 2 -11.471 -32.279 -14.285 0.92 69.98 ? P FMN 401 E 1 HETATM 29 O O1P FMN . . . Q 2 -10.001 -32.444 -14.173 0.92 72.4 ? O1P FMN 401 E 1 HETATM 30 O O2P FMN . . . Q 2 -12.128 -31.751 -12.916 0.92 71.32 ? O2P FMN 401 E 1 HETATM 31 O O3P FMN . . . Q 2 -11.75 -31.196 -15.426 0.92 69.41 ? O3P FMN 401 E 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #