data_7K15 # _model_server_result.job_id N-0F6H9dHV-VltYbSFkWVg _model_server_result.datetime_utc '2024-12-23 05:51:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k15 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":2108}' # _entry.id 7K15 # _exptl.entry_id 7K15 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.488 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NONAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7K15 _cell.length_a 70.77 _cell.length_b 82.67 _cell.length_c 127.48 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K15 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 113 A CYS 90 1_555 A SG CYS 191 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A OD1 ASP 87 A ASP 64 1_555 C NA NA . A NA 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc2 A OG SER 127 A SER 104 1_555 C NA NA . A NA 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc3 C NA NA . A NA 2102 1_555 K O HOH . A HOH 2205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? # _chem_comp.formula 'C18 H38 O10' _chem_comp.formula_weight 414.488 _chem_comp.id 2PE _chem_comp.mon_nstd_flag . _chem_comp.name 'NONAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 2PE sing 38 n n O1 HO1 2PE sing 39 n n C2 C3 2PE sing 40 n n C2 H21 2PE sing 41 n n C2 H22 2PE sing 42 n n C3 O4 2PE sing 43 n n C3 H31 2PE sing 44 n n C3 H32 2PE sing 45 n n O4 C5 2PE sing 46 n n C5 C6 2PE sing 47 n n C5 H51 2PE sing 48 n n C5 H52 2PE sing 49 n n C6 O7 2PE sing 50 n n C6 H61 2PE sing 51 n n C6 H62 2PE sing 52 n n O7 C8 2PE sing 53 n n C8 C9 2PE sing 54 n n C8 H81 2PE sing 55 n n C8 H82 2PE sing 56 n n C9 O10 2PE sing 57 n n C9 H91 2PE sing 58 n n C9 H92 2PE sing 59 n n O10 C11 2PE sing 60 n n C11 C12 2PE sing 61 n n C11 H111 2PE sing 62 n n C11 H112 2PE sing 63 n n C12 O13 2PE sing 64 n n C12 H121 2PE sing 65 n n C12 H122 2PE sing 66 n n O13 C14 2PE sing 67 n n C14 C15 2PE sing 68 n n C14 H141 2PE sing 69 n n C14 H142 2PE sing 70 n n C15 O16 2PE sing 71 n n C15 H151 2PE sing 72 n n C15 H152 2PE sing 73 n n O16 C17 2PE sing 74 n n C17 C18 2PE sing 75 n n C17 H171 2PE sing 76 n n C17 H172 2PE sing 77 n n C18 O19 2PE sing 78 n n C18 H181 2PE sing 79 n n C18 H182 2PE sing 80 n n O19 C20 2PE sing 81 n n C20 C21 2PE sing 82 n n C20 H201 2PE sing 83 n n C20 H202 2PE sing 84 n n C21 O22 2PE sing 85 n n C21 H211 2PE sing 86 n n C21 H212 2PE sing 87 n n O22 C23 2PE sing 88 n n C23 C24 2PE sing 89 n n C23 H231 2PE sing 90 n n C23 H232 2PE sing 91 n n C24 O25 2PE sing 92 n n C24 H241 2PE sing 93 n n C24 H242 2PE sing 94 n n O25 C26 2PE sing 95 n n C26 C27 2PE sing 96 n n C26 H261 2PE sing 97 n n C26 H262 2PE sing 98 n n C27 O28 2PE sing 99 n n C27 H271 2PE sing 100 n n C27 H272 2PE sing 101 n n O28 HO2 2PE sing 102 n n # _atom_sites.entry_id 7K15 _atom_sites.fract_transf_matrix[1][1] 0.01413 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012096 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007844 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VRJ A 1 2101 2101 VRJ VRJ . C 3 NA A 1 2102 2102 NA NA . D 4 FMN A 1 2103 2103 FMN FMN . E 5 OLA A 1 2104 2104 OLA OLA . F 6 OLC A 1 2105 2105 OLC OLC . G 6 OLC A 1 2106 2106 OLC OLC . H 7 1PE A 1 2107 2107 1PE 1PE . I 8 2PE A 1 2108 2108 2PE 2PE . J 9 P6G A 1 2109 2109 P6G P6G . K 10 HOH A 1 2201 2205 HOH HOH . K 10 HOH A 2 2202 2202 HOH HOH . K 10 HOH A 3 2203 2203 HOH HOH . K 10 HOH A 4 2204 2204 HOH HOH . K 10 HOH A 5 2205 2201 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 2PE . . . I 8 2.646 11.575 32.249 1 49.77 ? O1 2PE 2108 A 1 HETATM 2 C C2 2PE . . . I 8 2.093 12.729 31.677 1 58.33 ? C2 2PE 2108 A 1 HETATM 3 C C3 2PE . . . I 8 2.978 13.946 31.958 1 51.89 ? C3 2PE 2108 A 1 HETATM 4 O O4 2PE . . . I 8 2.929 14.27 33.32 1 67.14 ? O4 2PE 2108 A 1 HETATM 5 C C5 2PE . . . I 8 3.321 15.58 33.624 1 58.06 ? C5 2PE 2108 A 1 HETATM 6 C C6 2PE . . . I 8 2.147 16.534 33.414 1 66.65 ? C6 2PE 2108 A 1 HETATM 7 O O7 2PE . . . I 8 2.503 17.528 32.496 1 76.97 ? O7 2PE 2108 A 1 HETATM 8 C C8 2PE . . . I 8 1.65 18.639 32.496 1 56.84 ? C8 2PE 2108 A 1 HETATM 9 C C9 2PE . . . I 8 1.943 19.523 31.282 1 77.11 ? C9 2PE 2108 A 1 HETATM 10 O O10 2PE . . . I 8 3.04 20.359 31.533 1 74.97 ? O10 2PE 2108 A 1 HETATM 11 C C11 2PE . . . I 8 3.603 20.924 30.378 1 78.53 ? C11 2PE 2108 A 1 HETATM 12 C C12 2PE . . . I 8 4.646 19.972 29.787 1 77.58 ? C12 2PE 2108 A 1 HETATM 13 O O13 2PE . . . I 8 4.793 20.192 28.41 1 68.04 ? O13 2PE 2108 A 1 HETATM 14 C C14 2PE . . . I 8 4.797 19.022 27.635 1 60.04 ? C14 2PE 2108 A 1 HETATM 15 C C15 2PE . . . I 8 3.384 18.443 27.557 1 58.2 ? C15 2PE 2108 A 1 HETATM 16 O O16 2PE . . . I 8 3.1 18.03 26.249 1 66.14 ? O16 2PE 2108 A 1 HETATM 17 C C17 2PE . . . I 8 2.69 19.06 25.394 1 61.07 ? C17 2PE 2108 A 1 HETATM 18 C C18 2PE . . . I 8 1.943 18.48 24.194 1 55.85 ? C18 2PE 2108 A 1 HETATM 19 O O19 2PE . . . I 8 0.942 19.38 23.812 1 74.33 ? O19 2PE 2108 A 1 HETATM 20 C C20 2PE . . . I 8 0.165 18.956 22.731 1 74.26 ? C20 2PE 2108 A 1 HETATM 21 C C21 2PE . . . I 8 -1.308 19.001 23.13 1 70.46 ? C21 2PE 2108 A 1 HETATM 22 O O22 2PE . . . I 8 -1.935 20.073 22.489 1 79.27 ? O22 2PE 2108 A 1 HETATM 23 C C23 2PE . . . I 8 -1.739 21.296 23.139 1 97.18 ? C23 2PE 2108 A 1 HETATM 24 C C24 2PE . . . I 8 -2.241 22.44 22.262 1 87.94 ? C24 2PE 2108 A 1 HETATM 25 O O25 2PE . . . I 8 -2.091 23.643 22.961 1 91.97 ? O25 2PE 2108 A 1 HETATM 26 C C26 2PE . . . I 8 -3.066 23.862 23.942 1 78.84 ? C26 2PE 2108 A 1 HETATM 27 C C27 2PE . . . I 8 -2.397 24.296 25.246 1 72.49 ? C27 2PE 2108 A 1 HETATM 28 O O28 2PE . . . I 8 -1.433 25.283 24.996 1 73.5 ? O28 2PE 2108 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 455 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #