data_7K1D # _model_server_result.job_id mEqdT4dkECtCVOoogH7BuA _model_server_result.datetime_utc '2024-12-23 11:13:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k1d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1103}' # _entry.id 7K1D # _exptl.entry_id 7K1D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.105 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIETHYLENE DIOXIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7K1D _cell.length_a 264.313 _cell.length_b 264.313 _cell.length_c 90.468 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K1D _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 K N N ? 4 L N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 79 A HIS 108 1_555 C ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc2 A NE2 HIS 83 A HIS 112 1_555 C ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc3 A OE1 GLU 160 A GLU 189 1_555 C ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc4 C ZN ZN . A ZN 1101 1_555 D O38 VQD . A VQD 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc5 B NE2 HIS 79 B HIS 108 1_555 I ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc6 B NE2 HIS 83 B HIS 112 1_555 I ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc7 B OE1 GLU 160 B GLU 189 1_555 I ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc8 I ZN ZN . B ZN 1101 1_555 J O01 VQD . B VQD 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc9 I ZN ZN . B ZN 1101 1_555 J O38 VQD . B VQD 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? # _chem_comp.formula 'C4 H8 O2' _chem_comp.formula_weight 88.105 _chem_comp.id DIO _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIETHYLENE DIOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C1' DIO sing 83 n n C1 O1 DIO sing 84 n n C1 H11 DIO sing 85 n n C1 H12 DIO sing 86 n n C2 C2' DIO sing 87 n n C2 O1 DIO sing 88 n n C2 H21 DIO sing 89 n n C2 H22 DIO sing 90 n n C1' O1' DIO sing 91 n n C1' "H1'1" DIO sing 92 n n C1' "H1'2" DIO sing 93 n n C2' O1' DIO sing 94 n n C2' "H2'1" DIO sing 95 n n C2' "H2'2" DIO sing 96 n n # _atom_sites.entry_id 7K1D _atom_sites.fract_transf_matrix[1][1] 0.003783 _atom_sites.fract_transf_matrix[1][2] 0.002184 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004369 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011054 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1101 1101 ZN ZN . D 3 VQD A 1 1102 5 VQD BDM . E 4 DIO A 1 1103 4 DIO DIO . F 4 DIO A 1 1104 5 DIO DIO . G 4 DIO A 1 1105 6 DIO DIO . H 5 EPE A 1 1106 2 EPE EPE . I 2 ZN B 1 1101 1101 ZN ZN . J 3 VQD B 1 1102 1 VQD BDM . K 4 DIO B 1 1103 1 DIO DIO . L 4 DIO B 1 1104 2 DIO DIO . M 4 DIO B 1 1105 3 DIO DIO . N 5 EPE B 1 1106 1 EPE EPE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DIO . . . K 4 -85.671 -65.763 12.259 1 100.31 ? C1 DIO 1103 B 1 HETATM 2 C C2 DIO . . . K 4 -83.344 -65.7 12.57 1 88.43 ? C2 DIO 1103 B 1 HETATM 3 C C1' DIO . . . K 4 -85.556 -64.706 11.143 1 85.58 ? C1' DIO 1103 B 1 HETATM 4 C C2' DIO . . . K 4 -83.29 -64.598 11.486 1 91.52 ? C2' DIO 1103 B 1 HETATM 5 O O1 DIO . . . K 4 -84.503 -66.503 12.536 1 96.24 ? O1 DIO 1103 B 1 HETATM 6 O O1' DIO . . . K 4 -84.474 -63.836 11.345 1 75.65 ? O1' DIO 1103 B 1 HETATM 7 H H11 DIO . . . K 4 -86.447 -66.462 11.975 1 120.38 ? H11 DIO 1103 B 1 HETATM 8 H H12 DIO . . . K 4 -85.964 -65.253 13.169 1 120.38 ? H12 DIO 1103 B 1 HETATM 9 H H21 DIO . . . K 4 -83.292 -65.223 13.541 1 106.12 ? H21 DIO 1103 B 1 HETATM 10 H H22 DIO . . . K 4 -82.483 -66.343 12.442 1 106.12 ? H22 DIO 1103 B 1 HETATM 11 H "H1'1" DIO . . . K 4 -86.47 -64.127 11.114 1 102.7 ? "H1'1" DIO 1103 B 1 HETATM 12 H "H1'2" DIO . . . K 4 -85.425 -65.213 10.194 1 102.7 ? "H1'2" DIO 1103 B 1 HETATM 13 H "H2'1" DIO . . . K 4 -83.08 -65.071 10.535 1 109.82 ? "H2'1" DIO 1103 B 1 HETATM 14 H "H2'2" DIO . . . K 4 -82.482 -63.921 11.734 1 109.82 ? "H2'2" DIO 1103 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #