data_7K1D # _model_server_result.job_id 2uvZ2tKGGSI4ubObVstitQ _model_server_result.datetime_utc '2024-12-23 10:50:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k1d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1106}' # _entry.id 7K1D # _exptl.entry_id 7K1D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7K1D _cell.length_a 264.313 _cell.length_b 264.313 _cell.length_c 90.468 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K1D _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 79 A HIS 108 1_555 C ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc2 A NE2 HIS 83 A HIS 112 1_555 C ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc3 A OE1 GLU 160 A GLU 189 1_555 C ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc4 C ZN ZN . A ZN 1101 1_555 D O38 VQD . A VQD 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc5 B NE2 HIS 79 B HIS 108 1_555 I ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc6 B NE2 HIS 83 B HIS 112 1_555 I ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc7 B OE1 GLU 160 B GLU 189 1_555 I ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc8 I ZN ZN . B ZN 1101 1_555 J O01 VQD . B VQD 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc9 I ZN ZN . B ZN 1101 1_555 J O38 VQD . B VQD 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 97 n n N1 C6 EPE sing 98 n n N1 C9 EPE sing 99 n n C2 C3 EPE sing 100 n n C2 H21 EPE sing 101 n n C2 H22 EPE sing 102 n n C3 N4 EPE sing 103 n n C3 H31 EPE sing 104 n n C3 H32 EPE sing 105 n n N4 C5 EPE sing 106 n n N4 C7 EPE sing 107 n n C5 C6 EPE sing 108 n n C5 H51 EPE sing 109 n n C5 H52 EPE sing 110 n n C6 H61 EPE sing 111 n n C6 H62 EPE sing 112 n n C7 C8 EPE sing 113 n n C7 H71 EPE sing 114 n n C7 H72 EPE sing 115 n n C8 O8 EPE sing 116 n n C8 H81 EPE sing 117 n n C8 H82 EPE sing 118 n n O8 HO8 EPE sing 119 n n C9 C10 EPE sing 120 n n C9 H91 EPE sing 121 n n C9 H92 EPE sing 122 n n C10 S EPE sing 123 n n C10 H101 EPE sing 124 n n C10 H102 EPE sing 125 n n S O1S EPE doub 126 n n S O2S EPE doub 127 n n S O3S EPE sing 128 n n O3S HOS3 EPE sing 129 n n # _atom_sites.entry_id 7K1D _atom_sites.fract_transf_matrix[1][1] 0.003783 _atom_sites.fract_transf_matrix[1][2] 0.002184 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004369 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011054 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1101 1101 ZN ZN . D 3 VQD A 1 1102 5 VQD BDM . E 4 DIO A 1 1103 4 DIO DIO . F 4 DIO A 1 1104 5 DIO DIO . G 4 DIO A 1 1105 6 DIO DIO . H 5 EPE A 1 1106 2 EPE EPE . I 2 ZN B 1 1101 1101 ZN ZN . J 3 VQD B 1 1102 1 VQD BDM . K 4 DIO B 1 1103 1 DIO DIO . L 4 DIO B 1 1104 2 DIO DIO . M 4 DIO B 1 1105 3 DIO DIO . N 5 EPE B 1 1106 1 EPE EPE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . H 5 -89.103 -16.403 -4.519 1 74.25 ? N1 EPE 1106 A 1 HETATM 2 C C2 EPE . . . H 5 -88.977 -15.807 -5.866 1 88.2 ? C2 EPE 1106 A 1 HETATM 3 C C3 EPE . . . H 5 -88.804 -14.301 -5.79 1 90.68 ? C3 EPE 1106 A 1 HETATM 4 N N4 EPE . . . H 5 -87.693 -13.942 -4.931 1 92.67 ? N4 EPE 1106 A 1 HETATM 5 C C5 EPE . . . H 5 -87.449 -14.761 -3.76 1 81.74 ? C5 EPE 1106 A 1 HETATM 6 C C6 EPE . . . H 5 -88.701 -15.547 -3.396 1 71.4 ? C6 EPE 1106 A 1 HETATM 7 C C7 EPE . . . H 5 -86.615 -13.146 -5.481 1 87.87 ? C7 EPE 1106 A 1 HETATM 8 C C8 EPE . . . H 5 -87.153 -11.853 -6.08 1 87.36 ? C8 EPE 1106 A 1 HETATM 9 O O8 EPE . . . H 5 -86.401 -11.509 -7.224 1 90.66 ? O8 EPE 1106 A 1 HETATM 10 C C9 EPE . . . H 5 -90.484 -16.859 -4.342 1 81.25 ? C9 EPE 1106 A 1 HETATM 11 C C10 EPE . . . H 5 -90.381 -18.287 -3.827 1 90.71 ? C10 EPE 1106 A 1 HETATM 12 S S EPE . . . H 5 -91.701 -19.421 -4.33 1 84.51 ? S EPE 1106 A 1 HETATM 13 O O1S EPE . . . H 5 -92.927 -18.698 -4.681 1 71.73 ? O1S EPE 1106 A 1 HETATM 14 O O2S EPE . . . H 5 -91.182 -20.176 -5.481 1 69.95 ? O2S EPE 1106 A 1 HETATM 15 O O3S EPE . . . H 5 -91.978 -20.299 -3.191 1 54.95 ? O3S EPE 1106 A 1 HETATM 16 H H21 EPE . . . H 5 -89.868 -16.04 -6.449 1 105.84 ? H21 EPE 1106 A 1 HETATM 17 H H22 EPE . . . H 5 -88.119 -16.244 -6.376 1 105.84 ? H22 EPE 1106 A 1 HETATM 18 H H31 EPE . . . H 5 -89.719 -13.85 -5.406 1 108.82 ? H31 EPE 1106 A 1 HETATM 19 H H32 EPE . . . H 5 -88.631 -13.906 -6.791 1 108.82 ? H32 EPE 1106 A 1 HETATM 20 H H51 EPE . . . H 5 -87.157 -14.128 -2.923 1 98.09 ? H51 EPE 1106 A 1 HETATM 21 H H52 EPE . . . H 5 -86.629 -15.451 -3.96 1 98.09 ? H52 EPE 1106 A 1 HETATM 22 H H61 EPE . . . H 5 -89.509 -14.857 -3.151 1 85.68 ? H61 EPE 1106 A 1 HETATM 23 H H62 EPE . . . H 5 -88.506 -16.161 -2.516 1 85.68 ? H62 EPE 1106 A 1 HETATM 24 H H71 EPE . . . H 5 -86.097 -13.717 -6.252 1 105.45 ? H71 EPE 1106 A 1 HETATM 25 H H72 EPE . . . H 5 -85.896 -12.913 -4.697 1 105.45 ? H72 EPE 1106 A 1 HETATM 26 H H81 EPE . . . H 5 -87.092 -11.052 -5.344 1 104.83 ? H81 EPE 1106 A 1 HETATM 27 H H82 EPE . . . H 5 -88.201 -11.98 -6.352 1 104.83 ? H82 EPE 1106 A 1 HETATM 28 H HO8 EPE . . . H 5 -85.447 -11.634 -7.037 1 108.79 ? HO8 EPE 1106 A 1 HETATM 29 H H91 EPE . . . H 5 -91.013 -16.227 -3.629 1 97.5 ? H91 EPE 1106 A 1 HETATM 30 H H92 EPE . . . H 5 -91.027 -16.826 -5.287 1 97.5 ? H92 EPE 1106 A 1 HETATM 31 H H101 EPE . . . H 5 -89.431 -18.701 -4.166 1 108.86 ? H101 EPE 1106 A 1 HETATM 32 H H102 EPE . . . H 5 -90.361 -18.253 -2.738 1 108.86 ? H102 EPE 1106 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 173 _model_server_stats.query_time_ms 417 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #