data_7K15 # _model_server_result.job_id d2jt0kfsgGkxsGtVEGdKaA _model_server_result.datetime_utc '2024-10-24 04:29:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k15 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2103}' # _entry.id 7K15 # _exptl.entry_id 7K15 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7K15 _cell.length_a 70.77 _cell.length_b 82.67 _cell.length_c 127.48 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K15 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 113 A CYS 90 1_555 A SG CYS 191 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A OD1 ASP 87 A ASP 64 1_555 C NA NA . A NA 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc2 A OG SER 127 A SER 104 1_555 C NA NA . A NA 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc3 C NA NA . A NA 2102 1_555 K O HOH . A HOH 2205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 185 n n N1 C10 FMN doub 186 n n C2 O2 FMN doub 187 n n C2 N3 FMN sing 188 n n N3 C4 FMN sing 189 n n N3 HN3 FMN sing 190 n n C4 O4 FMN doub 191 n n C4 C4A FMN sing 192 n n C4A N5 FMN doub 193 n n C4A C10 FMN sing 194 n n N5 C5A FMN sing 195 n n C5A C6 FMN doub 196 n y C5A C9A FMN sing 197 n y C6 C7 FMN sing 198 n y C6 H6 FMN sing 199 n n C7 C7M FMN sing 200 n n C7 C8 FMN doub 201 n y C7M HM71 FMN sing 202 n n C7M HM72 FMN sing 203 n n C7M HM73 FMN sing 204 n n C8 C8M FMN sing 205 n n C8 C9 FMN sing 206 n y C8M HM81 FMN sing 207 n n C8M HM82 FMN sing 208 n n C8M HM83 FMN sing 209 n n C9 C9A FMN doub 210 n y C9 H9 FMN sing 211 n n C9A N10 FMN sing 212 n n N10 C10 FMN sing 213 n n N10 C1' FMN sing 214 n n C1' C2' FMN sing 215 n n C1' "H1'1" FMN sing 216 n n C1' "H1'2" FMN sing 217 n n C2' O2' FMN sing 218 n n C2' C3' FMN sing 219 n n C2' H2' FMN sing 220 n n O2' HO2' FMN sing 221 n n C3' O3' FMN sing 222 n n C3' C4' FMN sing 223 n n C3' H3' FMN sing 224 n n O3' HO3' FMN sing 225 n n C4' O4' FMN sing 226 n n C4' C5' FMN sing 227 n n C4' H4' FMN sing 228 n n O4' HO4' FMN sing 229 n n C5' O5' FMN sing 230 n n C5' "H5'1" FMN sing 231 n n C5' "H5'2" FMN sing 232 n n O5' P FMN sing 233 n n P O1P FMN doub 234 n n P O2P FMN sing 235 n n P O3P FMN sing 236 n n O2P HOP2 FMN sing 237 n n O3P HOP3 FMN sing 238 n n # _atom_sites.entry_id 7K15 _atom_sites.fract_transf_matrix[1][1] 0.01413 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012096 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007844 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VRJ A 1 2101 2101 VRJ VRJ . C 3 NA A 1 2102 2102 NA NA . D 4 FMN A 1 2103 2103 FMN FMN . E 5 OLA A 1 2104 2104 OLA OLA . F 6 OLC A 1 2105 2105 OLC OLC . G 6 OLC A 1 2106 2106 OLC OLC . H 7 1PE A 1 2107 2107 1PE 1PE . I 8 2PE A 1 2108 2108 2PE 2PE . J 9 P6G A 1 2109 2109 P6G P6G . K 10 HOH A 1 2201 2205 HOH HOH . K 10 HOH A 2 2202 2202 HOH HOH . K 10 HOH A 3 2203 2203 HOH HOH . K 10 HOH A 4 2204 2204 HOH HOH . K 10 HOH A 5 2205 2201 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 4 -54.622 51.409 21.765 1 43.35 ? N1 FMN 2103 A 1 HETATM 2 C C2 FMN . . . D 4 -53.752 52.28 22.394 1 43.33 ? C2 FMN 2103 A 1 HETATM 3 O O2 FMN . . . D 4 -52.596 52.376 21.981 1 39.9 ? O2 FMN 2103 A 1 HETATM 4 N N3 FMN . . . D 4 -54.182 53.036 23.474 1 34.35 ? N3 FMN 2103 A 1 HETATM 5 C C4 FMN . . . D 4 -55.487 52.915 23.924 1 65.59 ? C4 FMN 2103 A 1 HETATM 6 O O4 FMN . . . D 4 -55.895 53.571 24.883 1 51.11 ? O4 FMN 2103 A 1 HETATM 7 C C4A FMN . . . D 4 -56.36 52.04 23.293 1 57.81 ? C4A FMN 2103 A 1 HETATM 8 N N5 FMN . . . D 4 -57.655 51.921 23.749 1 42.21 ? N5 FMN 2103 A 1 HETATM 9 C C5A FMN . . . D 4 -58.529 51.058 23.123 1 39.9 ? C5A FMN 2103 A 1 HETATM 10 C C6 FMN . . . D 4 -59.842 50.941 23.578 1 49.1 ? C6 FMN 2103 A 1 HETATM 11 C C7 FMN . . . D 4 -60.721 50.066 22.947 1 49.07 ? C7 FMN 2103 A 1 HETATM 12 C C7M FMN . . . D 4 -62.136 49.923 23.425 1 60.8 ? C7M FMN 2103 A 1 HETATM 13 C C8 FMN . . . D 4 -60.288 49.313 21.864 1 48.15 ? C8 FMN 2103 A 1 HETATM 14 C C8M FMN . . . D 4 -61.233 48.372 21.18 1 58.44 ? C8M FMN 2103 A 1 HETATM 15 C C9 FMN . . . D 4 -58.982 49.434 21.411 1 62.76 ? C9 FMN 2103 A 1 HETATM 16 C C9A FMN . . . D 4 -58.095 50.305 22.038 1 43.49 ? C9A FMN 2103 A 1 HETATM 17 N N10 FMN . . . D 4 -56.79 50.417 21.589 1 47.68 ? N10 FMN 2103 A 1 HETATM 18 C C10 FMN . . . D 4 -55.923 51.288 22.21 1 48.43 ? C10 FMN 2103 A 1 HETATM 19 C C1' FMN . . . D 4 -56.314 49.616 20.409 1 59.76 ? C1' FMN 2103 A 1 HETATM 20 C C2' FMN . . . D 4 -55.892 48.196 20.773 1 53.24 ? C2' FMN 2103 A 1 HETATM 21 O O2' FMN . . . D 4 -54.777 48.22 21.636 1 51.67 ? O2' FMN 2103 A 1 HETATM 22 C C3' FMN . . . D 4 -55.547 47.446 19.492 1 52.11 ? C3' FMN 2103 A 1 HETATM 23 O O3' FMN . . . D 4 -56.73 47.056 18.833 1 49.26 ? O3' FMN 2103 A 1 HETATM 24 C C4' FMN . . . D 4 -54.716 46.203 19.764 1 61.88 ? C4' FMN 2103 A 1 HETATM 25 O O4' FMN . . . D 4 -54.422 45.577 18.535 1 58.78 ? O4' FMN 2103 A 1 HETATM 26 C C5' FMN . . . D 4 -55.446 45.218 20.668 1 34.26 ? C5' FMN 2103 A 1 HETATM 27 O O5' FMN . . . D 4 -54.678 44.037 20.685 1 52.4 ? O5' FMN 2103 A 1 HETATM 28 P P FMN . . . D 4 -55.192 42.68 21.382 1 34.14 ? P FMN 2103 A 1 HETATM 29 O O1P FMN . . . D 4 -56.652 42.84 21.722 1 65.34 ? O1P FMN 2103 A 1 HETATM 30 O O2P FMN . . . D 4 -55.022 41.549 20.4 1 52.86 ? O2P FMN 2103 A 1 HETATM 31 O O3P FMN . . . D 4 -54.4 42.354 22.624 1 58.4 ? O3P FMN 2103 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #