data_7K15 # _model_server_result.job_id '_XgZgjzBchEyYG5uYTWk5w' _model_server_result.datetime_utc '2024-12-23 05:34:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k15 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2105}' # _entry.id 7K15 # _exptl.entry_id 7K15 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7K15 _cell.length_a 70.77 _cell.length_b 82.67 _cell.length_c 127.48 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K15 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 113 A CYS 90 1_555 A SG CYS 191 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A OD1 ASP 87 A ASP 64 1_555 C NA NA . A NA 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc2 A OG SER 127 A SER 104 1_555 C NA NA . A NA 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc3 C NA NA . A NA 2102 1_555 K O HOH . A HOH 2205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 446 n n C10 C9 OLC doub 447 n n C10 C11 OLC sing 448 n n C9 C8 OLC sing 449 n n C17 C16 OLC sing 450 z n C11 C12 OLC sing 451 n n C8 C7 OLC sing 452 n n C24 C22 OLC sing 453 n n C24 O25 OLC sing 454 n n C16 C15 OLC sing 455 n n C12 C13 OLC sing 456 n n C7 C6 OLC sing 457 n n C15 C14 OLC sing 458 n n C13 C14 OLC sing 459 n n C6 C5 OLC sing 460 n n C5 C4 OLC sing 461 n n C4 C3 OLC sing 462 n n C3 C2 OLC sing 463 n n C2 C1 OLC sing 464 n n C21 C22 OLC sing 465 n n C21 O20 OLC sing 466 n n C1 O19 OLC doub 467 n n C1 O20 OLC sing 468 n n C22 O23 OLC sing 469 n n C18 H18 OLC sing 470 n n C18 H18A OLC sing 471 n n C18 H18B OLC sing 472 n n C10 H10 OLC sing 473 n n C9 H9 OLC sing 474 n n C17 H17 OLC sing 475 n n C17 H17A OLC sing 476 n n C11 H11 OLC sing 477 n n C11 H11A OLC sing 478 n n C8 H8 OLC sing 479 n n C8 H8A OLC sing 480 n n C24 H24 OLC sing 481 n n C24 H24A OLC sing 482 n n C16 H16 OLC sing 483 n n C16 H16A OLC sing 484 n n C12 H12 OLC sing 485 n n C12 H12A OLC sing 486 n n C7 H7 OLC sing 487 n n C7 H7A OLC sing 488 n n C15 H15 OLC sing 489 n n C15 H15A OLC sing 490 n n C13 H13 OLC sing 491 n n C13 H13A OLC sing 492 n n C6 H6 OLC sing 493 n n C6 H6A OLC sing 494 n n C14 H14 OLC sing 495 n n C14 H14A OLC sing 496 n n C5 H5 OLC sing 497 n n C5 H5A OLC sing 498 n n C4 H4 OLC sing 499 n n C4 H4A OLC sing 500 n n C3 H3 OLC sing 501 n n C3 H3A OLC sing 502 n n C2 H2 OLC sing 503 n n C2 H2A OLC sing 504 n n C21 H21 OLC sing 505 n n C21 H21A OLC sing 506 n n C22 H22 OLC sing 507 n n O25 HO25 OLC sing 508 n n O23 HO23 OLC sing 509 n n # _atom_sites.entry_id 7K15 _atom_sites.fract_transf_matrix[1][1] 0.01413 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012096 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007844 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VRJ A 1 2101 2101 VRJ VRJ . C 3 NA A 1 2102 2102 NA NA . D 4 FMN A 1 2103 2103 FMN FMN . E 5 OLA A 1 2104 2104 OLA OLA . F 6 OLC A 1 2105 2105 OLC OLC . G 6 OLC A 1 2106 2106 OLC OLC . H 7 1PE A 1 2107 2107 1PE 1PE . I 8 2PE A 1 2108 2108 2PE 2PE . J 9 P6G A 1 2109 2109 P6G P6G . K 10 HOH A 1 2201 2205 HOH HOH . K 10 HOH A 2 2202 2202 HOH HOH . K 10 HOH A 3 2203 2203 HOH HOH . K 10 HOH A 4 2204 2204 HOH HOH . K 10 HOH A 5 2205 2201 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C24 OLC . . . F 6 -14.272 15.179 36.345 1 92.64 ? C24 OLC 2105 A 1 HETATM 2 C C6 OLC . . . F 6 -5.765 14.072 36.373 1 32.09 ? C6 OLC 2105 A 1 HETATM 3 C C5 OLC . . . F 6 -6.932 14.654 35.594 1 40.21 ? C5 OLC 2105 A 1 HETATM 4 C C4 OLC . . . F 6 -7.097 16.134 35.917 1 29.26 ? C4 OLC 2105 A 1 HETATM 5 C C3 OLC . . . F 6 -8.566 16.502 35.759 1 50.28 ? C3 OLC 2105 A 1 HETATM 6 C C2 OLC . . . F 6 -9.451 15.738 36.751 1 72.79 ? C2 OLC 2105 A 1 HETATM 7 C C21 OLC . . . F 6 -12.045 15.162 37.541 1 99.77 ? C21 OLC 2105 A 1 HETATM 8 C C1 OLC . . . F 6 -10.296 16.746 37.455 1 85.9 ? C1 OLC 2105 A 1 HETATM 9 C C22 OLC . . . F 6 -13.586 15.187 37.752 1 104.55 ? C22 OLC 2105 A 1 HETATM 10 O O19 OLC . . . F 6 -9.898 17.726 38.069 1 80.67 ? O19 OLC 2105 A 1 HETATM 11 O O25 OLC . . . F 6 -15.378 16.04 36.449 1 56.58 ? O25 OLC 2105 A 1 HETATM 12 O O23 OLC . . . F 6 -13.981 14.106 38.526 1 61.91 ? O23 OLC 2105 A 1 HETATM 13 O O20 OLC . . . F 6 -11.649 16.521 37.386 1 91.89 ? O20 OLC 2105 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 13 #