data_7K15 # _model_server_result.job_id ObEWoXzcyFB3E3U7VVw9dg _model_server_result.datetime_utc '2024-12-23 05:10:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k15 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2101}' # _entry.id 7K15 # _exptl.entry_id 7K15 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 498.566 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(tert-butylsulfonyl)-4-fluoro-2-{(3S,4R)-4-hydroxy-3-[(pyridin-2-yl)methyl]-3,4-dihydro-2H-1-benzopyran-7-yl}benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7K15 _cell.length_a 70.77 _cell.length_b 82.67 _cell.length_c 127.48 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K15 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 113 A CYS 90 1_555 A SG CYS 191 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A OD1 ASP 87 A ASP 64 1_555 C NA NA . A NA 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc2 A OG SER 127 A SER 104 1_555 C NA NA . A NA 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc3 C NA NA . A NA 2102 1_555 K O HOH . A HOH 2205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? # _chem_comp.formula 'C26 H27 F N2 O5 S' _chem_comp.formula_weight 498.566 _chem_comp.id VRJ _chem_comp.mon_nstd_flag . _chem_comp.name N-(tert-butylsulfonyl)-4-fluoro-2-{(3S,4R)-4-hydroxy-3-[(pyridin-2-yl)methyl]-3,4-dihydro-2H-1-benzopyran-7-yl}benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F1 C18 VRJ sing 693 n n C18 C21 VRJ doub 694 n y C18 C17 VRJ sing 695 n y C21 C20 VRJ sing 696 n y C17 C16 VRJ doub 697 n y C20 C19 VRJ doub 698 n y C16 C19 VRJ sing 699 n y C16 C15 VRJ sing 700 n n C19 C22 VRJ sing 701 n n C4 C15 VRJ doub 702 n y C4 C3 VRJ sing 703 n y C15 C14 VRJ sing 704 n y C22 N2 VRJ sing 705 n n C22 O3 VRJ doub 706 n n C13 N1 VRJ doub 707 n y C13 C12 VRJ sing 708 n y C3 C2 VRJ doub 709 n y N2 S1 VRJ sing 710 n n N1 C9 VRJ sing 711 n y C14 C1 VRJ doub 712 n y C12 C11 VRJ doub 713 n y C26 C23 VRJ sing 714 n n C2 C1 VRJ sing 715 n y C2 C5 VRJ sing 716 n n C1 O1 VRJ sing 717 n n C24 C23 VRJ sing 718 n n C9 C8 VRJ sing 719 n n C9 C10 VRJ doub 720 n y O4 S1 VRJ doub 721 n n S1 C23 VRJ sing 722 n n S1 O5 VRJ doub 723 n n C23 C25 VRJ sing 724 n n C11 C10 VRJ sing 725 n y C8 C6 VRJ sing 726 n n C5 C6 VRJ sing 727 n n C5 O2 VRJ sing 728 n n O1 C7 VRJ sing 729 n n C6 C7 VRJ sing 730 n n C4 H1 VRJ sing 731 n n C3 H2 VRJ sing 732 n n O2 H3 VRJ sing 733 n n C10 H4 VRJ sing 734 n n C11 H5 VRJ sing 735 n n C12 H6 VRJ sing 736 n n C13 H7 VRJ sing 737 n n C14 H8 VRJ sing 738 n n C17 H9 VRJ sing 739 n n C20 H10 VRJ sing 740 n n C21 H11 VRJ sing 741 n n C24 H12 VRJ sing 742 n n C24 H13 VRJ sing 743 n n C24 H14 VRJ sing 744 n n C25 H15 VRJ sing 745 n n C25 H16 VRJ sing 746 n n C25 H17 VRJ sing 747 n n C26 H18 VRJ sing 748 n n C26 H19 VRJ sing 749 n n C26 H20 VRJ sing 750 n n C5 H21 VRJ sing 751 n n C6 H22 VRJ sing 752 n n C7 H23 VRJ sing 753 n n C7 H24 VRJ sing 754 n n C8 H25 VRJ sing 755 n n C8 H26 VRJ sing 756 n n N2 H27 VRJ sing 757 n n # _atom_sites.entry_id 7K15 _atom_sites.fract_transf_matrix[1][1] 0.01413 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012096 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007844 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VRJ A 1 2101 2101 VRJ VRJ . C 3 NA A 1 2102 2102 NA NA . D 4 FMN A 1 2103 2103 FMN FMN . E 5 OLA A 1 2104 2104 OLA OLA . F 6 OLC A 1 2105 2105 OLC OLC . G 6 OLC A 1 2106 2106 OLC OLC . H 7 1PE A 1 2107 2107 1PE 1PE . I 8 2PE A 1 2108 2108 2PE 2PE . J 9 P6G A 1 2109 2109 P6G P6G . K 10 HOH A 1 2201 2205 HOH HOH . K 10 HOH A 2 2202 2202 HOH HOH . K 10 HOH A 3 2203 2203 HOH HOH . K 10 HOH A 4 2204 2204 HOH HOH . K 10 HOH A 5 2205 2201 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 VRJ . . . B 2 1.772 -13.53 20.916 1 94.83 ? O5 VRJ 2101 A 1 HETATM 2 O O4 VRJ . . . B 2 2.541 -15.635 19.784 1 80.14 ? O4 VRJ 2101 A 1 HETATM 3 C C4 VRJ . . . B 2 3.689 -8.905 17.217 1 49.59 ? C4 VRJ 2101 A 1 HETATM 4 C C3 VRJ . . . B 2 3.857 -7.937 18.205 1 62.5 ? C3 VRJ 2101 A 1 HETATM 5 O O3 VRJ . . . B 2 3.873 -13.189 18.443 1 55.38 ? O3 VRJ 2101 A 1 HETATM 6 C C2 VRJ . . . B 2 3.2 -8.046 19.434 1 71.35 ? C2 VRJ 2101 A 1 HETATM 7 O O2 VRJ . . . B 2 4.508 -7.407 21.288 1 76.2 ? O2 VRJ 2101 A 1 HETATM 8 C C1 VRJ . . . B 2 2.37 -9.152 19.647 1 76.15 ? C1 VRJ 2101 A 1 HETATM 9 O O1 VRJ . . . B 2 1.658 -9.365 20.837 1 86.02 ? O1 VRJ 2101 A 1 HETATM 10 C C10 VRJ . . . B 2 2.013 -3.917 20.731 1 61.51 ? C10 VRJ 2101 A 1 HETATM 11 C C11 VRJ . . . B 2 2.432 -2.784 20.037 1 71.71 ? C11 VRJ 2101 A 1 HETATM 12 C C12 VRJ . . . B 2 2.278 -2.728 18.657 1 54.93 ? C12 VRJ 2101 A 1 HETATM 13 C C13 VRJ . . . B 2 1.713 -3.826 18.019 1 63.19 ? C13 VRJ 2101 A 1 HETATM 14 C C14 VRJ . . . B 2 2.206 -10.113 18.651 1 66 ? C14 VRJ 2101 A 1 HETATM 15 C C15 VRJ . . . B 2 2.861 -10.023 17.412 1 50.87 ? C15 VRJ 2101 A 1 HETATM 16 C C16 VRJ . . . B 2 2.707 -11.03 16.347 1 58.09 ? C16 VRJ 2101 A 1 HETATM 17 C C17 VRJ . . . B 2 2.593 -10.558 15.029 1 68.36 ? C17 VRJ 2101 A 1 HETATM 18 C C18 VRJ . . . B 2 2.455 -11.417 13.947 1 82.73 ? C18 VRJ 2101 A 1 HETATM 19 C C19 VRJ . . . B 2 2.679 -12.452 16.52 1 72.05 ? C19 VRJ 2101 A 1 HETATM 20 C C20 VRJ . . . B 2 2.543 -13.304 15.409 1 69.28 ? C20 VRJ 2101 A 1 HETATM 21 C C21 VRJ . . . B 2 2.429 -12.79 14.124 1 82.01 ? C21 VRJ 2101 A 1 HETATM 22 C C22 VRJ . . . B 2 2.804 -13.131 17.848 1 62.36 ? C22 VRJ 2101 A 1 HETATM 23 C C23 VRJ . . . B 2 -0.077 -15.2 20.005 1 89.37 ? C23 VRJ 2101 A 1 HETATM 24 C C24 VRJ . . . B 2 -1.067 -14.155 19.475 1 82.28 ? C24 VRJ 2101 A 1 HETATM 25 C C25 VRJ . . . B 2 -0.411 -15.496 21.476 1 77.13 ? C25 VRJ 2101 A 1 HETATM 26 C C26 VRJ . . . B 2 -0.229 -16.477 19.166 1 92.93 ? C26 VRJ 2101 A 1 HETATM 27 C C5 VRJ . . . B 2 3.379 -7.016 20.509 1 65.58 ? C5 VRJ 2101 A 1 HETATM 28 C C6 VRJ . . . B 2 2.154 -6.954 21.43 1 67.99 ? C6 VRJ 2101 A 1 HETATM 29 C C7 VRJ . . . B 2 1.811 -8.383 21.885 1 75.24 ? C7 VRJ 2101 A 1 HETATM 30 C C8 VRJ . . . B 2 0.986 -6.226 20.732 1 68.53 ? C8 VRJ 2101 A 1 HETATM 31 C C9 VRJ . . . B 2 1.451 -4.982 20.014 1 69.46 ? C9 VRJ 2101 A 1 HETATM 32 F F1 VRJ . . . B 2 2.345 -10.903 12.711 1 105.68 ? F1 VRJ 2101 A 1 HETATM 33 N N1 VRJ . . . B 2 1.301 -4.943 18.662 1 63.25 ? N1 VRJ 2101 A 1 HETATM 34 N N2 VRJ . . . B 2 1.605 -13.709 18.372 1 66 ? N2 VRJ 2101 A 1 HETATM 35 S S1 VRJ . . . B 2 1.61 -14.527 19.877 1 85.85 ? S1 VRJ 2101 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 539 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 35 #